Protein CHUP1, chloroplastic-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G48280 |
| fragaria_vesca | FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 |
| malus_domestica | MD13G1138500.v1.1 MD16G1134400.v1.1 |
| prunus_persica | Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 |
| pyrus_communis | pycom13g12060 pycom16g11870 |
| rosa_chinensis | RchiOBHm_Chr4g0427871 |
| rosa_laevigata | RLG00000007205 |
| rosa_roxburghii | Rroxscaffold_5G00369520 |
| rosa_rugosa | Rorug04G0220200 Rorug04G0220200 |
| rosa_samantha | Rh4AG277100 Rh4BG282800 Rh4CG298500 Rh4DG279900 |
| rosa_wichuraiana | Rw4G024070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1227 |
| Acc65I | GGTACC | 1 cut(s) | 809 |
| AccB1I | GGYRCC | 1 cut(s) | 809 |
| AccII | CGCG | 1 cut(s) | 274 |
| AccIII | TCCGGA | 2 cut(s) | 883, 1023 |
| AclWI | GGATC | 1 cut(s) | 196 |
| AcsI | RAATTY | 5 cut(s) | 112, 839, 945, 1327, 1474 |
| AcuI | CTGAAG | 4 cut(s) | 21, 437, 566, 1496 |
| AfaI | GTAC | 3 cut(s) | 133, 811, 1605 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 170, 396 |
| AgsI | TTSAA | 9 cut(s) | 574, 950, 992, 1094, 1138, 1184, 1264, 1357, 1463 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1486 |
| AhlI | ACTAGT | 1 cut(s) | 917 |
| AjnI | CCWGG | 1 cut(s) | 246 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1107, 1139 |
| Alw21I | GWGCWC | 1 cut(s) | 925 |
| Alw26I | GTCTC | 5 cut(s) | 66, 70, 262, 536, 1562 |
| Alw44I | GTGCAC | 1 cut(s) | 921 |
| AlwI | GGATC | 1 cut(s) | 196 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 521 |
| Ama87I | CYCGRG | 2 cut(s) | 265, 1626 |
| Aor13HI | TCCGGA | 2 cut(s) | 883, 1023 |
| AoxI | GGCC | 2 cut(s) | 249, 1142 |
| ApaLI | GTGCAC | 1 cut(s) | 921 |
| ApoI | RAATTY | 5 cut(s) | 112, 839, 945, 1327, 1474 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1467, 1503 |
| Asp718I | GGTACC | 1 cut(s) | 809 |
| AspLEI | GCGC | 1 cut(s) | 415 |
| AspS9I | GGNCC | 1 cut(s) | 234 |
| AsuC2I | CCSGG | 2 cut(s) | 391, 1608 |
| AsuHPI | GGTGA | 2 cut(s) | 880, 1532 |
| AsuII | TTCGAA | 1 cut(s) | 1584 |
| AvaI | CYCGRG | 2 cut(s) | 265, 1626 |
| AvaII | GGWCC | 1 cut(s) | 234 |
| BaeGI | GKGCMC | 1 cut(s) | 925 |
| BanI | GGYRCC | 1 cut(s) | 809 |
| BanII | GRGCYC | 3 cut(s) | 145, 566, 1540 |
| BbsI | GAAGAC | 1 cut(s) | 330 |
| Bbv12I | GWGCWC | 1 cut(s) | 925 |
| BbvCI | CCTCAGC | 2 cut(s) | 281, 501 |
| BccI | CCATC | 3 cut(s) | 754, 868, 906 |
| BciT130I | CCWGG | 1 cut(s) | 248 |
| BciVI | GTATCC | 1 cut(s) | 109 |
| BcnI | CCSGG | 2 cut(s) | 391, 1608 |
| BcoDI | GTCTC | 5 cut(s) | 66, 70, 262, 536, 1562 |
| BcuI | ACTAGT | 1 cut(s) | 917 |
| BfaI | CTAG | 3 cut(s) | 6, 696, 918 |
| BfmI | CTRYAG | 2 cut(s) | 458, 1038 |
| BfoI | RGCGCY | 1 cut(s) | 416 |
| BfuI | GTATCC | 1 cut(s) | 109 |
| BlpI | GCTNAGC | 1 cut(s) | 152 |
| Bme1390I | CCNGG | 3 cut(s) | 248, 391, 1608 |
| Bme18I | GGWCC | 1 cut(s) | 234 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1486 |
| BmeT110I | CYCGRG | 2 cut(s) | 265, 1626 |
| BmgT120I | GGNCC | 1 cut(s) | 234 |
| BmiI | GGNNCC | 4 cut(s) | 758, 811, 825, 1624 |
| BmrFI | CCNGG | 3 cut(s) | 248, 391, 1608 |
| BmrI | ACTGGG | 1 cut(s) | 778 |
| BmsI | GCATC | 3 cut(s) | 619, 1150, 1365 |
| BmuI | ACTGGG | 1 cut(s) | 778 |
| BpiI | GAAGAC | 1 cut(s) | 330 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 248, 280 |
| BpmI | CTGGAG | 2 cut(s) | 386, 810 |
| Bpu10I | CCTNAGC | 2 cut(s) | 281, 501 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 152 |
| Bpu14I | TTCGAA | 1 cut(s) | 1584 |
| BpuEI | CTTGAG | 1 cut(s) | 230 |
| BpuMI | CCSGG | 2 cut(s) | 391, 1608 |
| BsaI | GGTCTC | 3 cut(s) | 70, 262, 1562 |
| BsaJI | CCNNGG | 1 cut(s) | 272 |
| BsaWI | WCCGGW | 3 cut(s) | 236, 883, 1023 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 167, 197, 446, 476, 634, 664, 741, 771 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 170, 396 |
| Bse118I | RCCGGY | 2 cut(s) | 79, 907 |
| Bse1I | ACTGG | 3 cut(s) | 784, 808, 1543 |
| Bse3DI | GCAATG | 1 cut(s) | 591 |
| BseAI | TCCGGA | 2 cut(s) | 883, 1023 |
| BseBI | CCWGG | 1 cut(s) | 248 |
| BseDI | CCNNGG | 1 cut(s) | 272 |
| BseGI | GGATG | 2 cut(s) | 1237, 1380 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 170, 396 |
| BseMI | GCAATG | 1 cut(s) | 591 |
| BseNI | ACTGG | 3 cut(s) | 784, 808, 1543 |
| BseRI | GAGGAG | 3 cut(s) | 142, 227, 660 |
| BseSI | GKGCMC | 1 cut(s) | 925 |
| BsgI | GTGCAG | 1 cut(s) | 1272 |
| Bsh1236I | CGCG | 1 cut(s) | 274 |
| BshFI | GGCC | 2 cut(s) | 251, 1144 |
| BshNI | GGYRCC | 1 cut(s) | 809 |
| BsiHKAI | GWGCWC | 1 cut(s) | 925 |
| BsiHKCI | CYCGRG | 2 cut(s) | 265, 1626 |
| BsiSI | CCGG | 8 cut(s) | 80, 237, 390, 884, 908, 1024, 1551, 1607 |
| BslFI | GGGAC | 1 cut(s) | 1623 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 170, 396 |
| BsmAI | GTCTC | 5 cut(s) | 66, 70, 262, 536, 1562 |
| BsmFI | GGGAC | 1 cut(s) | 1623 |
| BsnI | GGCC | 2 cut(s) | 251, 1144 |
| Bso31I | GGTCTC | 3 cut(s) | 70, 262, 1562 |
| BsoBI | CYCGRG | 2 cut(s) | 265, 1626 |
| Bsp119I | TTCGAA | 1 cut(s) | 1584 |
| Bsp1286I | GDGCHC | 4 cut(s) | 145, 566, 925, 1540 |
| Bsp13I | TCCGGA | 2 cut(s) | 883, 1023 |
| Bsp143I | GATC | 2 cut(s) | 188, 384 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 152 |
| BspANI | GGCC | 2 cut(s) | 251, 1144 |
| BspEI | TCCGGA | 2 cut(s) | 883, 1023 |
| BspFNI | CGCG | 1 cut(s) | 274 |
| BspLI | GGNNCC | 4 cut(s) | 758, 811, 825, 1624 |
| BspMAI | CTGCAG | 2 cut(s) | 462, 1042 |
| BspPI | GGATC | 1 cut(s) | 196 |
| BspQI | GCTCTTC | 1 cut(s) | 150 |
| BspT104I | TTCGAA | 1 cut(s) | 1584 |
| BspT107I | GGYRCC | 1 cut(s) | 809 |
| BspTNI | GGTCTC | 3 cut(s) | 70, 262, 1562 |
| BsrDI | GCAATG | 1 cut(s) | 591 |
| BsrFI | RCCGGY | 2 cut(s) | 79, 907 |
| BsrI | ACTGG | 3 cut(s) | 784, 808, 1543 |
| BssAI | RCCGGY | 2 cut(s) | 79, 907 |
| BssECI | CCNNGG | 1 cut(s) | 272 |
| BssMI | GATC | 2 cut(s) | 188, 384 |
| Bst2UI | CCWGG | 1 cut(s) | 248 |
| Bst4CI | ACNGT | 3 cut(s) | 956, 1203, 1311 |
| Bst6I | CTCTTC | 3 cut(s) | 150, 1436, 1509 |
| BstBI | TTCGAA | 1 cut(s) | 1584 |
| BstC8I | GCNNGC | 5 cut(s) | 399, 1035, 1276, 1410, 1642 |
| BstDSI | CCRYGG | 1 cut(s) | 272 |
| BstF5I | GGATG | 2 cut(s) | 1237, 1380 |
| BstFNI | CGCG | 1 cut(s) | 274 |
| BstH2I | RGCGCY | 1 cut(s) | 416 |
| BstHHI | GCGC | 1 cut(s) | 415 |
| BstKTI | GATC | 2 cut(s) | 191, 387 |
| BstMAI | GTCTC | 5 cut(s) | 66, 70, 262, 536, 1562 |
| BstMBI | GATC | 2 cut(s) | 188, 384 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 80, 407, 419, 463, 503, 920, 980, 1535, 1646 |
| BstNI | CCWGG | 1 cut(s) | 248 |
| BstSCI | CCNGG | 3 cut(s) | 246, 389, 1606 |
| BstSFI | CTRYAG | 2 cut(s) | 458, 1038 |
| BstSLI | GKGCMC | 1 cut(s) | 925 |
| BstUI | CGCG | 1 cut(s) | 274 |
| BstV2I | GAAGAC | 1 cut(s) | 330 |
| BstX2I | RGATCY | 1 cut(s) | 188 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1371, 1423 |
| BstYI | RGATCY | 1 cut(s) | 188 |
| BsuI | GTATCC | 1 cut(s) | 109 |
| BsuRI | GGCC | 2 cut(s) | 251, 1144 |
| BtgI | CCRYGG | 1 cut(s) | 272 |
| BtsCI | GGATG | 2 cut(s) | 1237, 1380 |
| BtsIMutI | CAGTG | 2 cut(s) | 851, 1236 |
| Cac8I | GCNNGC | 5 cut(s) | 399, 1035, 1276, 1410, 1642 |
| CaiI | CAGNNNCTG | 1 cut(s) | 521 |
| CfoI | GCGC | 1 cut(s) | 415 |
| Cfr10I | RCCGGY | 2 cut(s) | 79, 907 |
| Cfr13I | GGNCC | 1 cut(s) | 234 |
| Cfr42I | CCGCGG | 1 cut(s) | 275 |
| CpoI | CGGWCCG | 1 cut(s) | 234 |
| Csp6I | GTAC | 3 cut(s) | 132, 810, 1604 |
| CspI | CGGWCCG | 1 cut(s) | 234 |
| CviAII | CATG | 5 cut(s) | 335, 1165, 1248, 1417, 1438 |
| CviQI | GTAC | 3 cut(s) | 132, 810, 1604 |
| DpnI | GATC | 2 cut(s) | 190, 386 |
| DpnII | GATC | 2 cut(s) | 188, 384 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1486 |
| Eam1104I | CTCTTC | 3 cut(s) | 150, 1436, 1509 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1486 |
| EarI | CTCTTC | 3 cut(s) | 150, 1436, 1509 |
| EciI | GGCGGA | 3 cut(s) | 437, 663, 694 |
| Eco24I | GRGCYC | 3 cut(s) | 145, 566, 1540 |
| Eco31I | GGTCTC | 3 cut(s) | 70, 262, 1562 |
| Eco47I | GGWCC | 1 cut(s) | 234 |
| Eco57I | CTGAAG | 4 cut(s) | 21, 437, 566, 1496 |
| Eco88I | CYCGRG | 2 cut(s) | 265, 1626 |
| EcoRI | GAATTC | 2 cut(s) | 112, 1474 |
| EcoRII | CCWGG | 1 cut(s) | 246 |
| EcoT38I | GRGCYC | 3 cut(s) | 145, 566, 1540 |
| FaeI | CATG | 5 cut(s) | 338, 1168, 1251, 1420, 1441 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1488, 1520 |
| FaqI | GGGAC | 1 cut(s) | 1623 |
| FatI | CATG | 5 cut(s) | 334, 1164, 1247, 1416, 1437 |
| FauI | CCCGC | 3 cut(s) | 390, 774, 1401 |
| FokI | GGATG | 2 cut(s) | 1244, 1387 |
| FriOI | GRGCYC | 3 cut(s) | 145, 566, 1540 |
| FspBI | CTAG | 3 cut(s) | 6, 696, 918 |
| GlaI | GCGC | 1 cut(s) | 414 |
| GsuI | CTGGAG | 2 cut(s) | 386, 810 |
| HaeII | RGCGCY | 1 cut(s) | 416 |
| HaeIII | GGCC | 2 cut(s) | 251, 1144 |
| HapII | CCGG | 8 cut(s) | 80, 237, 390, 884, 908, 1024, 1551, 1607 |
| HhaI | GCGC | 1 cut(s) | 415 |
| Hin1II | CATG | 5 cut(s) | 338, 1168, 1251, 1420, 1441 |
| Hin6I | GCGC | 1 cut(s) | 413 |
| HinP1I | GCGC | 1 cut(s) | 413 |
| HpaII | CCGG | 8 cut(s) | 80, 237, 390, 884, 908, 1024, 1551, 1607 |
| HphI | GGTGA | 2 cut(s) | 880, 1532 |
| Hpy166II | GTNNAC | 1 cut(s) | 923 |
| Hpy8I | GTNNAC | 1 cut(s) | 923 |
| HpyAV | CCTTC | 4 cut(s) | 412, 590, 814, 1147 |
| HpyCH4III | ACNGT | 3 cut(s) | 956, 1203, 1311 |
| HpyCH4IV | ACGT | 3 cut(s) | 450, 987, 1451 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 80, 407, 419, 463, 503, 920, 980, 1535, 1646 |
| HpySE526I | ACGT | 3 cut(s) | 450, 987, 1451 |
| Hsp92II | CATG | 5 cut(s) | 338, 1168, 1251, 1420, 1441 |
| HspAI | GCGC | 1 cut(s) | 413 |
| Kpn2I | TCCGGA | 2 cut(s) | 883, 1023 |
| KpnI | GGTACC | 1 cut(s) | 813 |
| KspI | CCGCGG | 1 cut(s) | 275 |
| Kzo9I | GATC | 2 cut(s) | 188, 384 |
| LguI | GCTCTTC | 1 cut(s) | 150 |
| LmnI | GCTCC | 5 cut(s) | 424, 454, 762, 829, 1456 |
| LweI | GCATC | 3 cut(s) | 619, 1150, 1365 |
| MaeI | CTAG | 3 cut(s) | 6, 696, 918 |
| MaeII | ACGT | 3 cut(s) | 450, 987, 1451 |
| MaeIII | GTNAC | 2 cut(s) | 1190, 1447 |
| MalI | GATC | 2 cut(s) | 190, 386 |
| MboI | GATC | 2 cut(s) | 188, 384 |
| MfeI | CAATTG | 1 cut(s) | 1179 |
| MflI | RGATCY | 1 cut(s) | 188 |
| MhlI | GDGCHC | 4 cut(s) | 145, 566, 925, 1540 |
| MlyI | GAGTC | 4 cut(s) | 68, 430, 1496, 1556 |
| MmeI | TCCRAC | 5 cut(s) | 89, 212, 784, 919, 1434 |
| MroI | TCCGGA | 2 cut(s) | 883, 1023 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1467, 1503 |
| MseI | TTAA | 8 cut(s) | 219, 447, 621, 657, 1197, 1313, 1317, 1322 |
| MspA1I | CMGCKG | 3 cut(s) | 274, 497, 1256 |
| MspI | CCGG | 8 cut(s) | 80, 237, 390, 884, 908, 1024, 1551, 1607 |
| MspR9I | CCNGG | 3 cut(s) | 248, 391, 1608 |
| MunI | CAATTG | 1 cut(s) | 1179 |
| MvaI | CCWGG | 1 cut(s) | 248 |
| MvnI | CGCG | 1 cut(s) | 274 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 80, 407, 419, 463, 503, 920, 980, 1535, 1646 |
| NciI | CCSGG | 2 cut(s) | 391, 1608 |
| NdeII | GATC | 2 cut(s) | 188, 384 |
| NlaIII | CATG | 5 cut(s) | 338, 1168, 1251, 1420, 1441 |
| NlaIV | GGNNCC | 4 cut(s) | 758, 811, 825, 1624 |
| NmeAIII | GCCGAG | 1 cut(s) | 280 |
| NmuCI | GTSAC | 2 cut(s) | 1190, 1447 |
| NspV | TTCGAA | 1 cut(s) | 1584 |
| PacI | TTAATTAA | 1 cut(s) | 1317 |
| PaeR7I | CTCGAG | 1 cut(s) | 265 |
| PciSI | GCTCTTC | 1 cut(s) | 150 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1467, 1503 |
| PfeI | GAWTC | 8 cut(s) | 293, 487, 878, 887, 1382, 1420, 1463, 1499 |
| PleI | GAGTC | 4 cut(s) | 67, 430, 1495, 1556 |
| PpsI | GAGTC | 4 cut(s) | 67, 430, 1495, 1556 |
| PsiI | TTATAA | 1 cut(s) | 1227 |
| Psp6I | CCWGG | 1 cut(s) | 246 |
| PspGI | CCWGG | 1 cut(s) | 246 |
| PspN4I | GGNNCC | 4 cut(s) | 758, 811, 825, 1624 |
| PspPI | GGNCC | 1 cut(s) | 234 |
| PstI | CTGCAG | 2 cut(s) | 462, 1042 |
| PstNI | CAGNNNCTG | 1 cut(s) | 521 |
| PsuI | RGATCY | 1 cut(s) | 188 |
| PvuII | CAGCTG | 1 cut(s) | 1256 |
| RsaI | GTAC | 3 cut(s) | 133, 811, 1605 |
| RsaNI | GTAC | 3 cut(s) | 132, 810, 1604 |
| Rsr2I | CGGWCCG | 1 cut(s) | 234 |
| RsrII | CGGWCCG | 1 cut(s) | 234 |
| SacII | CCGCGG | 1 cut(s) | 275 |
| SapI | GCTCTTC | 1 cut(s) | 150 |
| SaqAI | TTAA | 8 cut(s) | 219, 447, 621, 657, 1197, 1313, 1317, 1322 |
| Sau3AI | GATC | 2 cut(s) | 188, 384 |
| Sau96I | GGNCC | 1 cut(s) | 234 |
| SchI | GAGTC | 4 cut(s) | 68, 430, 1496, 1556 |
| ScrFI | CCNGG | 3 cut(s) | 248, 391, 1608 |
| SduI | GDGCHC | 4 cut(s) | 145, 566, 925, 1540 |
| SfaNI | GCATC | 3 cut(s) | 619, 1150, 1365 |
| SfcI | CTRYAG | 2 cut(s) | 458, 1038 |
| Sfr274I | CTCGAG | 1 cut(s) | 265 |
| Sfr303I | CCGCGG | 1 cut(s) | 275 |
| SfuI | TTCGAA | 1 cut(s) | 1584 |
| SgrBI | CCGCGG | 1 cut(s) | 275 |
| SinI | GGWCC | 1 cut(s) | 234 |
| SlaI | CTCGAG | 1 cut(s) | 265 |
| SmlI | CTYRAG | 2 cut(s) | 209, 265 |
| SmoI | CTYRAG | 2 cut(s) | 209, 265 |
| SpeI | ACTAGT | 1 cut(s) | 917 |
| SspI | AATATT | 1 cut(s) | 1432 |
| SspMI | CTAG | 3 cut(s) | 6, 696, 918 |
| StyD4I | CCNGG | 3 cut(s) | 246, 389, 1606 |
| TaaI | ACNGT | 3 cut(s) | 956, 1203, 1311 |
| TaiI | ACGT | 3 cut(s) | 453, 990, 1454 |
| TaqI | TCGA | 6 cut(s) | 125, 266, 892, 1380, 1560, 1584 |
| TauI | GCSGC | 5 cut(s) | 254, 277, 280, 413, 497 |
| TfiI | GAWTC | 8 cut(s) | 293, 487, 878, 887, 1382, 1420, 1463, 1499 |
| Tru1I | TTAA | 8 cut(s) | 219, 447, 621, 657, 1197, 1313, 1317, 1322 |
| Tru9I | TTAA | 8 cut(s) | 219, 447, 621, 657, 1197, 1313, 1317, 1322 |
| TscAI | CASTG | 2 cut(s) | 858, 1243 |
| TseFI | GTSAC | 2 cut(s) | 1190, 1447 |
| Tsp45I | GTSAC | 2 cut(s) | 1190, 1447 |
| TspDTI | ATGAA | 6 cut(s) | 336, 654, 997, 1128, 1433, 1454 |
| TspRI | CASTG | 2 cut(s) | 858, 1243 |
| VneI | GTGCAC | 1 cut(s) | 921 |
| VpaK11BI | GGWCC | 1 cut(s) | 234 |
| XapI | RAATTY | 5 cut(s) | 112, 839, 945, 1327, 1474 |
| XhoI | CTCGAG | 1 cut(s) | 265 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1467, 1503 |
| XspI | CTAG | 3 cut(s) | 6, 696, 918 |