MD16G1134400.v1.1

Protein CHUP1, chloroplastic-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
10305005 .. 10317364
12360 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1134400.v1.1.491

Sequence Viewer

Length: 1659 bp
ATGTCTAGCCAGACGACCAAATCTTATCTCAGAGCTTCAGCTTCTTCCAGAGCAAAGGAGTCTCCGACTGCTGCGAGACCGGCAAGAGCAAAGTCGGTATCCCCAGATGTGAATTCAGAGAGTTCGAGGAGTACGGGGAGGGCTCTTCTGCTCAGCAACAAGCCGAAATCTGGGGAGTTGGTGTTGGGATCTCAGAAAAGCAAGGAACTTGAGGAGATTAAGATTGTGGGTCGGACCGGAAATCGCCAGGCCGCCGAGCAGTTCTCGAGACCGCGGCGGCTGAGGGCGGTGGAATCCAATTCCAAGAGAAATGGTCTGAATGAAGACGACCCACATGGGAAAAACAGAGAATTAGAGGAAAAGCTGGAGATGAGTGAGAGTTTGATCGCCGGGTTGCGGGCAGAGGTGGCGGCGCTGAAGGCGGAGCTGGATAAGACTCAGGGTTTTAACGTGGAGCTGCAGTCGCAGAACGAAAGCCTCTCTCGGAATCTTGCCGCTGCTGAGGCAAAGATTTCAGCTTCTGCCACTCCTGAACAGAGGGAGACAAATGGAGAATACCAGAGCCCTAAGTTCAAAGACCTTCAGAAACTCATTGCCAACAAATTAGAACGCTCAGTAGTTAAGAAAGATGCAGTCAATGAAACAAGTCCTCCTGTTAAAGCACCACCTCCTCCGCCACCAAAATCTGCAATTCCTAGAGTTTCCGCCACCCAATGCAGACCACCACCACCACCCCCACCTCCACCATCACTTCGGCTCCAACCCCCGCCCCCACACCCACCCCAGTTCTCTGTGAGAGCAACTGGCGGTACCACTCAGAAGGCTCCAGCACTTGTAGAATTTTATCACTCACTGAGGAAGCAAGAGGTGAAGATGGATTCTCCGGAATCTCGAAACCATCATAAACCGGCAGCTACTAGTGCACATAATAGCGTTGTTGGAGAAATTCAAAACCGTTCAGCACATCTTTTAGCTATAAAAGCAGACGTTCAAACAAAAGGAGAGTTCATCAATGACCTTATCCGGAAAGTGCTGGCTGCAGCATATACCGATATAGAAGATGTCCTAAAGTTTGTGGATTGGCTTGATGTTGAACTCTCATCTTTGGCAGATGAACGGGCTGTCCTAAAGCATTTCAAGTGGCCTGAGAGGAAGGCTGATGCCATGCGAGAAGCTGCAATTGAATATCGTGACCTTAAACTGTTAGAAAGTGAGATTTCTTGTTATAAGGATGACACTGACATTCCATGTGCAGCTGCCTTGAAGAAGATTGCTGGCTTATTAGACAAGTCCGAGCGAAGCATACAACGGTTAATTAAGTTAAGAAATTCAGTTATGCGTTCTTATCAGGAATTGAAAATCCCAACTGATTGGATGCTCGATTCAGGGATTGTGAGTAAGATAAAGCGGGCTTCCATGAATCTGGCTAATATTTACATGAAGAGAGTGACGTTGGAGCTTGAATCCATTCGGAATTCAGACAGAGAGTCAAGTCAAGAATCTCTTCTGCTTCAGGGTGTGCATTTTGCATATAGGGCTCACCAGTTTGCCGGAGGTCTCGACTCTGAAACATTATGTGCTTTCGAAGAAATAAGGCAGCGAGTACCGGGACACTTAGGAGGTTCCCGAGAGCTATTGGCAGGCATAGCATCTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

553

Amino Acids

60.99

Weight (kDa)

9.38

Isoelectric Point (pI)

55.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1227
Acc65I GGTACC 1 cut(s) 809
AccB1I GGYRCC 1 cut(s) 809
AccII CGCG 1 cut(s) 274
AccIII TCCGGA 2 cut(s) 883, 1023
AclWI GGATC 1 cut(s) 196
AcsI RAATTY 5 cut(s) 112, 839, 945, 1327, 1474
AcuI CTGAAG 4 cut(s) 21, 437, 566, 1496
AfaI GTAC 3 cut(s) 133, 811, 1605
AfiI CCNNNNNNNGG 2 cut(s) 170, 396
AgsI TTSAA 9 cut(s) 574, 950, 992, 1094, 1138, 1184, 1264, 1357, 1463
AhdI GACNNNNNGTC 1 cut(s) 1486
AhlI ACTAGT 1 cut(s) 917
AjnI CCWGG 1 cut(s) 246
AloI GAACNNNNNNTCC 2 cut(s) 1107, 1139
Alw21I GWGCWC 1 cut(s) 925
Alw26I GTCTC 5 cut(s) 66, 70, 262, 536, 1562
Alw44I GTGCAC 1 cut(s) 921
AlwI GGATC 1 cut(s) 196
AlwNI CAGNNNCTG 1 cut(s) 521
Ama87I CYCGRG 2 cut(s) 265, 1626
Aor13HI TCCGGA 2 cut(s) 883, 1023
AoxI GGCC 2 cut(s) 249, 1142
ApaLI GTGCAC 1 cut(s) 921
ApoI RAATTY 5 cut(s) 112, 839, 945, 1327, 1474
Asp700I GAANNNNTTC 2 cut(s) 1467, 1503
Asp718I GGTACC 1 cut(s) 809
AspLEI GCGC 1 cut(s) 415
AspS9I GGNCC 1 cut(s) 234
AsuC2I CCSGG 2 cut(s) 391, 1608
AsuHPI GGTGA 2 cut(s) 880, 1532
AsuII TTCGAA 1 cut(s) 1584
AvaI CYCGRG 2 cut(s) 265, 1626
AvaII GGWCC 1 cut(s) 234
BaeGI GKGCMC 1 cut(s) 925
BanI GGYRCC 1 cut(s) 809
BanII GRGCYC 3 cut(s) 145, 566, 1540
BbsI GAAGAC 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 925
BbvCI CCTCAGC 2 cut(s) 281, 501
BccI CCATC 3 cut(s) 754, 868, 906
BciT130I CCWGG 1 cut(s) 248
BciVI GTATCC 1 cut(s) 109
BcnI CCSGG 2 cut(s) 391, 1608
BcoDI GTCTC 5 cut(s) 66, 70, 262, 536, 1562
BcuI ACTAGT 1 cut(s) 917
BfaI CTAG 3 cut(s) 6, 696, 918
BfmI CTRYAG 2 cut(s) 458, 1038
BfoI RGCGCY 1 cut(s) 416
BfuI GTATCC 1 cut(s) 109
BlpI GCTNAGC 1 cut(s) 152
Bme1390I CCNGG 3 cut(s) 248, 391, 1608
Bme18I GGWCC 1 cut(s) 234
BmeRI GACNNNNNGTC 1 cut(s) 1486
BmeT110I CYCGRG 2 cut(s) 265, 1626
BmgT120I GGNCC 1 cut(s) 234
BmiI GGNNCC 4 cut(s) 758, 811, 825, 1624
BmrFI CCNGG 3 cut(s) 248, 391, 1608
BmrI ACTGGG 1 cut(s) 778
BmsI GCATC 3 cut(s) 619, 1150, 1365
BmuI ACTGGG 1 cut(s) 778
BpiI GAAGAC 1 cut(s) 330
BplI GAGNNNNNCTC 2 cut(s) 248, 280
BpmI CTGGAG 2 cut(s) 386, 810
Bpu10I CCTNAGC 2 cut(s) 281, 501
Bpu1102I GCTNAGC 1 cut(s) 152
Bpu14I TTCGAA 1 cut(s) 1584
BpuEI CTTGAG 1 cut(s) 230
BpuMI CCSGG 2 cut(s) 391, 1608
BsaI GGTCTC 3 cut(s) 70, 262, 1562
BsaJI CCNNGG 1 cut(s) 272
BsaWI WCCGGW 3 cut(s) 236, 883, 1023
BsaXI ACNNNNNCTCC 8 cut(s) 167, 197, 446, 476, 634, 664, 741, 771
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 396
Bse118I RCCGGY 2 cut(s) 79, 907
Bse1I ACTGG 3 cut(s) 784, 808, 1543
Bse3DI GCAATG 1 cut(s) 591
BseAI TCCGGA 2 cut(s) 883, 1023
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 272
BseGI GGATG 2 cut(s) 1237, 1380
BseLI CCNNNNNNNGG 2 cut(s) 170, 396
BseMI GCAATG 1 cut(s) 591
BseNI ACTGG 3 cut(s) 784, 808, 1543
BseRI GAGGAG 3 cut(s) 142, 227, 660
BseSI GKGCMC 1 cut(s) 925
BsgI GTGCAG 1 cut(s) 1272
Bsh1236I CGCG 1 cut(s) 274
BshFI GGCC 2 cut(s) 251, 1144
BshNI GGYRCC 1 cut(s) 809
BsiHKAI GWGCWC 1 cut(s) 925
BsiHKCI CYCGRG 2 cut(s) 265, 1626
BsiSI CCGG 8 cut(s) 80, 237, 390, 884, 908, 1024, 1551, 1607
BslFI GGGAC 1 cut(s) 1623
BslI CCNNNNNNNGG 2 cut(s) 170, 396
BsmAI GTCTC 5 cut(s) 66, 70, 262, 536, 1562
BsmFI GGGAC 1 cut(s) 1623
BsnI GGCC 2 cut(s) 251, 1144
Bso31I GGTCTC 3 cut(s) 70, 262, 1562
BsoBI CYCGRG 2 cut(s) 265, 1626
Bsp119I TTCGAA 1 cut(s) 1584
Bsp1286I GDGCHC 4 cut(s) 145, 566, 925, 1540
Bsp13I TCCGGA 2 cut(s) 883, 1023
Bsp143I GATC 2 cut(s) 188, 384
Bsp1720I GCTNAGC 1 cut(s) 152
BspANI GGCC 2 cut(s) 251, 1144
BspEI TCCGGA 2 cut(s) 883, 1023
BspFNI CGCG 1 cut(s) 274
BspLI GGNNCC 4 cut(s) 758, 811, 825, 1624
BspMAI CTGCAG 2 cut(s) 462, 1042
BspPI GGATC 1 cut(s) 196
BspQI GCTCTTC 1 cut(s) 150
BspT104I TTCGAA 1 cut(s) 1584
BspT107I GGYRCC 1 cut(s) 809
BspTNI GGTCTC 3 cut(s) 70, 262, 1562
BsrDI GCAATG 1 cut(s) 591
BsrFI RCCGGY 2 cut(s) 79, 907
BsrI ACTGG 3 cut(s) 784, 808, 1543
BssAI RCCGGY 2 cut(s) 79, 907
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 2 cut(s) 188, 384
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 3 cut(s) 956, 1203, 1311
Bst6I CTCTTC 3 cut(s) 150, 1436, 1509
BstBI TTCGAA 1 cut(s) 1584
BstC8I GCNNGC 5 cut(s) 399, 1035, 1276, 1410, 1642
BstDSI CCRYGG 1 cut(s) 272
BstF5I GGATG 2 cut(s) 1237, 1380
BstFNI CGCG 1 cut(s) 274
BstH2I RGCGCY 1 cut(s) 416
BstHHI GCGC 1 cut(s) 415
BstKTI GATC 2 cut(s) 191, 387
BstMAI GTCTC 5 cut(s) 66, 70, 262, 536, 1562
BstMBI GATC 2 cut(s) 188, 384
BstMWI GCNNNNNNNGC 9 cut(s) 80, 407, 419, 463, 503, 920, 980, 1535, 1646
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 3 cut(s) 246, 389, 1606
BstSFI CTRYAG 2 cut(s) 458, 1038
BstSLI GKGCMC 1 cut(s) 925
BstUI CGCG 1 cut(s) 274
BstV2I GAAGAC 1 cut(s) 330
BstX2I RGATCY 1 cut(s) 188
BstXI CCANNNNNNTGG 2 cut(s) 1371, 1423
BstYI RGATCY 1 cut(s) 188
BsuI GTATCC 1 cut(s) 109
BsuRI GGCC 2 cut(s) 251, 1144
BtgI CCRYGG 1 cut(s) 272
BtsCI GGATG 2 cut(s) 1237, 1380
BtsIMutI CAGTG 2 cut(s) 851, 1236
Cac8I GCNNGC 5 cut(s) 399, 1035, 1276, 1410, 1642
CaiI CAGNNNCTG 1 cut(s) 521
CfoI GCGC 1 cut(s) 415
Cfr10I RCCGGY 2 cut(s) 79, 907
Cfr13I GGNCC 1 cut(s) 234
Cfr42I CCGCGG 1 cut(s) 275
CpoI CGGWCCG 1 cut(s) 234
Csp6I GTAC 3 cut(s) 132, 810, 1604
CspI CGGWCCG 1 cut(s) 234
CviAII CATG 5 cut(s) 335, 1165, 1248, 1417, 1438
CviQI GTAC 3 cut(s) 132, 810, 1604
DpnI GATC 2 cut(s) 190, 386
DpnII GATC 2 cut(s) 188, 384
DriI GACNNNNNGTC 1 cut(s) 1486
Eam1104I CTCTTC 3 cut(s) 150, 1436, 1509
Eam1105I GACNNNNNGTC 1 cut(s) 1486
EarI CTCTTC 3 cut(s) 150, 1436, 1509
EciI GGCGGA 3 cut(s) 437, 663, 694
Eco24I GRGCYC 3 cut(s) 145, 566, 1540
Eco31I GGTCTC 3 cut(s) 70, 262, 1562
Eco47I GGWCC 1 cut(s) 234
Eco57I CTGAAG 4 cut(s) 21, 437, 566, 1496
Eco88I CYCGRG 2 cut(s) 265, 1626
EcoRI GAATTC 2 cut(s) 112, 1474
EcoRII CCWGG 1 cut(s) 246
EcoT38I GRGCYC 3 cut(s) 145, 566, 1540
FaeI CATG 5 cut(s) 338, 1168, 1251, 1420, 1441
FalI AAGNNNNNCTT 2 cut(s) 1488, 1520
FaqI GGGAC 1 cut(s) 1623
FatI CATG 5 cut(s) 334, 1164, 1247, 1416, 1437
FauI CCCGC 3 cut(s) 390, 774, 1401
FokI GGATG 2 cut(s) 1244, 1387
FriOI GRGCYC 3 cut(s) 145, 566, 1540
FspBI CTAG 3 cut(s) 6, 696, 918
GlaI GCGC 1 cut(s) 414
GsuI CTGGAG 2 cut(s) 386, 810
HaeII RGCGCY 1 cut(s) 416
HaeIII GGCC 2 cut(s) 251, 1144
HapII CCGG 8 cut(s) 80, 237, 390, 884, 908, 1024, 1551, 1607
HhaI GCGC 1 cut(s) 415
Hin1II CATG 5 cut(s) 338, 1168, 1251, 1420, 1441
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HpaII CCGG 8 cut(s) 80, 237, 390, 884, 908, 1024, 1551, 1607
HphI GGTGA 2 cut(s) 880, 1532
Hpy166II GTNNAC 1 cut(s) 923
Hpy8I GTNNAC 1 cut(s) 923
HpyAV CCTTC 4 cut(s) 412, 590, 814, 1147
HpyCH4III ACNGT 3 cut(s) 956, 1203, 1311
HpyCH4IV ACGT 3 cut(s) 450, 987, 1451
HpyF10VI GCNNNNNNNGC 9 cut(s) 80, 407, 419, 463, 503, 920, 980, 1535, 1646
HpySE526I ACGT 3 cut(s) 450, 987, 1451
Hsp92II CATG 5 cut(s) 338, 1168, 1251, 1420, 1441
HspAI GCGC 1 cut(s) 413
Kpn2I TCCGGA 2 cut(s) 883, 1023
KpnI GGTACC 1 cut(s) 813
KspI CCGCGG 1 cut(s) 275
Kzo9I GATC 2 cut(s) 188, 384
LguI GCTCTTC 1 cut(s) 150
LmnI GCTCC 5 cut(s) 424, 454, 762, 829, 1456
LweI GCATC 3 cut(s) 619, 1150, 1365
MaeI CTAG 3 cut(s) 6, 696, 918
MaeII ACGT 3 cut(s) 450, 987, 1451
MaeIII GTNAC 2 cut(s) 1190, 1447
MalI GATC 2 cut(s) 190, 386
MboI GATC 2 cut(s) 188, 384
MfeI CAATTG 1 cut(s) 1179
MflI RGATCY 1 cut(s) 188
MhlI GDGCHC 4 cut(s) 145, 566, 925, 1540
MlyI GAGTC 4 cut(s) 68, 430, 1496, 1556
MmeI TCCRAC 5 cut(s) 89, 212, 784, 919, 1434
MroI TCCGGA 2 cut(s) 883, 1023
MroXI GAANNNNTTC 2 cut(s) 1467, 1503
MseI TTAA 8 cut(s) 219, 447, 621, 657, 1197, 1313, 1317, 1322
MspA1I CMGCKG 3 cut(s) 274, 497, 1256
MspI CCGG 8 cut(s) 80, 237, 390, 884, 908, 1024, 1551, 1607
MspR9I CCNGG 3 cut(s) 248, 391, 1608
MunI CAATTG 1 cut(s) 1179
MvaI CCWGG 1 cut(s) 248
MvnI CGCG 1 cut(s) 274
MwoI GCNNNNNNNGC 9 cut(s) 80, 407, 419, 463, 503, 920, 980, 1535, 1646
NciI CCSGG 2 cut(s) 391, 1608
NdeII GATC 2 cut(s) 188, 384
NlaIII CATG 5 cut(s) 338, 1168, 1251, 1420, 1441
NlaIV GGNNCC 4 cut(s) 758, 811, 825, 1624
NmeAIII GCCGAG 1 cut(s) 280
NmuCI GTSAC 2 cut(s) 1190, 1447
NspV TTCGAA 1 cut(s) 1584
PacI TTAATTAA 1 cut(s) 1317
PaeR7I CTCGAG 1 cut(s) 265
PciSI GCTCTTC 1 cut(s) 150
PdmI GAANNNNTTC 2 cut(s) 1467, 1503
PfeI GAWTC 8 cut(s) 293, 487, 878, 887, 1382, 1420, 1463, 1499
PleI GAGTC 4 cut(s) 67, 430, 1495, 1556
PpsI GAGTC 4 cut(s) 67, 430, 1495, 1556
PsiI TTATAA 1 cut(s) 1227
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 4 cut(s) 758, 811, 825, 1624
PspPI GGNCC 1 cut(s) 234
PstI CTGCAG 2 cut(s) 462, 1042
PstNI CAGNNNCTG 1 cut(s) 521
PsuI RGATCY 1 cut(s) 188
PvuII CAGCTG 1 cut(s) 1256
RsaI GTAC 3 cut(s) 133, 811, 1605
RsaNI GTAC 3 cut(s) 132, 810, 1604
Rsr2I CGGWCCG 1 cut(s) 234
RsrII CGGWCCG 1 cut(s) 234
SacII CCGCGG 1 cut(s) 275
SapI GCTCTTC 1 cut(s) 150
SaqAI TTAA 8 cut(s) 219, 447, 621, 657, 1197, 1313, 1317, 1322
Sau3AI GATC 2 cut(s) 188, 384
Sau96I GGNCC 1 cut(s) 234
SchI GAGTC 4 cut(s) 68, 430, 1496, 1556
ScrFI CCNGG 3 cut(s) 248, 391, 1608
SduI GDGCHC 4 cut(s) 145, 566, 925, 1540
SfaNI GCATC 3 cut(s) 619, 1150, 1365
SfcI CTRYAG 2 cut(s) 458, 1038
Sfr274I CTCGAG 1 cut(s) 265
Sfr303I CCGCGG 1 cut(s) 275
SfuI TTCGAA 1 cut(s) 1584
SgrBI CCGCGG 1 cut(s) 275
SinI GGWCC 1 cut(s) 234
SlaI CTCGAG 1 cut(s) 265
SmlI CTYRAG 2 cut(s) 209, 265
SmoI CTYRAG 2 cut(s) 209, 265
SpeI ACTAGT 1 cut(s) 917
SspI AATATT 1 cut(s) 1432
SspMI CTAG 3 cut(s) 6, 696, 918
StyD4I CCNGG 3 cut(s) 246, 389, 1606
TaaI ACNGT 3 cut(s) 956, 1203, 1311
TaiI ACGT 3 cut(s) 453, 990, 1454
TaqI TCGA 6 cut(s) 125, 266, 892, 1380, 1560, 1584
TauI GCSGC 5 cut(s) 254, 277, 280, 413, 497
TfiI GAWTC 8 cut(s) 293, 487, 878, 887, 1382, 1420, 1463, 1499
Tru1I TTAA 8 cut(s) 219, 447, 621, 657, 1197, 1313, 1317, 1322
Tru9I TTAA 8 cut(s) 219, 447, 621, 657, 1197, 1313, 1317, 1322
TscAI CASTG 2 cut(s) 858, 1243
TseFI GTSAC 2 cut(s) 1190, 1447
Tsp45I GTSAC 2 cut(s) 1190, 1447
TspDTI ATGAA 6 cut(s) 336, 654, 997, 1128, 1433, 1454
TspRI CASTG 2 cut(s) 858, 1243
VneI GTGCAC 1 cut(s) 921
VpaK11BI GGWCC 1 cut(s) 234
XapI RAATTY 5 cut(s) 112, 839, 945, 1327, 1474
XhoI CTCGAG 1 cut(s) 265
XmnI GAANNNNTTC 2 cut(s) 1467, 1503
XspI CTAG 3 cut(s) 6, 696, 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.