AT1G48440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011123
Physical Location & Seq
Forward (+)
17906871 .. 17908534
1664 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G48440.1

Sequence Viewer

Length: 390 bp
ATGGCGTTGCAATGGCTGATTCTATCGTATGTGGTGGCCGTCGAAGTAGTAATCACCCTCGTGTTGACTCTCCCTTACCCTATGCTTCTTAAGAAACGTGTAGTTCAGCTTGTCTCATTGATTCTCCAACCTGCTGCTTCCATCGTCGCCTTCGCCGGATTTCAGCTCCTCGATATTTACTGGAAGGCTGAGCATAGACTATCTTGTTCATCTGAGGTTTGCACTGCTACAGAACGTGATCGCTACGAGAAATCTATCTACAAGGCTCAGAGGAACGTGGTTCTATGCGCTGCAGGAATTCTACTCTACTGGTGCATCTACCGCATCTGCAAATACAACAAAGACCTGGAGCGCTTGGAGGCAACGGAGAAGAGATTCAAGGAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bap31

Protein Analysis

129

Amino Acids

14.98

Weight (kDa)

8.81

Isoelectric Point (pI)

39.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bap31 PF05529 1 - 123 5.9e-07 Bap31/Bap29 transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 139
AciI CCGC 1 cut(s) 322
AcoI YGGCCR 1 cut(s) 36
AcsI RAATTY 1 cut(s) 297
AfeI AGCGCT 1 cut(s) 353
AflII CTTAAG 1 cut(s) 89
AflIII ACRYGT 1 cut(s) 97
AgsI TTSAA 1 cut(s) 379
AjnI CCWGG 1 cut(s) 345
AleI CACNNNNGTG 1 cut(s) 59
AluBI AGCT 2 cut(s) 109, 166
AluI AGCT 2 cut(s) 109, 166
Alw26I GTCTC 1 cut(s) 118
Aor51HI AGCGCT 1 cut(s) 353
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 2 cut(s) 134, 290
ApoI RAATTY 1 cut(s) 297
Asp700I GAANNNNTTC 1 cut(s) 374
AspLEI GCGC 2 cut(s) 290, 354
AsuHPI GGTGA 1 cut(s) 46
BauI CACGAG 1 cut(s) 59
BbvI GCAGC 2 cut(s) 121, 277
BccI CCATC 1 cut(s) 149
BceAI ACGGC 1 cut(s) 23
BciT130I CCWGG 1 cut(s) 347
BcoDI GTCTC 1 cut(s) 118
BfmI CTRYAG 2 cut(s) 228, 291
BfoI RGCGCY 1 cut(s) 355
BfrI CTTAAG 1 cut(s) 89
BfuAI ACCTGC 1 cut(s) 139
BisI GCNGC 2 cut(s) 135, 291
BlpI GCTNAGC 1 cut(s) 189
BlsI GCNGC 2 cut(s) 136, 292
Bme1390I CCNGG 1 cut(s) 347
BmrFI CCNGG 1 cut(s) 347
BmsI GCATC 2 cut(s) 324, 333
BpmI CTGGAG 1 cut(s) 368
Bpu1102I GCTNAGC 1 cut(s) 189
Bse1I ACTGG 2 cut(s) 185, 314
Bse3DI GCAATG 1 cut(s) 17
BseBI CCWGG 1 cut(s) 347
BseMI GCAATG 1 cut(s) 17
BseMII CTCAG 3 cut(s) 180, 204, 281
BseNI ACTGG 2 cut(s) 185, 314
BseRI GAGGAG 1 cut(s) 158
BseXI GCAGC 2 cut(s) 121, 277
BshFI GGCC 1 cut(s) 38
BsiSI CCGG 1 cut(s) 156
BsmAI GTCTC 1 cut(s) 118
BsnI GGCC 1 cut(s) 38
Bsp143I GATC 1 cut(s) 238
Bsp1720I GCTNAGC 1 cut(s) 189
BspACI CCGC 1 cut(s) 322
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 3 cut(s) 181, 205, 280
BspMAI CTGCAG 1 cut(s) 295
BspMI ACCTGC 1 cut(s) 139
BspTI CTTAAG 1 cut(s) 89
BsrDI GCAATG 1 cut(s) 17
BsrI ACTGG 2 cut(s) 185, 314
BssMI GATC 1 cut(s) 238
BssSI CACGAG 1 cut(s) 59
Bst2BI CACGAG 1 cut(s) 59
Bst2UI CCWGG 1 cut(s) 347
Bst6I CTCTTC 2 cut(s) 365, 378
BstAFI CTTAAG 1 cut(s) 89
BstDEI CTNAG 3 cut(s) 189, 213, 267
BstH2I RGCGCY 1 cut(s) 355
BstHHI GCGC 2 cut(s) 290, 354
BstKTI GATC 1 cut(s) 241
BstMAI GTCTC 1 cut(s) 118
BstMBI GATC 1 cut(s) 238
BstMWI GCNNNNNNNGC 1 cut(s) 321
BstNI CCWGG 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 345
BstSFI CTRYAG 2 cut(s) 228, 291
BstV1I GCAGC 2 cut(s) 121, 277
BsuRI GGCC 1 cut(s) 38
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 1 cut(s) 222
BveI ACCTGC 1 cut(s) 139
CfoI GCGC 2 cut(s) 290, 354
CviJI RGCY 6 cut(s) 16, 38, 109, 166, 188, 266
CviKI_1 RGCY 6 cut(s) 16, 38, 109, 166, 188, 266
DdeI CTNAG 3 cut(s) 189, 213, 267
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 36
Eam1104I CTCTTC 2 cut(s) 365, 378
EarI CTCTTC 2 cut(s) 365, 378
Eco47III AGCGCT 1 cut(s) 353
EcoRI GAATTC 1 cut(s) 297
EcoRII CCWGG 1 cut(s) 345
FaiI YATR 4 cut(s) 30, 83, 195, 286
Fnu4HI GCNGC 2 cut(s) 135, 291
Fsp4HI GCNGC 2 cut(s) 135, 291
GlaI GCGC 2 cut(s) 289, 353
GluI GCNGC 2 cut(s) 135, 291
GsuI CTGGAG 1 cut(s) 368
HaeII RGCGCY 1 cut(s) 355
HaeIII GGCC 1 cut(s) 38
HapII CCGG 1 cut(s) 156
HhaI GCGC 2 cut(s) 290, 354
Hin6I GCGC 2 cut(s) 288, 352
HinP1I GCGC 2 cut(s) 288, 352
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HinfI GANTC 4 cut(s) 19, 67, 121, 375
HpaII CCGG 1 cut(s) 156
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 66
Hpy188I TCNGA 2 cut(s) 214, 270
Hpy8I GTNNAC 1 cut(s) 66
Hpy99I CGWCG 2 cut(s) 44, 149
HpyAV CCTTC 2 cut(s) 160, 178
HpyCH4IV ACGT 3 cut(s) 97, 235, 276
HpyCH4V TGCA 5 cut(s) 10, 222, 293, 315, 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 321
HpyF3I CTNAG 3 cut(s) 189, 213, 267
HpySE526I ACGT 3 cut(s) 97, 235, 276
HspAI GCGC 2 cut(s) 288, 352
Kzo9I GATC 1 cut(s) 238
LmnI GCTCC 2 cut(s) 171, 349
LpnPI CCDG 7 cut(s) 144, 166, 169, 279, 295, 332, 359
Lsp1109I GCAGC 2 cut(s) 121, 277
LweI GCATC 2 cut(s) 324, 333
MaeII ACGT 3 cut(s) 97, 235, 276
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 1 cut(s) 382
MluCI AATT 1 cut(s) 297
MlyI GAGTC 1 cut(s) 61
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 5 cut(s) 68, 179, 208, 264, 352
MroXI GAANNNNTTC 1 cut(s) 374
MseI TTAA 1 cut(s) 90
MslI CAYNNNNRTG 1 cut(s) 59
MspCI CTTAAG 1 cut(s) 89
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 347
MvaI CCWGG 1 cut(s) 347
MwoI GCNNNNNNNGC 1 cut(s) 321
NdeII GATC 1 cut(s) 238
OliI CACNNNNGTG 1 cut(s) 59
PdmI GAANNNNTTC 1 cut(s) 374
PfeI GAWTC 3 cut(s) 19, 121, 375
PkrI GCNGC 2 cut(s) 136, 292
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
Psp6I CCWGG 1 cut(s) 345
PspGI CCWGG 1 cut(s) 345
PstI CTGCAG 1 cut(s) 295
RseI CAYNNNNRTG 1 cut(s) 59
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 2 cut(s) 135, 291
Sau3AI GATC 1 cut(s) 238
SchI GAGTC 1 cut(s) 61
ScrFI CCNGG 1 cut(s) 347
SetI ASST 8 cut(s) 100, 111, 133, 168, 219, 238, 279, 348
SfaNI GCATC 2 cut(s) 324, 333
SfcI CTRYAG 2 cut(s) 228, 291
SmiMI CAYNNNNRTG 1 cut(s) 59
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 1 cut(s) 297
SsiI CCGC 1 cut(s) 322
StyD4I CCNGG 1 cut(s) 345
TaiI ACGT 3 cut(s) 100, 238, 279
TaqI TCGA 2 cut(s) 42, 171
TasI AATT 1 cut(s) 297
TfiI GAWTC 3 cut(s) 19, 121, 375
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 1 cut(s) 229
TseI GCWGC 2 cut(s) 134, 290
TspDTI ATGAA 1 cut(s) 198
TspGWI ACGGA 1 cut(s) 380
TspRI CASTG 1 cut(s) 229
Vha464I CTTAAG 1 cut(s) 89
XapI RAATTY 1 cut(s) 297
XmnI GAANNNNTTC 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.