FvH4_5g23150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011123
Physical Location & Seq
Forward (+)
14485156 .. 14486018
863 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g23150.t1

Sequence Viewer

Length: 276 bp
ATGGCGTTGCAGTGGATGATACTGACGTACGTGGTGGCGGCAGAGGCGGCCATAGCGCTTCTCCTAACTCTCCCGGCGCCGAAGCTGTTGACTCGCTTCGTGTCTTTGATCTCTCTCATTCTCCAGCCGGCGCTCTTCGTCGTCCCCTTCGTCGGATTCCAGCTCCTCGATATTTACTGGAAGATGGAGCATCGCTTGACGTGCACCTCAGACATCTGCACTGCTGCTGAGCGAGACCGTTCTGAGAAATCACTCTACAAAGCTCAAAGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bap31

Protein Analysis

92

Amino Acids

10.34

Weight (kDa)

8.71

Isoelectric Point (pI)

54.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 76
AciI CCGC 2 cut(s) 38, 47
AcoI YGGCCR 1 cut(s) 48
AcyI GRCGYC 1 cut(s) 77
AfaI GTAC 1 cut(s) 29
AfeI AGCGCT 1 cut(s) 57
AfiI CCNNNNNNNGG 1 cut(s) 152
AjiI CACGTC 1 cut(s) 201
AluBI AGCT 3 cut(s) 85, 163, 263
AluI AGCT 3 cut(s) 85, 163, 263
Alw21I GWGCWC 1 cut(s) 206
Alw26I GTCTC 1 cut(s) 228
Alw44I GTGCAC 1 cut(s) 202
Aor51HI AGCGCT 1 cut(s) 57
AoxI GGCC 1 cut(s) 48
ApaLI GTGCAC 1 cut(s) 202
ApeKI GCWGC 1 cut(s) 224
AspLEI GCGC 3 cut(s) 58, 79, 133
AsuC2I CCSGG 1 cut(s) 74
BaeGI GKGCMC 1 cut(s) 206
BaeI ACNNNNGTAYC 2 cut(s) 11, 44
BanI GGYRCC 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 206
BbvI GCAGC 1 cut(s) 211
BccI CCATC 1 cut(s) 178
BcnI CCSGG 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 228
BfoI RGCGCY 3 cut(s) 59, 80, 134
BisI GCNGC 3 cut(s) 39, 48, 225
BlpI GCTNAGC 1 cut(s) 228
BlsI GCNGC 3 cut(s) 40, 49, 226
Bme1390I CCNGG 1 cut(s) 74
BmgBI CACGTC 1 cut(s) 201
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 74
BmsI GCATC 1 cut(s) 199
BpmI CTGGAG 1 cut(s) 107
Bpu1102I GCTNAGC 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 74
BsaAI YACGTR 1 cut(s) 31
BsaHI GRCGYC 1 cut(s) 77
BsaI GGTCTC 1 cut(s) 228
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse118I RCCGGY 1 cut(s) 127
Bse1I ACTGG 1 cut(s) 182
BseGI GGATG 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMII CTCAG 3 cut(s) 219, 222, 234
BseNI ACTGG 1 cut(s) 182
BseRI GAGGAG 1 cut(s) 155
BseSI GKGCMC 1 cut(s) 206
BseXI GCAGC 1 cut(s) 211
BsgI GTGCAG 1 cut(s) 202
BshFI GGCC 1 cut(s) 50
BshNI GGYRCC 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 206
BsiSI CCGG 2 cut(s) 74, 128
BsiWI CGTACG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 228
BsmFI GGGAC 1 cut(s) 128
BsnI GGCC 1 cut(s) 50
Bso31I GGTCTC 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 206
Bsp143I GATC 1 cut(s) 108
Bsp1720I GCTNAGC 1 cut(s) 228
BspACI CCGC 2 cut(s) 38, 47
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 3 cut(s) 220, 221, 235
BspLI GGNNCC 1 cut(s) 78
BspQI GCTCTTC 1 cut(s) 140
BspT107I GGYRCC 1 cut(s) 76
BspTNI GGTCTC 1 cut(s) 228
BsrFI RCCGGY 1 cut(s) 127
BsrI ACTGG 1 cut(s) 182
BssAI RCCGGY 1 cut(s) 127
BssMI GATC 1 cut(s) 108
BssNI GRCGYC 1 cut(s) 77
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 1 cut(s) 140
BstACI GRCGYC 1 cut(s) 77
BstBAI YACGTR 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 3 cut(s) 208, 228, 243
BstF5I GGATG 1 cut(s) 21
BstH2I RGCGCY 3 cut(s) 59, 80, 134
BstHHI GCGC 3 cut(s) 58, 79, 133
BstKTI GATC 1 cut(s) 111
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 1 cut(s) 108
BstMWI GCNNNNNNNGC 4 cut(s) 44, 47, 53, 201
BstSCI CCNGG 1 cut(s) 72
BstSLI GKGCMC 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 211
BsuRI GGCC 1 cut(s) 50
BtgZI GCGATG 1 cut(s) 176
BtrI CACGTC 1 cut(s) 201
BtsCI GGATG 1 cut(s) 21
BtsI GCAGTG 2 cut(s) 17, 219
BtsIMutI CAGTG 2 cut(s) 17, 219
Cac8I GCNNGC 1 cut(s) 129
CfoI GCGC 3 cut(s) 58, 79, 133
Cfr10I RCCGGY 1 cut(s) 127
Csp6I GTAC 1 cut(s) 28
CviJI RGCY 5 cut(s) 50, 85, 127, 163, 263
CviKI_1 RGCY 5 cut(s) 50, 85, 127, 163, 263
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 3 cut(s) 208, 228, 243
DinI GGCGCC 1 cut(s) 78
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
EaeI YGGCCR 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 140
Eco31I GGTCTC 1 cut(s) 228
Eco47III AGCGCT 1 cut(s) 57
EgeI GGCGCC 1 cut(s) 78
EheI GGCGCC 1 cut(s) 78
FaiI YATR 1 cut(s) 53
FaqI GGGAC 1 cut(s) 128
Fnu4HI GCNGC 3 cut(s) 39, 48, 225
FokI GGATG 1 cut(s) 28
Fsp4HI GCNGC 3 cut(s) 39, 48, 225
GlaI GCGC 3 cut(s) 57, 78, 132
GluI GCNGC 3 cut(s) 39, 48, 225
GsuI CTGGAG 1 cut(s) 107
HaeII RGCGCY 3 cut(s) 59, 80, 134
HaeIII GGCC 1 cut(s) 50
HapII CCGG 2 cut(s) 74, 128
HhaI GCGC 3 cut(s) 58, 79, 133
Hin1I GRCGYC 1 cut(s) 77
Hin6I GCGC 3 cut(s) 56, 77, 131
HinP1I GCGC 3 cut(s) 56, 77, 131
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 2 cut(s) 91, 156
HpaII CCGG 2 cut(s) 74, 128
Hpy166II GTNNAC 2 cut(s) 90, 204
Hpy188I TCNGA 3 cut(s) 155, 211, 244
Hpy8I GTNNAC 2 cut(s) 90, 204
Hpy99I CGWCG 2 cut(s) 143, 155
HpyAV CCTTC 1 cut(s) 157
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4IV ACGT 3 cut(s) 26, 30, 200
HpyCH4V TGCA 3 cut(s) 10, 204, 219
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 47, 53, 201
HpyF3I CTNAG 3 cut(s) 208, 228, 243
HpySE526I ACGT 3 cut(s) 26, 30, 200
Hsp92I GRCGYC 1 cut(s) 77
HspAI GCGC 3 cut(s) 56, 77, 131
KasI GGCGCC 1 cut(s) 76
KroI GCCGGC 1 cut(s) 127
KroNI GCCGGC 1 cut(s) 129
Kzo9I GATC 1 cut(s) 108
LguI GCTCTTC 1 cut(s) 140
LmnI GCTCC 2 cut(s) 168, 187
LpnPI CCDG 5 cut(s) 87, 137, 141, 163, 173
Lsp1109I GCAGC 1 cut(s) 211
LweI GCATC 1 cut(s) 199
MaeII ACGT 3 cut(s) 26, 30, 200
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MboII GAAGA 2 cut(s) 127, 193
MhlI GDGCHC 1 cut(s) 206
MluCI AATT 1 cut(s) 271
Mly113I GGCGCC 1 cut(s) 77
MlyI GAGTC 1 cut(s) 85
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 3 cut(s) 37, 176, 217
MroNI GCCGGC 1 cut(s) 127
MseI TTAA 1 cut(s) 274
MspI CCGG 2 cut(s) 74, 128
MspR9I CCNGG 1 cut(s) 74
MwoI GCNNNNNNNGC 4 cut(s) 44, 47, 53, 201
NaeI GCCGGC 1 cut(s) 129
NarI GGCGCC 1 cut(s) 77
NciI CCSGG 1 cut(s) 74
NdeII GATC 1 cut(s) 108
NgoMIV GCCGGC 1 cut(s) 127
NlaIV GGNNCC 1 cut(s) 78
PciSI GCTCTTC 1 cut(s) 140
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PdiI GCCGGC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 156
Pfl23II CGTACG 1 cut(s) 27
PkrI GCNGC 3 cut(s) 40, 49, 226
PleI GAGTC 1 cut(s) 85
PluTI GGCGCC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 85
Ppu21I YACGTR 1 cut(s) 31
PspLI CGTACG 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 78
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
SapI GCTCTTC 1 cut(s) 140
SaqAI TTAA 1 cut(s) 274
SatI GCNGC 3 cut(s) 39, 48, 225
Sau3AI GATC 1 cut(s) 108
SchI GAGTC 1 cut(s) 85
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 1 cut(s) 206
SetI ASST 7 cut(s) 29, 33, 87, 165, 203, 209, 265
SfaNI GCATC 1 cut(s) 199
SfoI GGCGCC 1 cut(s) 78
Sse9I AATT 1 cut(s) 271
SsiI CCGC 2 cut(s) 38, 47
SspDI GGCGCC 1 cut(s) 76
StyD4I CCNGG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 239
TaiI ACGT 3 cut(s) 29, 33, 203
TaqI TCGA 1 cut(s) 168
TasI AATT 1 cut(s) 271
TauI GCSGC 2 cut(s) 41, 50
TfiI GAWTC 1 cut(s) 156
Tru1I TTAA 1 cut(s) 274
Tru9I TTAA 1 cut(s) 274
TscAI CASTG 2 cut(s) 17, 226
TseI GCWGC 1 cut(s) 224
TspRI CASTG 2 cut(s) 17, 226
VneI GTGCAC 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.