Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0011123

Physical Location & Seq

Genomic Coordinates Reverse (-)

10558931 .. 10559215

Gene Structure 285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1074600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGTGTTGCAGTGGATGATATTGACGTACGTGGTGGCGGCAGGGGCGGCGTTAGCCTTCCTCCTAACCATTCTGGCGCCCAAGTTGTTGAAAAATCGATTCGTGTCGCTGGTCTCTCTAATCCTCCAACCCGCACTCTTCATCGTCCCCTTCGCTGGATTTCAGCTCCTGGATATATACTGGAAAAATGAGCATCGGTTGGCCTGCACCTCTGATATCTGCACCGCCCCTGAGCATGACCGCTATGAGAAATCGATCACAAAAAAGCTGATCAACCTAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bap31

Protein Analysis

95

Amino Acids

10.65

Weight (kDa)

9.06

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48440 AT3G17780
fragaria_vesca	FvH4_5g17720 FvH4_5g23150
malus_domestica	MD06G1232700.v1.1 MD10G1074600.v1.1 MD14G1239700.v1.1
prunus_persica	Prupe.5G237300_v2.0.a1
pyrus_communis	pycom06g20770 pycom14g20130
rosa_chinensis	RchiOBHm_Chr7g0177941
rosa_multiflora	Rmu_sc0002154.1_g000002 Rmu_sc0017005.1_g000002 Rmu_sc0041284.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275390
rosa_rugosa	Rorug06G0411200
rosa_samantha	Rh7AG010300 Rh7CG010800 Rh7DG010600
rosa_wichuraiana	Rw7G000880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	76
AciI	CCGC	5 cut(s)	38, 47, 132, 225, 241
AcyI	GRCGYC	1 cut(s)	77
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	2 cut(s)	166, 268
AluI	AGCT	2 cut(s)	166, 268
Alw26I	GTCTC	1 cut(s)	118
AlwNI	CAGNNNCTG	1 cut(s)	169
AoxI	GGCC	1 cut(s)	201
AspLEI	GCGC	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	76
BciT130I	CCWGG	1 cut(s)	170
BclI	TGATCA	1 cut(s)	270
BcoDI	GTCTC	1 cut(s)	118
BfaI	CTAG	2 cut(s)	278, 283
BfoI	RGCGCY	1 cut(s)	80
BisI	GCNGC	2 cut(s)	39, 48
BlsI	GCNGC	2 cut(s)	40, 49
Bme1390I	CCNGG	1 cut(s)	170
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	170
BmsI	GCATC	1 cut(s)	202
Bpu10I	CCTNAGC	1 cut(s)	231
Bsa29I	ATCGAT	2 cut(s)	97, 254
BsaAI	YACGTR	1 cut(s)	31
BsaHI	GRCGYC	1 cut(s)	77
BsaI	GGTCTC	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	185
BseBI	CCWGG	1 cut(s)	170
BseCI	ATCGAT	2 cut(s)	97, 254
BseGI	GGATG	1 cut(s)	21
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	185
BsgI	GTGCAG	2 cut(s)	190, 205
BshFI	GGCC	1 cut(s)	203
BshNI	GGYRCC	1 cut(s)	76
BshVI	ATCGAT	2 cut(s)	97, 254
BsiWI	CGTACG	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	203
Bso31I	GGTCTC	1 cut(s)	118
Bsp143I	GATC	2 cut(s)	255, 270
BspACI	CCGC	5 cut(s)	38, 47, 132, 225, 241
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	223
BspDI	ATCGAT	2 cut(s)	97, 254
BspLI	GGNNCC	1 cut(s)	78
BspT107I	GGYRCC	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	185
BssMI	GATC	2 cut(s)	255, 270
BssNI	GRCGYC	1 cut(s)	77
Bst2UI	CCWGG	1 cut(s)	170
Bst6I	CTCTTC	1 cut(s)	143
BstACI	GRCGYC	1 cut(s)	77
BstBAI	YACGTR	1 cut(s)	31
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	21
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	2 cut(s)	258, 273
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	2 cut(s)	255, 270
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 47, 53
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	168
Bsu15I	ATCGAT	2 cut(s)	97, 254
BsuRI	GGCC	1 cut(s)	203
BsuTUI	ATCGAT	2 cut(s)	97, 254
BtsCI	GGATG	1 cut(s)	21
BtsI	GCAGTG	1 cut(s)	17
BtsIMutI	CAGTG	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	205
CaiI	CAGNNNCTG	1 cut(s)	169
CfoI	GCGC	1 cut(s)	79
ClaI	ATCGAT	2 cut(s)	97, 254
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	1 cut(s)	236
CviJI	RGCY	4 cut(s)	56, 166, 203, 268
CviKI_1	RGCY	4 cut(s)	56, 166, 203, 268
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	1 cut(s)	231
DinI	GGCGCC	1 cut(s)	78
DpnI	GATC	2 cut(s)	257, 272
DpnII	GATC	2 cut(s)	255, 270
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Eco31I	GGTCTC	1 cut(s)	118
Eco32I	GATATC	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	168
EcoRV	GATATC	1 cut(s)	217
EgeI	GGCGCC	1 cut(s)	78
EheI	GGCGCC	1 cut(s)	78
FaeI	CATG	1 cut(s)	239
FaiI	YATR	4 cut(s)	176, 178, 237, 246
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	1 cut(s)	235
FauI	CCCGC	1 cut(s)	139
FbaI	TGATCA	1 cut(s)	270
Fnu4HI	GCNGC	2 cut(s)	39, 48
FokI	GGATG	1 cut(s)	28
Fsp4HI	GCNGC	2 cut(s)	39, 48
FspBI	CTAG	2 cut(s)	278, 283
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	2 cut(s)	39, 48
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	203
HhaI	GCGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	77
Hin1II	CATG	1 cut(s)	239
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HinfI	GANTC	1 cut(s)	99
Hpy188I	TCNGA	1 cut(s)	214
HpyAV	CCTTC	2 cut(s)	67, 160
HpyCH4IV	ACGT	2 cut(s)	26, 30
HpyCH4V	TGCA	3 cut(s)	10, 207, 222
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 47, 53
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	2 cut(s)	26, 30
Hsp92I	GRCGYC	1 cut(s)	77
Hsp92II	CATG	1 cut(s)	239
HspAI	GCGC	1 cut(s)	77
KasI	GGCGCC	1 cut(s)	76
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	2 cut(s)	255, 270
LmnI	GCTCC	1 cut(s)	171
LpnPI	CCDG	9 cut(s)	27, 59, 95, 141, 155, 166, 182, 217, 243
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	2 cut(s)	278, 283
MaeII	ACGT	2 cut(s)	26, 30
MalI	GATC	2 cut(s)	257, 272
MboI	GATC	2 cut(s)	255, 270
MboII	GAAGA	1 cut(s)	130
Mly113I	GGCGCC	1 cut(s)	77
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	3 cut(s)	71, 134, 220
MspR9I	CCNGG	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	3 cut(s)	44, 47, 53
NarI	GGCGCC	1 cut(s)	77
NdeII	GATC	2 cut(s)	255, 270
NlaIII	CATG	1 cut(s)	239
NlaIV	GGNNCC	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	99
Pfl23II	CGTACG	1 cut(s)	27
PfoI	TCCNGGA	1 cut(s)	168
PkrI	GCNGC	2 cut(s)	40, 49
PluTI	GGCGCC	1 cut(s)	80
Ppu21I	YACGTR	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PspLI	CGTACG	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	78
PstNI	CAGNNNCTG	1 cut(s)	169
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SatI	GCNGC	2 cut(s)	39, 48
Sau3AI	GATC	2 cut(s)	255, 270
ScrFI	CCNGG	1 cut(s)	170
SetI	ASST	6 cut(s)	29, 33, 168, 212, 270, 279
SfaNI	GCATC	1 cut(s)	202
SfoI	GGCGCC	1 cut(s)	78
SsiI	CCGC	5 cut(s)	38, 47, 132, 225, 241
SspDI	GGCGCC	1 cut(s)	76
SspMI	CTAG	2 cut(s)	278, 283
StyD4I	CCNGG	1 cut(s)	168
TaiI	ACGT	2 cut(s)	29, 33
TaqI	TCGA	2 cut(s)	97, 254
TauI	GCSGC	2 cut(s)	41, 50
TfiI	GAWTC	1 cut(s)	99
TscAI	CASTG	1 cut(s)	17
TspDTI	ATGAA	1 cut(s)	130
TspRI	CASTG	1 cut(s)	17
XspI	CTAG	2 cut(s)	278, 283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.