AT3G17780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011123
Physical Location & Seq
Forward (+)
6086909 .. 6088755
1847 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17780.1

Sequence Viewer

Length: 390 bp
ATGGCATTGCAATGGCTGATTCTGTCGTATGTGGTTGCCGCCGAGGTAGCGATCGCCGTCATCTTGACTCTCCCTTACCCAATGCTCCTGAAGAAACGCATCGTATCACTTATCTCGCTCATACTCAATCCTGCCGCTTCCATCGTCGCCTTCGCTGGATTTCAACTCCTCGATATTTACTGGAAGAATGAGCATAGGCTATTGTGCTCATCTGAAGTTTGCACTACTACAGAGCGGGATCGTCACGAGAAATCCGTCTATAAGGCTCAGAGGAATGGGGTTCTGTGTGCGGCTGGGATCCTTCTCTACTGGTGCATCTTCCGCATCTGCAAGTACCACAAAGACCTTGAGCGTTTGGAGCAATTAGAGAAGAGATACAAGGACGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bap31

Protein Analysis

129

Amino Acids

14.96

Weight (kDa)

8.83

Isoelectric Point (pI)

34.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bap31 PF05529 1 - 121 6.3e-06 Bap31/Bap29 transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 235
AciI CCGC 5 cut(s) 39, 135, 235, 290, 322
AclWI GGATC 3 cut(s) 246, 292, 305
AcuI CTGAAG 2 cut(s) 110, 234
AfaI GTAC 1 cut(s) 335
AgsI TTSAA 1 cut(s) 164
Alw21I GWGCWC 1 cut(s) 209
AlwI GGATC 3 cut(s) 246, 292, 305
AsiSI GCGATCGC 1 cut(s) 54
BamHI GGATCC 1 cut(s) 297
BauI CACGAG 1 cut(s) 245
Bbv12I GWGCWC 1 cut(s) 209
BccI CCATC 1 cut(s) 149
BceAI ACGGC 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 228
BisI GCNGC 3 cut(s) 39, 135, 291
BlsI GCNGC 3 cut(s) 40, 136, 292
BmiI GGNNCC 1 cut(s) 299
BmsI GCATC 3 cut(s) 108, 324, 333
BpuEI CTTGAG 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 42
Bse1I ACTGG 2 cut(s) 185, 314
Bse3DI GCAATG 2 cut(s) 5, 17
BseDI CCNNGG 1 cut(s) 42
BseMI GCAATG 2 cut(s) 5, 17
BseMII CTCAG 1 cut(s) 281
BseNI ACTGG 2 cut(s) 185, 314
BseRI GAGGAG 1 cut(s) 158
BseYI CCCAGC 1 cut(s) 293
Bsh1285I CGRYCG 1 cut(s) 54
BsiEI CGRYCG 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 3 cut(s) 51, 238, 297
BspACI CCGC 5 cut(s) 39, 135, 235, 290, 322
BspCNI CTCAG 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 299
BspPI GGATC 3 cut(s) 246, 292, 305
BsrBI CCGCTC 1 cut(s) 235
BsrDI GCAATG 2 cut(s) 5, 17
BsrI ACTGG 2 cut(s) 185, 314
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 3 cut(s) 51, 238, 297
BssSI CACGAG 1 cut(s) 245
Bst2BI CACGAG 1 cut(s) 245
Bst6I CTCTTC 1 cut(s) 365
BstDEI CTNAG 1 cut(s) 267
BstKTI GATC 3 cut(s) 54, 241, 300
BstMBI GATC 3 cut(s) 51, 238, 297
BstMCI CGRYCG 1 cut(s) 54
BstMWI GCNNNNNNNGC 3 cut(s) 47, 321, 358
BstSFI CTRYAG 1 cut(s) 228
BstX2I RGATCY 1 cut(s) 297
BstYI RGATCY 1 cut(s) 297
Csp6I GTAC 1 cut(s) 334
CviJI RGCY 4 cut(s) 16, 199, 266, 293
CviKI_1 RGCY 4 cut(s) 16, 199, 266, 293
CviQI GTAC 1 cut(s) 334
DdeI CTNAG 1 cut(s) 267
DpnI GATC 3 cut(s) 53, 240, 299
DpnII GATC 3 cut(s) 51, 238, 297
Eam1104I CTCTTC 1 cut(s) 365
EarI CTCTTC 1 cut(s) 365
Eco57I CTGAAG 2 cut(s) 110, 234
FaiI YATR 4 cut(s) 30, 122, 195, 261
FauI CCCGC 1 cut(s) 228
Fnu4HI GCNGC 3 cut(s) 39, 135, 291
Fsp4HI GCNGC 3 cut(s) 39, 135, 291
GluI GCNGC 3 cut(s) 39, 135, 291
GsaI CCCAGC 1 cut(s) 297
HinfI GANTC 2 cut(s) 19, 67
Hpy188I TCNGA 2 cut(s) 214, 270
Hpy188III TCNNGA 3 cut(s) 64, 88, 245
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 2 cut(s) 160, 311
HpyCH4V TGCA 4 cut(s) 10, 222, 315, 330
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 321, 358
HpyF3I CTNAG 1 cut(s) 267
Kzo9I GATC 3 cut(s) 51, 238, 297
LmnI GCTCC 2 cut(s) 90, 358
LpnPI CCDG 6 cut(s) 101, 141, 144, 166, 279, 295
LweI GCATC 3 cut(s) 108, 324, 333
MaeIII GTNAC 1 cut(s) 242
MalI GATC 3 cut(s) 53, 240, 299
MbiI CCGCTC 1 cut(s) 235
MboI GATC 3 cut(s) 51, 238, 297
MboII GAAGA 4 cut(s) 103, 196, 310, 382
MflI RGATCY 1 cut(s) 297
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 1 cut(s) 362
MlyI GAGTC 1 cut(s) 61
MnlI CCTC 3 cut(s) 37, 179, 264
MslI CAYNNNNRTG 1 cut(s) 10
MwoI GCNNNNNNNGC 3 cut(s) 47, 321, 358
NdeII GATC 3 cut(s) 51, 238, 297
NlaIV GGNNCC 1 cut(s) 299
NmeAIII GCCGAG 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 242
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PfeI GAWTC 1 cut(s) 19
PkrI GCNGC 3 cut(s) 40, 136, 292
Ple19I CGATCG 1 cut(s) 54
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
PspFI CCCAGC 1 cut(s) 293
PspN4I GGNNCC 1 cut(s) 299
PsuI RGATCY 1 cut(s) 297
PvuI CGATCG 1 cut(s) 54
RgaI GCGATCGC 1 cut(s) 54
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
RseI CAYNNNNRTG 1 cut(s) 10
SatI GCNGC 3 cut(s) 39, 135, 291
Sau3AI GATC 3 cut(s) 51, 238, 297
SchI GAGTC 1 cut(s) 61
SduI GDGCHC 1 cut(s) 209
SetI ASST 2 cut(s) 48, 348
SfaAI GCGATCGC 1 cut(s) 54
SfaNI GCATC 3 cut(s) 108, 324, 333
SfcI CTRYAG 1 cut(s) 228
SgfI GCGATCGC 1 cut(s) 54
SmiMI CAYNNNNRTG 1 cut(s) 10
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 1 cut(s) 362
SsiI CCGC 5 cut(s) 39, 135, 235, 290, 322
TaqI TCGA 1 cut(s) 171
TasI AATT 1 cut(s) 362
TauI GCSGC 3 cut(s) 41, 137, 293
TfiI GAWTC 1 cut(s) 19
TseFI GTSAC 1 cut(s) 242
Tsp45I GTSAC 1 cut(s) 242
TspGWI ACGGA 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.