Rw7G000880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0011123
Physical Location & Seq
Reverse (-)
701682 .. 703203
1522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G000880.1

Sequence Viewer

Length: 390 bp
ATGGCGTTGCAGTGGATGATTCTGACGTACGTGGTGGCGGCAGAGGCGGCCGTAGCCCTTCTGCTAACTCTCCCGGCGCCCAAGCTCTTGAAGAACCGCCTCGTCTCTTTGATCTCTCTCATTCTTCAGCCGGCGCTCTTCGTCGTCCCCTTCGCCGGATTCCAGCTCCTCGATATCTACTGGAAGATGGAGCATCGCTTGATGTGCACCTCAGACATCTGCACTGCTGCTGAGCGCGACCGCTATGAGAAATCCATGTACAAGGCTCAAAAGAATGTAATTCTCTGCTCTGCAGCATGTCTTCTTTACTGGTGCATCTATCGCATCTGTAAGTACTGCAAGGATATTGAAAGGTTGGAGGAAGTGGAGAAGAGGTTCAAGGAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bap31

Protein Analysis

129

Amino Acids

15.04

Weight (kDa)

8.46

Isoelectric Point (pI)

50.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bap31 PF05529 1 - 121 5.1e-06 Bap31/Bap29 transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 76
AccII CGCG 1 cut(s) 237
AciI CCGC 4 cut(s) 38, 47, 97, 241
AcoI YGGCCR 1 cut(s) 48
AcuI CTGAAG 1 cut(s) 110
AcyI GRCGYC 1 cut(s) 77
AfaI GTAC 3 cut(s) 29, 260, 335
AfiI CCNNNNNNNGG 1 cut(s) 155
AgsI TTSAA 3 cut(s) 91, 350, 379
AloI GAACNNNNNNTCC 1 cut(s) 359
AluBI AGCT 2 cut(s) 85, 166
AluI AGCT 2 cut(s) 85, 166
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 1 cut(s) 109
Alw44I GTGCAC 1 cut(s) 205
AoxI GGCC 1 cut(s) 48
ApaLI GTGCAC 1 cut(s) 205
ApeKI GCWGC 2 cut(s) 227, 293
Asp700I GAANNNNTTC 1 cut(s) 374
AspLEI GCGC 3 cut(s) 79, 136, 237
AsuC2I CCSGG 1 cut(s) 74
BaeGI GKGCMC 1 cut(s) 209
BanI GGYRCC 1 cut(s) 76
BbsI GAAGAC 1 cut(s) 293
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 2 cut(s) 214, 305
BccI CCATC 1 cut(s) 181
BceAI ACGGC 1 cut(s) 35
BcnI CCSGG 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 109
BfmI CTRYAG 1 cut(s) 291
BfoI RGCGCY 2 cut(s) 80, 137
BisI GCNGC 4 cut(s) 39, 48, 228, 294
BlpI GCTNAGC 1 cut(s) 231
BlsI GCNGC 4 cut(s) 40, 49, 229, 295
BmcAI AGTACT 1 cut(s) 335
Bme1390I CCNGG 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 74
BmsI GCATC 3 cut(s) 202, 324, 333
BpiI GAAGAC 1 cut(s) 293
Bpu1102I GCTNAGC 1 cut(s) 231
BpuMI CCSGG 1 cut(s) 74
BsaAI YACGTR 1 cut(s) 31
BsaHI GRCGYC 1 cut(s) 77
BsaXI ACNNNNNCTCC 2 cut(s) 359, 389
Bsc4I CCNNNNNNNGG 1 cut(s) 155
Bse118I RCCGGY 1 cut(s) 130
Bse1I ACTGG 2 cut(s) 185, 314
BseGI GGATG 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 155
BseMII CTCAG 2 cut(s) 222, 225
BseNI ACTGG 2 cut(s) 185, 314
BseRI GAGGAG 1 cut(s) 158
BseSI GKGCMC 1 cut(s) 209
BseX3I CGGCCG 1 cut(s) 48
BseXI GCAGC 2 cut(s) 214, 305
BsgI GTGCAG 1 cut(s) 205
Bsh1236I CGCG 1 cut(s) 237
Bsh1285I CGRYCG 2 cut(s) 51, 241
BshFI GGCC 1 cut(s) 50
BshNI GGYRCC 1 cut(s) 76
BsiEI CGRYCG 2 cut(s) 51, 241
BsiHKAI GWGCWC 1 cut(s) 209
BsiSI CCGG 3 cut(s) 74, 131, 156
BsiWI CGTACG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 155
BsmAI GTCTC 1 cut(s) 109
BsmBI CGTCTC 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 209
Bsp1407I TGTACA 1 cut(s) 258
Bsp143I GATC 1 cut(s) 111
Bsp1720I GCTNAGC 1 cut(s) 231
BspACI CCGC 4 cut(s) 38, 47, 97, 241
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 2 cut(s) 223, 224
BspFNI CGCG 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 78
BspMAI CTGCAG 1 cut(s) 295
BspQI GCTCTTC 1 cut(s) 143
BspT107I GGYRCC 1 cut(s) 76
BsrFI RCCGGY 1 cut(s) 130
BsrGI TGTACA 1 cut(s) 258
BsrI ACTGG 2 cut(s) 185, 314
BssAI RCCGGY 1 cut(s) 130
BssMI GATC 1 cut(s) 111
BssNI GRCGYC 1 cut(s) 77
Bst6I CTCTTC 3 cut(s) 143, 365, 378
BstACI GRCGYC 1 cut(s) 77
BstAUI TGTACA 1 cut(s) 258
BstBAI YACGTR 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 2 cut(s) 211, 231
BstF5I GGATG 1 cut(s) 21
BstFNI CGCG 1 cut(s) 237
BstH2I RGCGCY 2 cut(s) 80, 137
BstHHI GCGC 3 cut(s) 79, 136, 237
BstKTI GATC 1 cut(s) 114
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 1 cut(s) 111
BstMCI CGRYCG 2 cut(s) 51, 241
BstMWI GCNNNNNNNGC 5 cut(s) 44, 47, 53, 204, 321
BstNSI RCATGY 1 cut(s) 300
BstSCI CCNGG 1 cut(s) 72
BstSFI CTRYAG 1 cut(s) 291
BstSLI GKGCMC 1 cut(s) 209
BstUI CGCG 1 cut(s) 237
BstV1I GCAGC 2 cut(s) 214, 305
BstV2I GAAGAC 1 cut(s) 293
BstZI CGGCCG 1 cut(s) 48
BsuRI GGCC 1 cut(s) 50
BtgZI GCGATG 1 cut(s) 179
BtsCI GGATG 1 cut(s) 21
BtsI GCAGTG 2 cut(s) 17, 222
BtsIMutI CAGTG 2 cut(s) 17, 222
Cac8I GCNNGC 1 cut(s) 132
CfoI GCGC 3 cut(s) 79, 136, 237
Cfr10I RCCGGY 1 cut(s) 130
Csp6I GTAC 3 cut(s) 28, 259, 334
CviAII CATG 2 cut(s) 256, 297
CviJI RGCY 6 cut(s) 50, 56, 85, 130, 166, 266
CviKI_1 RGCY 6 cut(s) 50, 56, 85, 130, 166, 266
CviQI GTAC 3 cut(s) 28, 259, 334
DdeI CTNAG 2 cut(s) 211, 231
DinI GGCGCC 1 cut(s) 78
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
EaeI YGGCCR 1 cut(s) 48
EagI CGGCCG 1 cut(s) 48
Eam1104I CTCTTC 3 cut(s) 143, 365, 378
EarI CTCTTC 3 cut(s) 143, 365, 378
EclXI CGGCCG 1 cut(s) 48
Eco32I GATATC 1 cut(s) 175
Eco52I CGGCCG 1 cut(s) 48
Eco57I CTGAAG 1 cut(s) 110
EcoRV GATATC 1 cut(s) 175
EgeI GGCGCC 1 cut(s) 78
EheI GGCGCC 1 cut(s) 78
Esp3I CGTCTC 1 cut(s) 109
FaeI CATG 2 cut(s) 259, 300
FaiI YATR 3 cut(s) 246, 257, 298
FaqI GGGAC 1 cut(s) 131
FatI CATG 2 cut(s) 255, 296
Fnu4HI GCNGC 4 cut(s) 39, 48, 228, 294
FokI GGATG 1 cut(s) 28
Fsp4HI GCNGC 4 cut(s) 39, 48, 228, 294
GlaI GCGC 3 cut(s) 78, 135, 236
GluI GCNGC 4 cut(s) 39, 48, 228, 294
HaeII RGCGCY 2 cut(s) 80, 137
HaeIII GGCC 1 cut(s) 50
HapII CCGG 3 cut(s) 74, 131, 156
HhaI GCGC 3 cut(s) 79, 136, 237
Hin1I GRCGYC 1 cut(s) 77
Hin1II CATG 2 cut(s) 259, 300
Hin6I GCGC 3 cut(s) 77, 134, 235
HinP1I GCGC 3 cut(s) 77, 134, 235
HinfI GANTC 2 cut(s) 19, 159
HpaII CCGG 3 cut(s) 74, 131, 156
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 2 cut(s) 24, 214
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 1 cut(s) 207
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 2 cut(s) 68, 160
HpyCH4IV ACGT 2 cut(s) 26, 30
HpyCH4V TGCA 6 cut(s) 10, 207, 222, 293, 315, 339
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 47, 53, 204, 321
HpyF3I CTNAG 2 cut(s) 211, 231
HpySE526I ACGT 2 cut(s) 26, 30
Hsp92I GRCGYC 1 cut(s) 77
Hsp92II CATG 2 cut(s) 259, 300
HspAI GCGC 3 cut(s) 77, 134, 235
KasI GGCGCC 1 cut(s) 76
KroI GCCGGC 1 cut(s) 130
KroNI GCCGGC 1 cut(s) 132
Kzo9I GATC 1 cut(s) 111
LguI GCTCTTC 1 cut(s) 143
LmnI GCTCC 2 cut(s) 171, 190
LpnPI CCDG 6 cut(s) 87, 144, 166, 169, 176, 295
Lsp1109I GCAGC 2 cut(s) 214, 305
LweI GCATC 3 cut(s) 202, 324, 333
MaeII ACGT 2 cut(s) 26, 30
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MboII GAAGA 6 cut(s) 103, 116, 130, 196, 293, 382
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 1 cut(s) 279
Mly113I GGCGCC 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 6 cut(s) 37, 110, 179, 220, 352, 366
MroNI GCCGGC 1 cut(s) 130
MroXI GAANNNNTTC 1 cut(s) 374
MspI CCGG 3 cut(s) 74, 131, 156
MspR9I CCNGG 1 cut(s) 74
MvnI CGCG 1 cut(s) 237
MwoI GCNNNNNNNGC 5 cut(s) 44, 47, 53, 204, 321
NaeI GCCGGC 1 cut(s) 132
NarI GGCGCC 1 cut(s) 77
NciI CCSGG 1 cut(s) 74
NdeII GATC 1 cut(s) 111
NgoMIV GCCGGC 1 cut(s) 130
NlaIII CATG 2 cut(s) 259, 300
NlaIV GGNNCC 1 cut(s) 78
NspI RCATGY 1 cut(s) 300
PciSI GCTCTTC 1 cut(s) 143
PdiI GCCGGC 1 cut(s) 132
PdmI GAANNNNTTC 1 cut(s) 374
PfeI GAWTC 2 cut(s) 19, 159
Pfl23II CGTACG 1 cut(s) 27
PkrI GCNGC 4 cut(s) 40, 49, 229, 295
PluTI GGCGCC 1 cut(s) 80
Ppu21I YACGTR 1 cut(s) 31
PspLI CGTACG 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 78
PstI CTGCAG 1 cut(s) 295
RsaI GTAC 3 cut(s) 29, 260, 335
RsaNI GTAC 3 cut(s) 28, 259, 334
SapI GCTCTTC 1 cut(s) 143
SatI GCNGC 4 cut(s) 39, 48, 228, 294
Sau3AI GATC 1 cut(s) 111
ScaI AGTACT 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 1 cut(s) 209
SetI ASST 7 cut(s) 29, 33, 87, 168, 212, 356, 377
SfaNI GCATC 3 cut(s) 202, 324, 333
SfcI CTRYAG 1 cut(s) 291
SfoI GGCGCC 1 cut(s) 78
Sse9I AATT 1 cut(s) 279
SsiI CCGC 4 cut(s) 38, 47, 97, 241
SspDI GGCGCC 1 cut(s) 76
StyD4I CCNGG 1 cut(s) 72
TaiI ACGT 2 cut(s) 29, 33
TaqI TCGA 1 cut(s) 171
TasI AATT 1 cut(s) 279
TatI WGTACW 2 cut(s) 258, 333
TauI GCSGC 2 cut(s) 41, 50
TfiI GAWTC 2 cut(s) 19, 159
TscAI CASTG 2 cut(s) 17, 229
TseI GCWGC 2 cut(s) 227, 293
TspRI CASTG 2 cut(s) 17, 229
VneI GTGCAC 1 cut(s) 205
XceI RCATGY 1 cut(s) 300
XmnI GAANNNNTTC 1 cut(s) 374
ZrmI AGTACT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.