Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0011123

Physical Location & Seq

Genomic Coordinates Forward (+)

17950510 .. 17952502

Gene Structure 1993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G237300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCGTTGCAGTGGATGATACTGACGTACGTGGTGGCAGCAGAGGCAGCCTTGGCCTTCCTCTTAACCCTTCCCGCGCCCAAGCTCTTGAAGAATCAATTCGTGTCGTTGGTCTCTCTCATCCTCCAACCTGCCCTCTTTATCGTTCCATTCGCCGGCTTTCAGCTCCTTGATATATATTGGAAGAATGAGCACCGCCTGTCCTGCACCTCTGAGATCTGCACCGCTGCTGAGCGTGACCGCTATGAGAAATCCATCTACAAGGCTCAAAGGAATGTAATTCTTTGCGCTTCAGCATGTCTGCTTTACTGTAATCTACAAATGTTGGGCGCAGGTGTCTTGTTCGCATATGCAAATATTACAAGGACATTCAGAATTTGGAAGAAGTTGAGAAGAGGTGCAAGGAGGAGTAGCTTTTCCCAGATAGGCTTTTGTTTGGGAGTAGAAACAACCGAGTTCATAAATTTTTTTTTCATCATAAATGGGAAACCGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bap31

Protein Analysis

166

Amino Acids

18.79

Weight (kDa)

9.51

Isoelectric Point (pI)

52.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48440 AT3G17780
fragaria_vesca	FvH4_5g17720 FvH4_5g23150
malus_domestica	MD06G1232700.v1.1 MD10G1074600.v1.1 MD14G1239700.v1.1
prunus_persica	Prupe.5G237300_v2.0.a1
pyrus_communis	pycom06g20770 pycom14g20130
rosa_chinensis	RchiOBHm_Chr7g0177941
rosa_multiflora	Rmu_sc0002154.1_g000002 Rmu_sc0017005.1_g000002 Rmu_sc0041284.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275390
rosa_rugosa	Rorug06G0411200
rosa_samantha	Rh7AG010300 Rh7CG010800 Rh7DG010600
rosa_wichuraiana	Rw7G000880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	323
Acc36I	ACCTGC	2 cut(s)	139, 323
AccII	CGCG	1 cut(s)	77
AciI	CCGC	4 cut(s)	75, 196, 225, 241
AcsI	RAATTY	2 cut(s)	375, 463
AcuI	CTGAAG	1 cut(s)	276
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	91
AluBI	AGCT	3 cut(s)	85, 166, 414
AluI	AGCT	3 cut(s)	85, 166, 414
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	118
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	3 cut(s)	38, 47, 227
ApoI	RAATTY	2 cut(s)	375, 463
Asp700I	GAANNNNTTC	1 cut(s)	98
AspLEI	GCGC	3 cut(s)	79, 290, 332
BaeI	ACNNNNGTAYC	2 cut(s)	11, 44
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	3 cut(s)	50, 59, 214
BccI	CCATC	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	118
BfuAI	ACCTGC	2 cut(s)	139, 323
BglII	AGATCT	1 cut(s)	216
BisI	GCNGC	3 cut(s)	39, 48, 228
BlpI	GCTNAGC	1 cut(s)	231
BlsI	GCNGC	3 cut(s)	40, 49, 229
Bpu1102I	GCTNAGC	1 cut(s)	231
BsaAI	YACGTR	1 cut(s)	31
BsaI	GGTCTC	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse118I	RCCGGY	1 cut(s)	155
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	2 cut(s)	21, 120
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMII	CTCAG	2 cut(s)	204, 222
BseRI	GAGGAG	1 cut(s)	421
BseXI	GCAGC	3 cut(s)	50, 59, 214
BsgI	GTGCAG	2 cut(s)	190, 205
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	156
BsiWI	CGTACG	1 cut(s)	27
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	1 cut(s)	118
BsnI	GGCC	1 cut(s)	56
Bso31I	GGTCTC	1 cut(s)	118
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	216
Bsp1720I	GCTNAGC	1 cut(s)	231
BspACI	CCGC	4 cut(s)	75, 196, 225, 241
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	2 cut(s)	205, 223
BspFNI	CGCG	1 cut(s)	77
BspMI	ACCTGC	2 cut(s)	139, 323
BspTNI	GGTCTC	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	1 cut(s)	216
BssT1I	CCWWGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	311
Bst6I	CTCTTC	1 cut(s)	388
BstBAI	YACGTR	1 cut(s)	31
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	2 cut(s)	213, 231
BstF5I	GGATG	2 cut(s)	21, 120
BstFNI	CGCG	1 cut(s)	77
BstHHI	GCGC	3 cut(s)	79, 290, 332
BstKTI	GATC	1 cut(s)	219
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	216
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 47, 53, 204
BstNSI	RCATGY	1 cut(s)	300
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	3 cut(s)	50, 59, 214
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
BsuRI	GGCC	1 cut(s)	56
BtsCI	GGATG	2 cut(s)	21, 120
BtsI	GCAGTG	1 cut(s)	17
BtsIMutI	CAGTG	1 cut(s)	17
BveI	ACCTGC	2 cut(s)	139, 323
Cac8I	GCNNGC	1 cut(s)	157
CfoI	GCGC	3 cut(s)	79, 290, 332
Cfr10I	RCCGGY	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	1 cut(s)	297
CviJI	RGCY	8 cut(s)	50, 56, 85, 159, 166, 266, 414, 429
CviKI_1	RGCY	8 cut(s)	50, 56, 85, 159, 166, 266, 414, 429
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	2 cut(s)	213, 231
DpnI	GATC	1 cut(s)	218
DpnII	GATC	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	388
EarI	CTCTTC	1 cut(s)	388
Eco130I	CCWWGG	1 cut(s)	51
Eco31I	GGTCTC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	1 cut(s)	300
FaiI	YATR	8 cut(s)	176, 178, 246, 298, 349, 351, 461, 479
FatI	CATG	1 cut(s)	296
FauI	CCCGC	1 cut(s)	82
FauNDI	CATATG	1 cut(s)	349
Fnu4HI	GCNGC	3 cut(s)	39, 48, 228
FokI	GGATG	2 cut(s)	28, 107
Fsp4HI	GCNGC	3 cut(s)	39, 48, 228
GlaI	GCGC	3 cut(s)	78, 289, 331
GluI	GCNGC	3 cut(s)	39, 48, 228
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	1 cut(s)	156
HhaI	GCGC	3 cut(s)	79, 290, 332
Hin1II	CATG	1 cut(s)	300
Hin6I	GCGC	3 cut(s)	77, 288, 330
HinP1I	GCGC	3 cut(s)	77, 288, 330
HinfI	GANTC	1 cut(s)	94
HpaII	CCGG	1 cut(s)	156
Hpy188I	TCNGA	2 cut(s)	214, 374
Hpy188III	TCNNGA	1 cut(s)	88
HpyAV	CCTTC	2 cut(s)	67, 80
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4IV	ACGT	2 cut(s)	26, 30
HpyCH4V	TGCA	5 cut(s)	10, 207, 222, 353, 401
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 47, 53, 204
HpyF3I	CTNAG	2 cut(s)	213, 231
HpySE526I	ACGT	2 cut(s)	26, 30
Hsp92II	CATG	1 cut(s)	300
HspAI	GCGC	3 cut(s)	77, 288, 330
KroI	GCCGGC	1 cut(s)	155
KroNI	GCCGGC	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	216
LmnI	GCTCC	1 cut(s)	171
LpnPI	CCDG	6 cut(s)	144, 169, 212, 217, 318, 434
Lsp1109I	GCAGC	3 cut(s)	50, 59, 214
MaeII	ACGT	2 cut(s)	26, 30
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	1 cut(s)	218
MboI	GATC	1 cut(s)	216
MboII	GAAGA	4 cut(s)	103, 196, 394, 405
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	4 cut(s)	98, 279, 375, 463
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	7 cut(s)	37, 71, 134, 146, 220, 389, 399
MroNI	GCCGGC	1 cut(s)	155
MroXI	GAANNNNTTC	1 cut(s)	98
MseI	TTAA	1 cut(s)	65
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	1 cut(s)	156
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	4 cut(s)	44, 47, 53, 204
NaeI	GCCGGC	1 cut(s)	157
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	1 cut(s)	216
NgoMIV	GCCGGC	1 cut(s)	155
NlaIII	CATG	1 cut(s)	300
NmuCI	GTSAC	1 cut(s)	236
NspI	RCATGY	1 cut(s)	300
PaqCI	CACCTGC	1 cut(s)	323
PdiI	GCCGGC	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	94
Pfl23II	CGTACG	1 cut(s)	27
PkrI	GCNGC	3 cut(s)	40, 49, 229
Ppu21I	YACGTR	1 cut(s)	31
PspLI	CGTACG	1 cut(s)	27
PsuI	RGATCY	1 cut(s)	216
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	3 cut(s)	39, 48, 228
Sau3AI	GATC	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	9 cut(s)	29, 33, 87, 133, 168, 212, 337, 400, 416
Sse9I	AATT	4 cut(s)	98, 279, 375, 463
SsiI	CCGC	4 cut(s)	75, 196, 225, 241
SspI	AATATT	1 cut(s)	358
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	311
TaiI	ACGT	2 cut(s)	29, 33
TasI	AATT	4 cut(s)	98, 279, 375, 463
TfiI	GAWTC	1 cut(s)	94
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TscAI	CASTG	1 cut(s)	17
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	3 cut(s)	38, 47, 227
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	2 cut(s)	448, 463
TspRI	CASTG	1 cut(s)	17
XapI	RAATTY	2 cut(s)	375, 463
XceI	RCATGY	1 cut(s)	300
XmnI	GAANNNNTTC	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.