Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0011123

Physical Location & Seq

Genomic Coordinates Forward (+)

21238971 .. 21240779

Gene Structure 1809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g20130.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGGGTTGCAGTGGATGATATTGACGTACGTGGTGGCGGCAGAGGCGGCGTTGTCCTTTCTCCTAACCATTCCGGCGCCCAAGCTGTTGAAGAATCGATTCGTGTCGCTGGTCTCTCTAATCCTCCAACCCGCCCTCTTCATCGTCCCCTTCGCCGGATTTCAGCTCCTGGATATATACTGGAAGAATGAGCACCGGTTGGCCTGCACCTCTGATATCTGCACTGCCTCTGAGCGTGACCGCTATGAGAAATCGATGTACAAGGCTCAAAGGAATGTAATTCTTTGTGCTTCAGCATGTCTGCTTTACTGGTGTCTATTTCGCATCTGTAAATTGTGCAAGGACATTCAGAACTTGGAGGAAGTGGAGAAGAGGTACAAGGACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bap31

Protein Analysis

130

Amino Acids

14.99

Weight (kDa)

8.86

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48440 AT3G17780
fragaria_vesca	FvH4_5g17720 FvH4_5g23150
malus_domestica	MD06G1232700.v1.1 MD10G1074600.v1.1 MD14G1239700.v1.1
prunus_persica	Prupe.5G237300_v2.0.a1
pyrus_communis	pycom06g20770 pycom14g20130
rosa_chinensis	RchiOBHm_Chr7g0177941
rosa_multiflora	Rmu_sc0002154.1_g000002 Rmu_sc0017005.1_g000002 Rmu_sc0041284.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275390
rosa_rugosa	Rorug06G0411200
rosa_samantha	Rh7AG010300 Rh7CG010800 Rh7DG010600
rosa_wichuraiana	Rw7G000880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	76
AciI	CCGC	4 cut(s)	38, 47, 132, 241
AcuI	CTGAAG	1 cut(s)	276
AcyI	GRCGYC	1 cut(s)	77
AfaI	GTAC	3 cut(s)	29, 260, 377
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgeI	ACCGGT	1 cut(s)	195
AgsI	TTSAA	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	2 cut(s)	85, 166
AluI	AGCT	2 cut(s)	85, 166
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	118
AlwNI	CAGNNNCTG	1 cut(s)	169
AoxI	GGCC	1 cut(s)	201
AsiGI	ACCGGT	1 cut(s)	195
Asp700I	GAANNNNTTC	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	76
Bbv12I	GWGCWC	1 cut(s)	195
BciT130I	CCWGG	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	118
BfoI	RGCGCY	1 cut(s)	80
BisI	GCNGC	2 cut(s)	39, 48
BlsI	GCNGC	2 cut(s)	40, 49
Bme1390I	CCNGG	1 cut(s)	170
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	170
BmsI	GCATC	1 cut(s)	333
Bsa29I	ATCGAT	2 cut(s)	97, 254
BsaAI	YACGTR	1 cut(s)	31
BsaHI	GRCGYC	1 cut(s)	77
BsaI	GGTCTC	1 cut(s)	118
BsaWI	WCCGGW	1 cut(s)	195
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse118I	RCCGGY	1 cut(s)	195
Bse1I	ACTGG	2 cut(s)	185, 314
BseBI	CCWGG	1 cut(s)	170
BseCI	ATCGAT	2 cut(s)	97, 254
BseGI	GGATG	1 cut(s)	21
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	2 cut(s)	185, 314
BsgI	GTGCAG	2 cut(s)	190, 205
BshFI	GGCC	1 cut(s)	203
BshNI	GGYRCC	1 cut(s)	76
BshTI	ACCGGT	1 cut(s)	195
BshVI	ATCGAT	2 cut(s)	97, 254
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	3 cut(s)	74, 156, 196
BsiWI	CGTACG	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	203
Bso31I	GGTCTC	1 cut(s)	118
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp1407I	TGTACA	1 cut(s)	258
BspACI	CCGC	4 cut(s)	38, 47, 132, 241
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	223
BspDI	ATCGAT	2 cut(s)	97, 254
BspLI	GGNNCC	1 cut(s)	78
BspT107I	GGYRCC	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	195
BsrGI	TGTACA	1 cut(s)	258
BsrI	ACTGG	2 cut(s)	185, 314
BssAI	RCCGGY	1 cut(s)	195
BssNI	GRCGYC	1 cut(s)	77
Bst2UI	CCWGG	1 cut(s)	170
Bst6I	CTCTTC	2 cut(s)	143, 365
BstACI	GRCGYC	1 cut(s)	77
BstAUI	TGTACA	1 cut(s)	258
BstBAI	YACGTR	1 cut(s)	31
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	21
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	79
BstMAI	GTCTC	1 cut(s)	118
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 47
BstNI	CCWGG	1 cut(s)	170
BstNSI	RCATGY	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	168
Bsu15I	ATCGAT	2 cut(s)	97, 254
BsuRI	GGCC	1 cut(s)	203
BsuTUI	ATCGAT	2 cut(s)	97, 254
BtsCI	GGATG	1 cut(s)	21
BtsI	GCAGTG	2 cut(s)	17, 222
BtsIMutI	CAGTG	2 cut(s)	17, 222
Cac8I	GCNNGC	1 cut(s)	205
CaiI	CAGNNNCTG	1 cut(s)	169
CfoI	GCGC	1 cut(s)	79
Cfr10I	RCCGGY	1 cut(s)	195
ClaI	ATCGAT	2 cut(s)	97, 254
Csp6I	GTAC	3 cut(s)	28, 259, 376
CspAI	ACCGGT	1 cut(s)	195
CviAII	CATG	1 cut(s)	297
CviJI	RGCY	4 cut(s)	85, 166, 203, 266
CviKI_1	RGCY	4 cut(s)	85, 166, 203, 266
CviQI	GTAC	3 cut(s)	28, 259, 376
DdeI	CTNAG	1 cut(s)	231
DinI	GGCGCC	1 cut(s)	78
Eam1104I	CTCTTC	2 cut(s)	143, 365
EarI	CTCTTC	2 cut(s)	143, 365
Eco31I	GGTCTC	1 cut(s)	118
Eco32I	GATATC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	276
EcoRII	CCWGG	1 cut(s)	168
EcoRV	GATATC	1 cut(s)	217
EgeI	GGCGCC	1 cut(s)	78
EheI	GGCGCC	1 cut(s)	78
FaeI	CATG	1 cut(s)	300
FaiI	YATR	4 cut(s)	176, 178, 246, 298
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	1 cut(s)	296
FauI	CCCGC	1 cut(s)	139
Fnu4HI	GCNGC	2 cut(s)	39, 48
FokI	GGATG	1 cut(s)	28
Fsp4HI	GCNGC	2 cut(s)	39, 48
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	2 cut(s)	39, 48
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	3 cut(s)	74, 156, 196
HhaI	GCGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	77
Hin1II	CATG	1 cut(s)	300
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HinfI	GANTC	2 cut(s)	94, 99
HpaII	CCGG	3 cut(s)	74, 156, 196
Hpy188I	TCNGA	3 cut(s)	214, 232, 351
HpyAV	CCTTC	1 cut(s)	160
HpyCH4IV	ACGT	2 cut(s)	26, 30
HpyCH4V	TGCA	4 cut(s)	10, 207, 222, 339
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 47
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	2 cut(s)	26, 30
Hsp92I	GRCGYC	1 cut(s)	77
Hsp92II	CATG	1 cut(s)	300
HspAI	GCGC	1 cut(s)	77
KasI	GGCGCC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	171
LpnPI	CCDG	9 cut(s)	87, 95, 155, 166, 169, 182, 209, 217, 295
LweI	GCATC	1 cut(s)	333
MaeII	ACGT	2 cut(s)	26, 30
MaeIII	GTNAC	1 cut(s)	236
MboII	GAAGA	4 cut(s)	103, 130, 196, 382
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	2 cut(s)	279, 332
Mly113I	GGCGCC	1 cut(s)	77
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	7 cut(s)	37, 134, 146, 220, 238, 352, 366
MroXI	GAANNNNTTC	1 cut(s)	98
MspI	CCGG	3 cut(s)	74, 156, 196
MspR9I	CCNGG	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	2 cut(s)	44, 47
NarI	GGCGCC	1 cut(s)	77
NlaIII	CATG	1 cut(s)	300
NlaIV	GGNNCC	1 cut(s)	78
NmuCI	GTSAC	1 cut(s)	236
NspI	RCATGY	1 cut(s)	300
PdmI	GAANNNNTTC	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	94, 99
Pfl23II	CGTACG	1 cut(s)	27
PfoI	TCCNGGA	1 cut(s)	168
PinAI	ACCGGT	1 cut(s)	195
PkrI	GCNGC	2 cut(s)	40, 49
PluTI	GGCGCC	1 cut(s)	80
Ppu21I	YACGTR	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PspLI	CGTACG	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	78
PstNI	CAGNNNCTG	1 cut(s)	169
RsaI	GTAC	3 cut(s)	29, 260, 377
RsaNI	GTAC	3 cut(s)	28, 259, 376
SatI	GCNGC	2 cut(s)	39, 48
ScrFI	CCNGG	1 cut(s)	170
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	6 cut(s)	29, 33, 87, 168, 212, 377
SfaNI	GCATC	1 cut(s)	333
SfoI	GGCGCC	1 cut(s)	78
Sse9I	AATT	2 cut(s)	279, 332
SsiI	CCGC	4 cut(s)	38, 47, 132, 241
SspDI	GGCGCC	1 cut(s)	76
StyD4I	CCNGG	1 cut(s)	168
TaiI	ACGT	2 cut(s)	29, 33
TaqI	TCGA	2 cut(s)	97, 254
TasI	AATT	2 cut(s)	279, 332
TatI	WGTACW	1 cut(s)	258
TauI	GCSGC	2 cut(s)	41, 50
TfiI	GAWTC	2 cut(s)	94, 99
TscAI	CASTG	2 cut(s)	17, 229
TseFI	GTSAC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	1 cut(s)	130
TspRI	CASTG	2 cut(s)	17, 229
XceI	RCATGY	1 cut(s)	300
XmnI	GAANNNNTTC	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.