Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0011123

Physical Location & Seq

Genomic Coordinates Forward (+)

23664255 .. 23666068

Gene Structure 1814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g20770.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCATTGCAGTGGATGATACTGACGTACGTAGTGGCGGCAGAGGCGGCGTTGGCCTTCCTGCTAACCATTCCGGCGCCCAAGCCGTTGAAGAATCGATTCGTGTCGCTGGTCTCTCTAATCCTCCAACCCGCCCTCTTCATCGTCCCCTTCGCCGGATTTCAGCTGCTGGATATATATTGGAAGAATGAGCACCGCTTGGCCTGCACCTCTGAGACTTGCACCGCCTCTGACCGTGACCGCTATGAGAAATCCCTTTACAAGGCTCAAAGGAATGTAATTCTTTGTGCTTCAGCATGTCTGCTTTACTGGTGTCTCTTTCGCATCTGTAAATATTACAAGGACATTCAGAACTTGGAGGAAGTGGAGAAGAGGTACAAGGACGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bap31

Protein Analysis

130

Amino Acids

15.05

Weight (kDa)

8.52

Isoelectric Point (pI)

47.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48440 AT3G17780
fragaria_vesca	FvH4_5g17720 FvH4_5g23150
malus_domestica	MD06G1232700.v1.1 MD10G1074600.v1.1 MD14G1239700.v1.1
prunus_persica	Prupe.5G237300_v2.0.a1
pyrus_communis	pycom06g20770 pycom14g20130
rosa_chinensis	RchiOBHm_Chr7g0177941
rosa_multiflora	Rmu_sc0002154.1_g000002 Rmu_sc0017005.1_g000002 Rmu_sc0041284.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275390
rosa_rugosa	Rorug06G0411200
rosa_samantha	Rh7AG010300 Rh7CG010800 Rh7DG010600
rosa_wichuraiana	Rw7G000880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	76
AciI	CCGC	6 cut(s)	38, 47, 132, 196, 225, 241
AcuI	CTGAAG	1 cut(s)	276
AcyI	GRCGYC	1 cut(s)	77
AfaI	GTAC	2 cut(s)	29, 377
AfiI	CCNNNNNNNGG	2 cut(s)	155, 262
AgsI	TTSAA	1 cut(s)	91
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	3 cut(s)	118, 209, 320
AlwNI	CAGNNNCTG	1 cut(s)	169
AoxI	GGCC	2 cut(s)	54, 201
ApeKI	GCWGC	1 cut(s)	166
Asp700I	GAANNNNTTC	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	79
BaeI	ACNNNNGTAYC	2 cut(s)	11, 44
BanI	GGYRCC	1 cut(s)	76
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	153
BceAI	ACGGC	1 cut(s)	70
BcoDI	GTCTC	3 cut(s)	118, 209, 320
BfoI	RGCGCY	1 cut(s)	80
BisI	GCNGC	3 cut(s)	39, 48, 167
BlsI	GCNGC	3 cut(s)	40, 49, 168
BmiI	GGNNCC	1 cut(s)	78
BmsI	GCATC	1 cut(s)	333
Bsa29I	ATCGAT	1 cut(s)	97
BsaAI	YACGTR	1 cut(s)	31
BsaHI	GRCGYC	1 cut(s)	77
BsaI	GGTCTC	1 cut(s)	118
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 262
Bse1I	ACTGG	1 cut(s)	314
Bse3DI	GCAATG	1 cut(s)	5
BseCI	ATCGAT	1 cut(s)	97
BseGI	GGATG	1 cut(s)	21
BseLI	CCNNNNNNNGG	2 cut(s)	155, 262
BseMI	GCAATG	1 cut(s)	5
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	314
BseXI	GCAGC	1 cut(s)	153
BsgI	GTGCAG	1 cut(s)	190
BshFI	GGCC	2 cut(s)	56, 203
BshNI	GGYRCC	1 cut(s)	76
BshVI	ATCGAT	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	2 cut(s)	74, 156
BsiWI	CGTACG	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	2 cut(s)	155, 262
BsmAI	GTCTC	3 cut(s)	118, 209, 320
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	2 cut(s)	56, 203
Bso31I	GGTCTC	1 cut(s)	118
Bsp1286I	GDGCHC	1 cut(s)	195
BspACI	CCGC	6 cut(s)	38, 47, 132, 196, 225, 241
BspANI	GGCC	2 cut(s)	56, 203
BspCNI	CTCAG	1 cut(s)	205
BspDI	ATCGAT	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	78
BspT107I	GGYRCC	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	314
BssNI	GRCGYC	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	236
Bst6I	CTCTTC	2 cut(s)	143, 365
BstACI	GRCGYC	1 cut(s)	77
BstBAI	YACGTR	1 cut(s)	31
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	1 cut(s)	213
BstENI	CCTNNNNNAGG	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	21
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	79
BstMAI	GTCTC	3 cut(s)	118, 209, 320
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 47, 53, 204
BstNSI	RCATGY	1 cut(s)	300
BstSNI	TACGTA	1 cut(s)	31
BstV1I	GCAGC	1 cut(s)	153
Bsu15I	ATCGAT	1 cut(s)	97
BsuRI	GGCC	2 cut(s)	56, 203
BsuTUI	ATCGAT	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	21
BtsI	GCAGTG	1 cut(s)	17
BtsIMutI	CAGTG	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	205
CaiI	CAGNNNCTG	1 cut(s)	169
CfoI	GCGC	1 cut(s)	79
ClaI	ATCGAT	1 cut(s)	97
Csp6I	GTAC	2 cut(s)	28, 376
CviAII	CATG	1 cut(s)	297
CviJI	RGCY	5 cut(s)	56, 85, 166, 203, 266
CviKI_1	RGCY	5 cut(s)	56, 85, 166, 203, 266
CviQI	GTAC	2 cut(s)	28, 376
DdeI	CTNAG	1 cut(s)	213
DinI	GGCGCC	1 cut(s)	78
Eam1104I	CTCTTC	2 cut(s)	143, 365
EarI	CTCTTC	2 cut(s)	143, 365
Eco105I	TACGTA	1 cut(s)	31
Eco31I	GGTCTC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	276
EcoNI	CCTNNNNNAGG	1 cut(s)	260
EgeI	GGCGCC	1 cut(s)	78
EheI	GGCGCC	1 cut(s)	78
FaeI	CATG	1 cut(s)	300
FaiI	YATR	4 cut(s)	176, 178, 246, 298
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	1 cut(s)	296
FauI	CCCGC	1 cut(s)	139
Fnu4HI	GCNGC	3 cut(s)	39, 48, 167
FokI	GGATG	1 cut(s)	28
Fsp4HI	GCNGC	3 cut(s)	39, 48, 167
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	3 cut(s)	39, 48, 167
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	2 cut(s)	56, 203
HapII	CCGG	2 cut(s)	74, 156
HhaI	GCGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	77
Hin1II	CATG	1 cut(s)	300
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HinfI	GANTC	2 cut(s)	94, 99
HpaII	CCGG	2 cut(s)	74, 156
Hpy188I	TCNGA	3 cut(s)	214, 232, 351
HpyAV	CCTTC	2 cut(s)	67, 160
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4IV	ACGT	2 cut(s)	26, 30
HpyCH4V	TGCA	3 cut(s)	10, 207, 222
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 47, 53, 204
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	2 cut(s)	26, 30
Hsp92I	GRCGYC	1 cut(s)	77
Hsp92II	CATG	1 cut(s)	300
HspAI	GCGC	1 cut(s)	77
KasI	GGCGCC	1 cut(s)	76
LpnPI	CCDG	7 cut(s)	74, 87, 95, 155, 169, 217, 295
Lsp1109I	GCAGC	1 cut(s)	153
LweI	GCATC	1 cut(s)	333
MaeII	ACGT	2 cut(s)	26, 30
MaeIII	GTNAC	1 cut(s)	236
MboII	GAAGA	4 cut(s)	103, 130, 196, 382
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	1 cut(s)	279
Mly113I	GGCGCC	1 cut(s)	77
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	7 cut(s)	37, 134, 146, 220, 238, 352, 366
MroXI	GAANNNNTTC	1 cut(s)	98
MslI	CAYNNNNRTG	1 cut(s)	10
MspA1I	CMGCKG	1 cut(s)	166
MspI	CCGG	2 cut(s)	74, 156
MwoI	GCNNNNNNNGC	4 cut(s)	44, 47, 53, 204
NarI	GGCGCC	1 cut(s)	77
NlaIII	CATG	1 cut(s)	300
NlaIV	GGNNCC	1 cut(s)	78
NmuCI	GTSAC	1 cut(s)	236
NspI	RCATGY	1 cut(s)	300
PdmI	GAANNNNTTC	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	94, 99
Pfl23II	CGTACG	1 cut(s)	27
PkrI	GCNGC	3 cut(s)	40, 49, 168
PluTI	GGCGCC	1 cut(s)	80
Ppu21I	YACGTR	1 cut(s)	31
PspLI	CGTACG	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	78
PstNI	CAGNNNCTG	1 cut(s)	169
PvuII	CAGCTG	1 cut(s)	166
RsaI	GTAC	2 cut(s)	29, 377
RsaNI	GTAC	2 cut(s)	28, 376
RseI	CAYNNNNRTG	1 cut(s)	10
SatI	GCNGC	3 cut(s)	39, 48, 167
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	5 cut(s)	29, 33, 168, 212, 377
SfaNI	GCATC	1 cut(s)	333
SfoI	GGCGCC	1 cut(s)	78
SmiMI	CAYNNNNRTG	1 cut(s)	10
SnaBI	TACGTA	1 cut(s)	31
Sse9I	AATT	1 cut(s)	279
SsiI	CCGC	6 cut(s)	38, 47, 132, 196, 225, 241
SspDI	GGCGCC	1 cut(s)	76
SspI	AATATT	1 cut(s)	335
TaaI	ACNGT	1 cut(s)	236
TaiI	ACGT	2 cut(s)	29, 33
TaqI	TCGA	1 cut(s)	97
TasI	AATT	1 cut(s)	279
TauI	GCSGC	2 cut(s)	41, 50
TfiI	GAWTC	2 cut(s)	94, 99
TscAI	CASTG	1 cut(s)	17
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	1 cut(s)	130
TspRI	CASTG	1 cut(s)	17
XagI	CCTNNNNNAGG	1 cut(s)	260
XceI	RCATGY	1 cut(s)	300
XmnI	GAANNNNTTC	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.