AT1G48750

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007035
Physical Location & Seq
Forward (+)
18035967 .. 18036510
544 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G48750.1

Sequence Viewer

Length: 285 bp
ATGGTGAAGGTGATGTGGGTTTCCGTTTTAGCTCTGGCGGCGGCGATTCTCCTTTTGACGGTCCCGGTGGCAGAAGGGGTGACGTGCTCGCCTATGCAGCTGGCTTCATGTGCGGCGGCGATGACGTCATCGTCGCCGCCATCGGAGGCGTGTTGCACAAAGCTGAGAGAGCAGCAGCCATGCCTTTGTGGGTACATGAGGAACCCTACCCTCCGCCAATACGTTAGCTCCCCTAACGCAAGGAAAGTCTCCAACAGTTGCAAGATTCCTTCCCCAAGCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

94

Amino Acids

9.94

Weight (kDa)

8.9

Isoelectric Point (pI)

78.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 22 - 92 6.7e-07 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 130
AatII GACGTC 1 cut(s) 128
AciI CCGC 6 cut(s) 38, 41, 113, 116, 137, 214
AcyI GRCGYC 1 cut(s) 125
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 58
AjiI CACGTC 1 cut(s) 84
AluBI AGCT 5 cut(s) 32, 100, 163, 228, 279
AluI AGCT 5 cut(s) 32, 100, 163, 228, 279
Alw21I GWGCWC 1 cut(s) 89
Alw26I GTCTC 1 cut(s) 253
ApeKI GCWGC 3 cut(s) 97, 172, 175
AspS9I GGNCC 1 cut(s) 61
AsuC2I CCSGG 1 cut(s) 65
AsuHPI GGTGA 3 cut(s) 16, 22, 91
AvaII GGWCC 1 cut(s) 61
Bbv12I GWGCWC 1 cut(s) 89
BbvI GCAGC 3 cut(s) 109, 184, 187
BccI CCATC 1 cut(s) 148
BcnI CCSGG 1 cut(s) 65
BcoDI GTCTC 1 cut(s) 253
BisI GCNGC 8 cut(s) 39, 42, 98, 114, 117, 137, 173, 176
BlsI GCNGC 8 cut(s) 40, 43, 99, 115, 118, 138, 174, 177
Bme1390I CCNGG 1 cut(s) 65
Bme18I GGWCC 1 cut(s) 61
BmgBI CACGTC 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 61
BmiI GGNNCC 2 cut(s) 63, 203
BmrFI CCNGG 1 cut(s) 65
BpuMI CCSGG 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 125
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bsc4I CCNNNNNNNGG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 155
BseXI GCAGC 3 cut(s) 109, 184, 187
BsiHKAI GWGCWC 1 cut(s) 89
BsiSI CCGG 1 cut(s) 65
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 253
BsmFI GGGAC 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 89
BspACI CCGC 6 cut(s) 38, 41, 113, 116, 137, 214
BspCNI CTCAG 1 cut(s) 156
BspLI GGNNCC 2 cut(s) 63, 203
BssNI GRCGYC 1 cut(s) 125
Bst4CI ACNGT 2 cut(s) 61, 257
BstACI GRCGYC 1 cut(s) 125
BstC8I GCNNGC 2 cut(s) 89, 102
BstDEI CTNAG 1 cut(s) 164
BstMAI GTCTC 1 cut(s) 253
BstMWI GCNNNNNNNGC 4 cut(s) 38, 97, 110, 169
BstSCI CCNGG 1 cut(s) 63
BstV1I GCAGC 3 cut(s) 109, 184, 187
BtgZI GCGATG 1 cut(s) 134
BtrI CACGTC 1 cut(s) 84
Cac8I GCNNGC 2 cut(s) 89, 102
Cfr13I GGNCC 1 cut(s) 61
Csp6I GTAC 1 cut(s) 193
CviAII CATG 3 cut(s) 108, 180, 196
CviJI RGCY 7 cut(s) 32, 100, 104, 163, 178, 228, 279
CviKI_1 RGCY 7 cut(s) 32, 100, 104, 163, 178, 228, 279
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 1 cut(s) 164
DrdI GACNNNNNNGTC 1 cut(s) 130
DseDI GACNNNNNNGTC 1 cut(s) 130
EciI GGCGGA 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 61
FaeI CATG 3 cut(s) 111, 183, 199
FaiI YATR 4 cut(s) 95, 109, 181, 197
FaqI GGGAC 1 cut(s) 47
FatI CATG 3 cut(s) 107, 179, 195
Fnu4HI GCNGC 8 cut(s) 39, 42, 98, 114, 117, 137, 173, 176
Fsp4HI GCNGC 8 cut(s) 39, 42, 98, 114, 117, 137, 173, 176
GluI GCNGC 8 cut(s) 39, 42, 98, 114, 117, 137, 173, 176
HapII CCGG 1 cut(s) 65
Hin1I GRCGYC 1 cut(s) 125
Hin1II CATG 3 cut(s) 111, 183, 199
HinfI GANTC 2 cut(s) 46, 265
HpaII CCGG 1 cut(s) 65
HphI GGTGA 3 cut(s) 16, 22, 91
Hpy188I TCNGA 1 cut(s) 145
Hpy99I CGWCG 1 cut(s) 136
HpyAV CCTTC 2 cut(s) 68, 279
HpyCH4III ACNGT 2 cut(s) 61, 257
HpyCH4IV ACGT 3 cut(s) 83, 125, 222
HpyCH4V TGCA 3 cut(s) 97, 156, 261
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 97, 110, 169
HpyF3I CTNAG 1 cut(s) 164
HpySE526I ACGT 3 cut(s) 83, 125, 222
Hsp92I GRCGYC 1 cut(s) 125
Hsp92II CATG 3 cut(s) 111, 183, 199
LmnI GCTCC 1 cut(s) 233
LpnPI CCDG 3 cut(s) 20, 78, 86
Lsp1109I GCAGC 3 cut(s) 109, 184, 187
MaeII ACGT 3 cut(s) 83, 125, 222
MaeIII GTNAC 1 cut(s) 79
MhlI GDGCHC 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 276
MnlI CCTC 3 cut(s) 139, 192, 221
MseI TTAA 1 cut(s) 283
MspA1I CMGCKG 1 cut(s) 100
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 65
MwoI GCNNNNNNNGC 4 cut(s) 38, 97, 110, 169
NciI CCSGG 1 cut(s) 65
NlaIII CATG 3 cut(s) 111, 183, 199
NlaIV GGNNCC 2 cut(s) 63, 203
NmuCI GTSAC 1 cut(s) 79
PfeI GAWTC 2 cut(s) 46, 265
PkrI GCNGC 8 cut(s) 40, 43, 99, 115, 118, 138, 174, 177
PspN4I GGNNCC 2 cut(s) 63, 203
PspPI GGNCC 1 cut(s) 61
PvuII CAGCTG 1 cut(s) 100
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SaqAI TTAA 1 cut(s) 283
SatI GCNGC 8 cut(s) 39, 42, 98, 114, 117, 137, 173, 176
Sau96I GGNCC 1 cut(s) 61
ScrFI CCNGG 1 cut(s) 65
SduI GDGCHC 1 cut(s) 89
SetI ASST 9 cut(s) 12, 34, 86, 102, 128, 165, 225, 230, 281
SinI GGWCC 1 cut(s) 61
SsiI CCGC 6 cut(s) 38, 41, 113, 116, 137, 214
StyD4I CCNGG 1 cut(s) 63
TaaI ACNGT 2 cut(s) 61, 257
TaiI ACGT 3 cut(s) 86, 128, 225
TauI GCSGC 5 cut(s) 41, 44, 116, 119, 139
TfiI GAWTC 2 cut(s) 46, 265
Tru1I TTAA 1 cut(s) 283
Tru9I TTAA 1 cut(s) 283
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 3 cut(s) 97, 172, 175
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 96
TspGWI ACGGA 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 61
ZraI GACGTC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.