pycom09g17140

Nonspecific lipid-transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0007035
Physical Location & Seq
Reverse (-)
17570632 .. 17570919
288 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g17140.1

Sequence Viewer

Length: 288 bp
ATGAAGCTGTCATCGCGCAGTTTGGTGTTGTGTTTGGCGGTGGCAGTGGTGCTTTGCGAAGTGGCTGGGACGGCGGAGGCAGTGACATGCAGTCCGGTGGAGTTGAGCCCATGCTTGGGGCCAATAAGGTCAGGGTCAGCCCCTTCAGGCACTTGCTGCCAGAAGCTGAGGGAGCAGAGGCCTTGCCTCTGCGGCTACATCAAGAACCCAGCCCTCAGGACATACGTCACCAGCCCCAACGCCAGAAAACTTGCTTCTGCTTGCGGCGTTCCGACCCCTCAATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

96

Amino Acids

9.85

Weight (kDa)

8.92

Isoelectric Point (pI)

56.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 22 - 93 4.2e-08 Probable lipid transfer
Tryp_alpha_amyl PF00234 34 - 95 1.1e-11 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 16
AciI CCGC 4 cut(s) 38, 74, 192, 264
AcuI CTGAAG 1 cut(s) 129
AfiI CCNNNNNNNGG 2 cut(s) 115, 116
AhdI GACNNNNNGTC 1 cut(s) 90
AluBI AGCT 2 cut(s) 7, 166
AluI AGCT 2 cut(s) 7, 166
AlwNI CAGNNNCTG 1 cut(s) 166
AoxI GGCC 2 cut(s) 119, 179
ApeKI GCWGC 1 cut(s) 156
AspLEI GCGC 1 cut(s) 18
AspS9I GGNCC 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 220
AxyI CCTNAGG 1 cut(s) 215
BanII GRGCYC 1 cut(s) 110
BbvCI CCTCAGC 1 cut(s) 167
BbvI GCAGC 1 cut(s) 143
BceAI ACGGC 1 cut(s) 87
BglI GCCNNNNNGGC 1 cut(s) 192
BisI GCNGC 3 cut(s) 157, 193, 265
BlsI GCNGC 3 cut(s) 158, 194, 266
BmeRI GACNNNNNGTC 1 cut(s) 90
BmgT120I GGNCC 1 cut(s) 119
BmiI GGNNCC 1 cut(s) 120
BoxI GACNNNNGTC 1 cut(s) 224
Bpu10I CCTNAGC 1 cut(s) 167
BsaWI WCCGGW 1 cut(s) 94
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 116
Bse21I CCTNAGG 1 cut(s) 215
BseLI CCNNNNNNNGG 2 cut(s) 115, 116
BseMII CTCAG 2 cut(s) 158, 229
BseXI GCAGC 1 cut(s) 143
BseYI CCCAGC 2 cut(s) 65, 208
Bsh1236I CGCG 1 cut(s) 16
BshFI GGCC 2 cut(s) 121, 181
BsiSI CCGG 1 cut(s) 95
BslFI GGGAC 1 cut(s) 82
BslI CCNNNNNNNGG 2 cut(s) 115, 116
BsmFI GGGAC 1 cut(s) 82
BsnI GGCC 2 cut(s) 121, 181
Bsp1286I GDGCHC 1 cut(s) 110
BspACI CCGC 4 cut(s) 38, 74, 192, 264
BspANI GGCC 2 cut(s) 121, 181
BspCNI CTCAG 2 cut(s) 159, 228
BspFNI CGCG 1 cut(s) 16
BspLI GGNNCC 1 cut(s) 120
BstAPI GCANNNNNTGC 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 262
BstDEI CTNAG 2 cut(s) 167, 215
BstFNI CGCG 1 cut(s) 16
BstHHI GCGC 1 cut(s) 18
BstMWI GCNNNNNNNGC 5 cut(s) 13, 71, 156, 172, 192
BstNSI RCATGY 1 cut(s) 90
BstPAI GACNNNNGTC 1 cut(s) 224
BstUI CGCG 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 143
Bsu36I CCTNAGG 1 cut(s) 215
BsuRI GGCC 2 cut(s) 121, 181
BtsI GCAGTG 2 cut(s) 51, 87
BtsIMutI CAGTG 2 cut(s) 51, 87
Cac8I GCNNGC 1 cut(s) 262
CaiI CAGNNNCTG 1 cut(s) 166
CfoI GCGC 1 cut(s) 18
Cfr13I GGNCC 1 cut(s) 119
CviAII CATG 2 cut(s) 87, 111
DdeI CTNAG 2 cut(s) 167, 215
DriI GACNNNNNGTC 1 cut(s) 90
Eam1105I GACNNNNNGTC 1 cut(s) 90
EciI GGCGGA 1 cut(s) 89
Eco147I AGGCCT 1 cut(s) 181
Eco24I GRGCYC 1 cut(s) 110
Eco57I CTGAAG 1 cut(s) 129
Eco81I CCTNAGG 1 cut(s) 215
EcoT38I GRGCYC 1 cut(s) 110
FaeI CATG 2 cut(s) 90, 114
FaiI YATR 3 cut(s) 88, 112, 223
FaqI GGGAC 1 cut(s) 82
FatI CATG 2 cut(s) 86, 110
Fnu4HI GCNGC 3 cut(s) 157, 193, 265
FriOI GRGCYC 1 cut(s) 110
Fsp4HI GCNGC 3 cut(s) 157, 193, 265
GlaI GCGC 1 cut(s) 17
GluI GCNGC 3 cut(s) 157, 193, 265
GsaI CCCAGC 2 cut(s) 69, 212
HaeIII GGCC 2 cut(s) 121, 181
HapII CCGG 1 cut(s) 95
HhaI GCGC 1 cut(s) 18
Hin1II CATG 2 cut(s) 90, 114
Hin6I GCGC 1 cut(s) 16
HinP1I GCGC 1 cut(s) 16
HpaII CCGG 1 cut(s) 95
HphI GGTGA 1 cut(s) 220
Hpy188I TCNGA 1 cut(s) 273
Hpy188III TCNNGA 2 cut(s) 202, 217
HpyAV CCTTC 1 cut(s) 153
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 1 cut(s) 90
HpyF10VI GCNNNNNNNGC 5 cut(s) 13, 71, 156, 172, 192
HpyF3I CTNAG 2 cut(s) 167, 215
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 2 cut(s) 90, 114
HspAI GCGC 1 cut(s) 16
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 9 cut(s) 51, 108, 117, 132, 173, 202, 222, 244, 256
Lsp1109I GCAGC 1 cut(s) 143
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 2 cut(s) 82, 226
MhlI GDGCHC 1 cut(s) 110
MnlI CCTC 6 cut(s) 70, 162, 171, 197, 224, 288
MspI CCGG 1 cut(s) 95
MvnI CGCG 1 cut(s) 16
MwoI GCNNNNNNNGC 5 cut(s) 13, 71, 156, 172, 192
NlaIII CATG 2 cut(s) 90, 114
NlaIV GGNNCC 1 cut(s) 120
NmuCI GTSAC 2 cut(s) 82, 226
NspI RCATGY 1 cut(s) 90
PceI AGGCCT 1 cut(s) 181
PkrI GCNGC 3 cut(s) 158, 194, 266
PshAI GACNNNNGTC 1 cut(s) 224
PspFI CCCAGC 2 cut(s) 65, 208
PspN4I GGNNCC 1 cut(s) 120
PspPI GGNCC 1 cut(s) 119
PstNI CAGNNNCTG 1 cut(s) 166
SatI GCNGC 3 cut(s) 157, 193, 265
Sau96I GGNCC 1 cut(s) 119
SduI GDGCHC 1 cut(s) 110
SetI ASST 4 cut(s) 9, 131, 168, 228
SseBI AGGCCT 1 cut(s) 181
SsiI CCGC 4 cut(s) 38, 74, 192, 264
StuI AGGCCT 1 cut(s) 181
TaiI ACGT 1 cut(s) 228
TauI GCSGC 2 cut(s) 195, 267
TscAI CASTG 2 cut(s) 51, 87
TseFI GTSAC 2 cut(s) 82, 226
TseI GCWGC 1 cut(s) 156
Tsp45I GTSAC 2 cut(s) 82, 226
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 51, 87
XceI RCATGY 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.