Prupe.3G147800_v2.0.a1

Nonspecific lipid-transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0007035
Physical Location & Seq
Reverse (-)
16183003 .. 16183554
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G147800.1

Sequence Viewer

Length: 297 bp
ATGATGAAGTTGTCATATTCAGGCGTGGCCCTGTGTGTGGTGGTGATGGTGGCAGTGATGCTAAGTGAAGAGGCAAGGATGGCAGAGGCAGTGACATGCAGCCCAGTGCAGTTGAGCCCATGCTTGGGCCCAATAAATTCAGGGTCACCTCCTTCAACCACATGCTGCCAGAAACTGAGGGAGCAGAGGCCTTGCCTTTGTGGATATCTCAAGAACCCAAGCCTCAGGCAATATGTCAACAGCCCCAACGCCAGAAAACTTGCTTCCAACTGTGGTGTTCCCGTCCCTCAATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

99

Amino Acids

10.46

Weight (kDa)

8.82

Isoelectric Point (pI)

53.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 136
AfiI CCNNNNNNNGG 3 cut(s) 37, 124, 125
AgsI TTSAA 1 cut(s) 156
AlwNI CAGNNNCTG 1 cut(s) 175
AoxI GGCC 3 cut(s) 27, 127, 188
ApaI GGGCCC 1 cut(s) 131
ApeKI GCWGC 2 cut(s) 99, 165
ApoI RAATTY 1 cut(s) 136
AspS9I GGNCC 3 cut(s) 28, 127, 128
AsuHPI GGTGA 2 cut(s) 55, 138
AxyI CCTNAGG 1 cut(s) 224
BaeGI GKGCMC 1 cut(s) 131
BanII GRGCYC 2 cut(s) 119, 131
BbvI GCAGC 2 cut(s) 111, 152
BccI CCATC 2 cut(s) 40, 73
BisI GCNGC 2 cut(s) 100, 166
BlsI GCNGC 2 cut(s) 101, 167
BmgT120I GGNCC 3 cut(s) 28, 127, 128
BmiI GGNNCC 1 cut(s) 129
BmrI ACTGGG 1 cut(s) 98
BmsI GCATC 1 cut(s) 48
BmuI ACTGGG 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 194
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 124, 125
Bse1I ACTGG 1 cut(s) 104
Bse21I CCTNAGG 1 cut(s) 224
BseGI GGATG 1 cut(s) 84
BseLI CCNNNNNNNGG 3 cut(s) 37, 124, 125
BseMII CTCAG 2 cut(s) 167, 238
BseNI ACTGG 1 cut(s) 104
BseSI GKGCMC 1 cut(s) 131
BseXI GCAGC 2 cut(s) 111, 152
BsgI GTGCAG 1 cut(s) 128
BshFI GGCC 3 cut(s) 29, 129, 190
BslFI GGGAC 1 cut(s) 269
BslI CCNNNNNNNGG 3 cut(s) 37, 124, 125
BsmFI GGGAC 1 cut(s) 269
BsnI GGCC 3 cut(s) 29, 129, 190
Bsp120I GGGCCC 1 cut(s) 127
Bsp1286I GDGCHC 2 cut(s) 119, 131
BspANI GGCC 3 cut(s) 29, 129, 190
BspCNI CTCAG 2 cut(s) 168, 237
BspLI GGNNCC 1 cut(s) 129
BsrI ACTGG 1 cut(s) 104
Bst4CI ACNGT 1 cut(s) 272
Bst6I CTCTTC 1 cut(s) 63
BstDEI CTNAG 3 cut(s) 62, 176, 224
BstEII GGTNACC 1 cut(s) 144
BstF5I GGATG 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNSI RCATGY 2 cut(s) 99, 165
BstPI GGTNACC 1 cut(s) 144
BstSLI GKGCMC 1 cut(s) 131
BstV1I GCAGC 2 cut(s) 111, 152
Bsu36I CCTNAGG 1 cut(s) 224
BsuRI GGCC 3 cut(s) 29, 129, 190
BtsCI GGATG 1 cut(s) 84
BtsI GCAGTG 2 cut(s) 60, 96
BtsIMutI CAGTG 3 cut(s) 60, 96, 111
CaiI CAGNNNCTG 1 cut(s) 175
Cfr13I GGNCC 3 cut(s) 28, 127, 128
CviAII CATG 3 cut(s) 96, 120, 162
CviJI RGCY 7 cut(s) 29, 102, 117, 129, 190, 222, 243
CviKI_1 RGCY 7 cut(s) 29, 102, 117, 129, 190, 222, 243
DdeI CTNAG 3 cut(s) 62, 176, 224
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco147I AGGCCT 1 cut(s) 190
Eco24I GRGCYC 2 cut(s) 119, 131
Eco32I GATATC 1 cut(s) 206
Eco81I CCTNAGG 1 cut(s) 224
Eco91I GGTNACC 1 cut(s) 144
EcoO65I GGTNACC 1 cut(s) 144
EcoRV GATATC 1 cut(s) 206
EcoT38I GRGCYC 2 cut(s) 119, 131
FaeI CATG 3 cut(s) 99, 123, 165
FaiI YATR 5 cut(s) 16, 97, 121, 163, 234
FaqI GGGAC 1 cut(s) 269
FatI CATG 3 cut(s) 95, 119, 161
Fnu4HI GCNGC 2 cut(s) 100, 166
FokI GGATG 1 cut(s) 91
FriOI GRGCYC 2 cut(s) 119, 131
Fsp4HI GCNGC 2 cut(s) 100, 166
GluI GCNGC 2 cut(s) 100, 166
HaeIII GGCC 3 cut(s) 29, 129, 190
Hin1II CATG 3 cut(s) 99, 123, 165
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HphI GGTGA 2 cut(s) 55, 138
Hpy166II GTNNAC 1 cut(s) 238
Hpy188III TCNNGA 1 cut(s) 211
Hpy8I GTNNAC 1 cut(s) 238
HpyAV CCTTC 1 cut(s) 162
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4V TGCA 2 cut(s) 99, 109
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 3 cut(s) 62, 176, 224
Hsp92II CATG 3 cut(s) 99, 123, 165
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 7 cut(s) 6, 44, 117, 126, 182, 211, 265
Lsp1109I GCAGC 2 cut(s) 111, 152
LweI GCATC 1 cut(s) 48
MaeIII GTNAC 2 cut(s) 91, 144
MboII GAAGA 1 cut(s) 80
MhlI GDGCHC 2 cut(s) 119, 131
MluCI AATT 1 cut(s) 136
MmeI TCCRAC 1 cut(s) 291
MnlI CCTC 7 cut(s) 64, 79, 159, 171, 180, 233, 297
MseI TTAA 1 cut(s) 295
MwoI GCNNNNNNNGC 1 cut(s) 80
NlaIII CATG 3 cut(s) 99, 123, 165
NlaIV GGNNCC 1 cut(s) 129
NmuCI GTSAC 2 cut(s) 91, 144
NspI RCATGY 2 cut(s) 99, 165
PceI AGGCCT 1 cut(s) 190
PkrI GCNGC 2 cut(s) 101, 167
PspEI GGTNACC 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 129
PspOMI GGGCCC 1 cut(s) 127
PspPI GGNCC 3 cut(s) 28, 127, 128
PstNI CAGNNNCTG 1 cut(s) 175
SaqAI TTAA 1 cut(s) 295
SatI GCNGC 2 cut(s) 100, 166
Sau96I GGNCC 3 cut(s) 28, 127, 128
SduI GDGCHC 2 cut(s) 119, 131
SetI ASST 1 cut(s) 151
SfaNI GCATC 1 cut(s) 48
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 1 cut(s) 136
SseBI AGGCCT 1 cut(s) 190
StuI AGGCCT 1 cut(s) 190
TaaI ACNGT 1 cut(s) 272
TasI AATT 1 cut(s) 136
Tru1I TTAA 1 cut(s) 295
Tru9I TTAA 1 cut(s) 295
TscAI CASTG 3 cut(s) 60, 96, 111
TseFI GTSAC 2 cut(s) 91, 144
TseI GCWGC 2 cut(s) 99, 165
Tsp45I GTSAC 2 cut(s) 91, 144
TspDTI ATGAA 1 cut(s) 20
TspRI CASTG 3 cut(s) 60, 96, 111
XapI RAATTY 1 cut(s) 136
XceI RCATGY 2 cut(s) 99, 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.