Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0007035

Physical Location & Seq

Genomic Coordinates Reverse (-)

32717155 .. 32717442

Gene Structure 288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1255700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAAGCAGTCATTGCGCAGTTTGGTGTTGTGTTTGGCGGTGGCGGTGGTGCTTTGCGAAGTGGCGAGGACGGCAGAGGCAGTGACATGCAGTCCGGTGGAGTTGAGCCCATGCCTGGGGCCAATAAGGTCAGGGTCAGCCCCTTCAGGCACTTGCTGCCAGAAGCTGAGGGAGCAGAGGCCTTGCCTCTGCGGGTACATCAAGAACCCAGCCCTCAGGACATACGTCACTAGCCCCAACGCCAGAAAACTTGCTTCTGCCTGCGGCGTTCCCACCCCTCAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

96

Amino Acids

9.99

Weight (kDa)

9.07

Isoelectric Point (pI)

63.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	19 - 93	4.8e-08	Probable lipid transfer
Tryp_alpha_amyl	PF00234	34 - 95	2e-11	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48750 AT3G18280 AT3G18280 AT5G38160 AT5G38170
fragaria_vesca	FvH4_1g30410 FvH4_1g30410
malus_domestica	MD09G1255700.v1.1 MD09G1255800.v1.1 MD17G1248900.v1.1
prunus_persica	Prupe.3G147800_v2.0.a1 Prupe.3G147900_v2.0.a1
pyrus_communis	pycom09g17140
rosa_chinensis	RchiOBHm_Chr3g0490631
rosa_laevigata	RLG00000022878
rosa_multiflora	Rmu_sc0003456.1_g000006 Rmu_sc0012075.1_g000001
rosa_roxburghii	Rroxscaffold_6G00393350
rosa_rugosa	Rorug03G0244900 Rorug04G0070900
rosa_samantha	Rh3AG294200 Rh3BG330400 Rh3CG328000 Rh3DG327300
rosa_wichuraiana	Rw3G026020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	17
AciI	CCGC	4 cut(s)	38, 44, 192, 264
AcuI	CTGAAG	1 cut(s)	129
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	2 cut(s)	115, 116
AhdI	GACNNNNNGTC	1 cut(s)	90
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
AlwNI	CAGNNNCTG	1 cut(s)	166
AoxI	GGCC	2 cut(s)	119, 179
ApeKI	GCWGC	1 cut(s)	156
AspLEI	GCGC	1 cut(s)	18
AspS9I	GGNCC	1 cut(s)	119
AxyI	CCTNAGG	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	110
BbvCI	CCTCAGC	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	87
BciT130I	CCWGG	1 cut(s)	116
BfaI	CTAG	1 cut(s)	231
BisI	GCNGC	2 cut(s)	157, 265
BlsI	GCNGC	2 cut(s)	158, 266
Bme1390I	CCNGG	1 cut(s)	116
BmeRI	GACNNNNNGTC	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	116
BoxI	GACNNNNGTC	1 cut(s)	224
Bpu10I	CCTNAGC	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	115
BsaWI	WCCGGW	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 116
Bse21I	CCTNAGG	1 cut(s)	215
Bse3DI	GCAATG	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	115
BseLI	CCNNNNNNNGG	2 cut(s)	115, 116
BseMI	GCAATG	1 cut(s)	11
BseMII	CTCAG	2 cut(s)	158, 229
BseXI	GCAGC	1 cut(s)	143
BseYI	CCCAGC	1 cut(s)	208
BshFI	GGCC	2 cut(s)	121, 181
BsiSI	CCGG	1 cut(s)	95
BslI	CCNNNNNNNGG	2 cut(s)	115, 116
BsnI	GGCC	2 cut(s)	121, 181
Bsp1286I	GDGCHC	1 cut(s)	110
BspACI	CCGC	4 cut(s)	38, 44, 192, 264
BspANI	GGCC	2 cut(s)	121, 181
BspCNI	CTCAG	2 cut(s)	159, 228
BspLI	GGNNCC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	116
BstAPI	GCANNNNNTGC	2 cut(s)	13, 156
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	2 cut(s)	167, 215
BstHHI	GCGC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 71, 156, 172
BstNI	CCWGG	1 cut(s)	116
BstNSI	RCATGY	1 cut(s)	90
BstPAI	GACNNNNGTC	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	114
BstV1I	GCAGC	1 cut(s)	143
Bsu36I	CCTNAGG	1 cut(s)	215
BsuRI	GGCC	2 cut(s)	121, 181
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	262
CaiI	CAGNNNCTG	1 cut(s)	166
CfoI	GCGC	1 cut(s)	18
Cfr13I	GGNCC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	2 cut(s)	87, 111
CviJI	RGCY	7 cut(s)	108, 121, 140, 166, 181, 212, 234
CviKI_1	RGCY	7 cut(s)	108, 121, 140, 166, 181, 212, 234
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	2 cut(s)	167, 215
DriI	GACNNNNNGTC	1 cut(s)	90
Eam1105I	GACNNNNNGTC	1 cut(s)	90
Eco147I	AGGCCT	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	110
Eco57I	CTGAAG	1 cut(s)	129
Eco81I	CCTNAGG	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	114
EcoT38I	GRGCYC	1 cut(s)	110
FaeI	CATG	2 cut(s)	90, 114
FaiI	YATR	3 cut(s)	88, 112, 223
FatI	CATG	2 cut(s)	86, 110
FauI	CCCGC	1 cut(s)	185
Fnu4HI	GCNGC	2 cut(s)	157, 265
FriOI	GRGCYC	1 cut(s)	110
Fsp4HI	GCNGC	2 cut(s)	157, 265
FspBI	CTAG	1 cut(s)	231
FspI	TGCGCA	1 cut(s)	17
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	2 cut(s)	157, 265
GsaI	CCCAGC	1 cut(s)	212
HaeIII	GGCC	2 cut(s)	121, 181
HapII	CCGG	1 cut(s)	95
HhaI	GCGC	1 cut(s)	18
Hin1II	CATG	2 cut(s)	90, 114
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HpaII	CCGG	1 cut(s)	95
Hpy188III	TCNNGA	2 cut(s)	202, 217
HpyAV	CCTTC	1 cut(s)	153
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	1 cut(s)	90
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 71, 156, 172
HpyF3I	CTNAG	2 cut(s)	167, 215
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	2 cut(s)	90, 114
HspAI	GCGC	1 cut(s)	16
LmnI	GCTCC	1 cut(s)	172
Lsp1109I	GCAGC	1 cut(s)	143
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	2 cut(s)	82, 226
MhlI	GDGCHC	1 cut(s)	110
MnlI	CCTC	7 cut(s)	60, 70, 162, 171, 197, 224, 288
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	4 cut(s)	13, 71, 156, 172
NlaIII	CATG	2 cut(s)	90, 114
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	2 cut(s)	82, 226
NsbI	TGCGCA	1 cut(s)	17
NspI	RCATGY	1 cut(s)	90
PceI	AGGCCT	1 cut(s)	181
PkrI	GCNGC	2 cut(s)	158, 266
PshAI	GACNNNNGTC	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	114
PspFI	CCCAGC	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	119
PstNI	CAGNNNCTG	1 cut(s)	166
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SatI	GCNGC	2 cut(s)	157, 265
Sau96I	GGNCC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	110
SetI	ASST	3 cut(s)	131, 168, 228
SseBI	AGGCCT	1 cut(s)	181
SsiI	CCGC	4 cut(s)	38, 44, 192, 264
SspMI	CTAG	1 cut(s)	231
StuI	AGGCCT	1 cut(s)	181
StyD4I	CCNGG	1 cut(s)	114
TaiI	ACGT	1 cut(s)	228
TauI	GCSGC	1 cut(s)	267
TscAI	CASTG	1 cut(s)	87
TseFI	GTSAC	2 cut(s)	82, 226
TseI	GCWGC	1 cut(s)	156
Tsp45I	GTSAC	2 cut(s)	82, 226
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	87
XceI	RCATGY	1 cut(s)	90
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.