Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0007035

Physical Location & Seq

Genomic Coordinates Reverse (-)

24113956 .. 24115043

Gene Structure 1088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g30410.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTGCAAAGAATATTACAGCCATGAAAACCGCAAGGGATCAGACCTCTATCTTCTCTCTTTTTTTTGCTTCTCCATTTCTCTGATTCGCGATATAGATCGACTGAATTCGAAGAAGAAGATGAAGTTGTCAACTCGCAGTAGTGTGTCGGTATTGGTACTTGTATTCATCATCTTCACGAGTAGTGCTACTGCAGACTTGGTGCTGGTGGCAGCAGAGGTAGATACGACATGCAGTCCGGTGGAGTTGAGTTCATGTTTAGATCCAATCCAGTACGGTTCAAAGCCGTCAAGCATCTGCTGCCAGAAGCTCAAGGGGCAGGTTCCATGCCTCTGTGGATACATCAAGAATCCTGCTTTCAAGAAATATGTGACAGGTCCCAATGCCCAAAAACTATCCTCCAACTGCGGAGTTCCTTTCCCTCGTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

144

Amino Acids

15.78

Weight (kDa)

9.03

Isoelectric Point (pI)

25.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	25 - 99	2e-09	Probable lipid transfer
Tryp_alpha_amyl	PF00234	42 - 103	4.7e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48750 AT3G18280 AT3G18280 AT5G38160 AT5G38170
fragaria_vesca	FvH4_1g30410 FvH4_1g30410
malus_domestica	MD09G1255700.v1.1 MD09G1255800.v1.1 MD17G1248900.v1.1
prunus_persica	Prupe.3G147800_v2.0.a1 Prupe.3G147900_v2.0.a1
pyrus_communis	pycom09g17140
rosa_chinensis	RchiOBHm_Chr3g0490631
rosa_laevigata	RLG00000022878
rosa_multiflora	Rmu_sc0003456.1_g000006 Rmu_sc0012075.1_g000001
rosa_roxburghii	Rroxscaffold_6G00393350
rosa_rugosa	Rorug03G0244900 Rorug04G0070900
rosa_samantha	Rh3AG294200 Rh3BG330400 Rh3CG328000 Rh3DG327300
rosa_wichuraiana	Rw3G026020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	310
AccII	CGCG	1 cut(s)	90
AciI	CCGC	2 cut(s)	31, 408
AclWI	GGATC	2 cut(s)	46, 257
AcsI	RAATTY	1 cut(s)	106
AfaI	GTAC	2 cut(s)	159, 275
AgsI	TTSAA	2 cut(s)	282, 361
AhdI	GACNNNNNGTC	1 cut(s)	234
AluBI	AGCT	1 cut(s)	310
AluI	AGCT	1 cut(s)	310
AlwI	GGATC	2 cut(s)	46, 257
ApeKI	GCWGC	2 cut(s)	212, 300
ApoI	RAATTY	1 cut(s)	106
AspS9I	GGNCC	1 cut(s)	377
AsuII	TTCGAA	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	377
BauI	CACGAG	1 cut(s)	178
BbvI	GCAGC	2 cut(s)	224, 287
BceAI	ACGGC	1 cut(s)	271
BciVI	GTATCC	1 cut(s)	332
BfmI	CTRYAG	1 cut(s)	192
BfuAI	ACCTGC	1 cut(s)	310
BfuI	GTATCC	1 cut(s)	332
BisI	GCNGC	2 cut(s)	213, 301
BlsI	GCNGC	2 cut(s)	214, 302
Bme18I	GGWCC	1 cut(s)	377
BmeRI	GACNNNNNGTC	1 cut(s)	234
BmgT120I	GGNCC	1 cut(s)	377
BmiI	GGNNCC	2 cut(s)	324, 379
BmsI	GCATC	1 cut(s)	303
Bpu14I	TTCGAA	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	296
BsaBI	GATNNNNATC	1 cut(s)	96
BsaWI	WCCGGW	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	271
Bse8I	GATNNNNATC	1 cut(s)	96
BseJI	GATNNNNATC	1 cut(s)	96
BseNI	ACTGG	1 cut(s)	271
BseXI	GCAGC	2 cut(s)	224, 287
Bsh1236I	CGCG	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	363
BsmFI	GGGAC	1 cut(s)	363
Bsp119I	TTCGAA	1 cut(s)	110
Bsp143I	GATC	3 cut(s)	38, 97, 262
Bsp68I	TCGCGA	1 cut(s)	90
BspACI	CCGC	2 cut(s)	31, 408
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	2 cut(s)	324, 379
BspMAI	CTGCAG	1 cut(s)	196
BspMI	ACCTGC	1 cut(s)	310
BspPI	GGATC	2 cut(s)	46, 257
BspT104I	TTCGAA	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	271
BssMI	GATC	3 cut(s)	38, 97, 262
BssSI	CACGAG	1 cut(s)	178
Bst2BI	CACGAG	1 cut(s)	178
Bst4CI	ACNGT	1 cut(s)	278
BstAPI	GCANNNNNTGC	1 cut(s)	300
BstBI	TTCGAA	1 cut(s)	110
BstFNI	CGCG	1 cut(s)	90
BstKTI	GATC	3 cut(s)	41, 100, 265
BstMBI	GATC	3 cut(s)	38, 97, 262
BstMWI	GCNNNNNNNGC	2 cut(s)	300, 316
BstNSI	RCATGY	1 cut(s)	234
BstSFI	CTRYAG	1 cut(s)	192
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	224, 287
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BsuI	GTATCC	1 cut(s)	332
BtuMI	TCGCGA	1 cut(s)	90
BveI	ACCTGC	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	377
Csp6I	GTAC	2 cut(s)	158, 274
CviAII	CATG	4 cut(s)	23, 231, 255, 327
CviJI	RGCY	3 cut(s)	21, 286, 310
CviKI_1	RGCY	3 cut(s)	21, 286, 310
CviQI	GTAC	2 cut(s)	158, 274
DpnI	GATC	3 cut(s)	40, 99, 264
DpnII	GATC	3 cut(s)	38, 97, 262
DriI	GACNNNNNGTC	1 cut(s)	234
Eam1105I	GACNNNNNGTC	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	377
EcoO109I	RGGNCCY	1 cut(s)	377
EcoRI	GAATTC	1 cut(s)	106
FaeI	CATG	4 cut(s)	26, 234, 258, 330
FaiI	YATR	6 cut(s)	24, 95, 232, 256, 328, 369
FaqI	GGGAC	1 cut(s)	363
FatI	CATG	4 cut(s)	22, 230, 254, 326
Fnu4HI	GCNGC	2 cut(s)	213, 301
Fsp4HI	GCNGC	2 cut(s)	213, 301
GluI	GCNGC	2 cut(s)	213, 301
HapII	CCGG	1 cut(s)	239
Hin1II	CATG	4 cut(s)	26, 234, 258, 330
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HinfI	GANTC	2 cut(s)	85, 349
HpaII	CCGG	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	2 cut(s)	43, 84
Hpy188III	TCNNGA	4 cut(s)	89, 178, 346, 361
Hpy8I	GTNNAC	1 cut(s)	132
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4V	TGCA	3 cut(s)	6, 194, 234
HpyF10VI	GCNNNNNNNGC	2 cut(s)	300, 316
Hsp92II	CATG	4 cut(s)	26, 234, 258, 330
Kzo9I	GATC	3 cut(s)	38, 97, 262
LpnPI	CCDG	7 cut(s)	191, 252, 284, 305, 317, 360, 366
Lsp1109I	GCAGC	2 cut(s)	224, 287
LweI	GCATC	1 cut(s)	303
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	3 cut(s)	40, 99, 264
MboI	GATC	3 cut(s)	38, 97, 262
MboII	GAAGA	5 cut(s)	44, 124, 127, 130, 166
MflI	RGATCY	1 cut(s)	262
MluCI	AATT	1 cut(s)	106
MmeI	TCCRAC	1 cut(s)	426
MnlI	CCTC	5 cut(s)	56, 211, 341, 409, 432
MseI	TTAA	1 cut(s)	430
MspI	CCGG	1 cut(s)	239
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	2 cut(s)	300, 316
NdeII	GATC	3 cut(s)	38, 97, 262
NlaIII	CATG	4 cut(s)	26, 234, 258, 330
NlaIV	GGNNCC	2 cut(s)	324, 379
NmuCI	GTSAC	1 cut(s)	370
NruI	TCGCGA	1 cut(s)	90
NspI	RCATGY	1 cut(s)	234
NspV	TTCGAA	1 cut(s)	110
PfeI	GAWTC	2 cut(s)	85, 349
PkrI	GCNGC	2 cut(s)	214, 302
PpuMI	RGGWCCY	1 cut(s)	377
Psp5II	RGGWCCY	1 cut(s)	377
PspN4I	GGNNCC	2 cut(s)	324, 379
PspPI	GGNCC	1 cut(s)	377
PspPPI	RGGWCCY	1 cut(s)	377
PstI	CTGCAG	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	262
RruI	TCGCGA	1 cut(s)	90
RsaI	GTAC	2 cut(s)	159, 275
RsaNI	GTAC	2 cut(s)	158, 274
SaqAI	TTAA	1 cut(s)	430
SatI	GCNGC	2 cut(s)	213, 301
Sau3AI	GATC	3 cut(s)	38, 97, 262
Sau96I	GGNCC	1 cut(s)	377
SetI	ASST	5 cut(s)	48, 222, 312, 324, 379
SfaNI	GCATC	1 cut(s)	303
SfcI	CTRYAG	1 cut(s)	192
SfuI	TTCGAA	1 cut(s)	110
SinI	GGWCC	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	1 cut(s)	106
SsiI	CCGC	2 cut(s)	31, 408
SspI	AATATT	1 cut(s)	14
TaaI	ACNGT	1 cut(s)	278
TaqI	TCGA	2 cut(s)	100, 110
TasI	AATT	1 cut(s)	106
TfiI	GAWTC	2 cut(s)	85, 349
Tru1I	TTAA	1 cut(s)	430
Tru9I	TTAA	1 cut(s)	430
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	2 cut(s)	212, 300
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	4 cut(s)	39, 137, 157, 243
VpaK11BI	GGWCC	1 cut(s)	377
XapI	RAATTY	1 cut(s)	106
XceI	RCATGY	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.