Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0007035

Physical Location & Seq

Genomic Coordinates Forward (+)

13973797 .. 13974593

Gene Structure 797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022878

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGTTCGGCATTACTTAATTCTGGTAGTTTCCAAGCTGTTACGGTTTTGGAGTCACGTGACATGGACTCATGGAGGACTCTTTTCTTCGGGGGATGACAAAATCCGCCACCGCATTCTGTCTTTAAGTCTGAAAATATGGCATGGCAGTGGAGTAGACGTTACCATCCTCCTCCTTTTAGCAATGCAGAAACAGAAGAAGAAGATGAAGTTATCAACTAGGAGCGGCATGTCGGTTTTGGTACTTGTATTCATCATCTTCATGAGTAGTGCCACTACAGACTTGGTGATGGTCGCAGCAGGCCGAGTACCGGAGCTTGCACACCAGGCAGCTGTGGCAGATACGACATGCGATCCGGTGCAGTTGAGTCCATGCTTAGATCCAATCCAGCATGGTTCGAAGCCATCGAGCACCTGCTGCCAGAAGCTCAAGGAGCAGCTTCCATGCCTCTGTGGATACATCAAGAACCCAGCCTTCAAGCAATATGTCACCGGTCCCAACGCCGAAAAACTCTCTGCCAACTGTGGTGTTCCCTACCCTCGCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

183

Amino Acids

20.06

Weight (kDa)

9.46

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	106 - 178	1.6e-09	Probable lipid transfer
Tryp_alpha_amyl	PF00234	120 - 182	9.7e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48750 AT3G18280 AT3G18280 AT5G38160 AT5G38170
fragaria_vesca	FvH4_1g30410 FvH4_1g30410
malus_domestica	MD09G1255700.v1.1 MD09G1255800.v1.1 MD17G1248900.v1.1
prunus_persica	Prupe.3G147800_v2.0.a1 Prupe.3G147900_v2.0.a1
pyrus_communis	pycom09g17140
rosa_chinensis	RchiOBHm_Chr3g0490631
rosa_laevigata	RLG00000022878
rosa_multiflora	Rmu_sc0003456.1_g000006 Rmu_sc0012075.1_g000001
rosa_roxburghii	Rroxscaffold_6G00393350
rosa_rugosa	Rorug03G0244900 Rorug04G0070900
rosa_samantha	Rh3AG294200 Rh3BG330400 Rh3CG328000 Rh3DG327300
rosa_wichuraiana	Rw3G026020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	422
Acc36I	ACCTGC	1 cut(s)	422
AccBSI	CCGCTC	1 cut(s)	225
AccI	GTMKAC	1 cut(s)	156
AciI	CCGC	3 cut(s)	106, 112, 225
AclWI	GGATC	2 cut(s)	347, 374
AcvI	CACGTG	1 cut(s)	58
AfaI	GTAC	2 cut(s)	243, 309
AfiI	CCNNNNNNNGG	1 cut(s)	310
AgeI	ACCGGT	1 cut(s)	491
AgsI	TTSAA	1 cut(s)	478
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	5 cut(s)	37, 316, 332, 427, 439
AluI	AGCT	5 cut(s)	37, 316, 332, 427, 439
Alw21I	GWGCWC	1 cut(s)	413
AlwI	GGATC	2 cut(s)	347, 374
AoxI	GGCC	1 cut(s)	301
ApeKI	GCWGC	4 cut(s)	296, 329, 417, 436
AsiGI	ACCGGT	1 cut(s)	491
AspS9I	GGNCC	1 cut(s)	494
AsuHPI	GGTGA	2 cut(s)	298, 481
AsuII	TTCGAA	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	494
BbrPI	CACGTG	1 cut(s)	58
Bbv12I	GWGCWC	1 cut(s)	413
BbvI	GCAGC	4 cut(s)	308, 341, 404, 448
BccI	CCATC	3 cut(s)	173, 283, 412
BciT130I	CCWGG	1 cut(s)	326
BciVI	GTATCC	1 cut(s)	449
BfaI	CTAG	1 cut(s)	219
BfmI	CTRYAG	1 cut(s)	276
BfuAI	ACCTGC	1 cut(s)	422
BfuI	GTATCC	1 cut(s)	449
BisI	GCNGC	5 cut(s)	226, 297, 330, 418, 437
BlsI	GCNGC	5 cut(s)	227, 298, 331, 419, 438
Bme1390I	CCNGG	1 cut(s)	326
Bme18I	GGWCC	1 cut(s)	494
BmgT120I	GGNCC	1 cut(s)	494
BmiI	GGNNCC	1 cut(s)	496
BmrFI	CCNGG	1 cut(s)	326
Bpu14I	TTCGAA	1 cut(s)	398
BpuEI	CTTGAG	1 cut(s)	413
BsaAI	YACGTR	1 cut(s)	58
BsaWI	WCCGGW	3 cut(s)	310, 355, 491
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse118I	RCCGGY	1 cut(s)	491
Bse3DI	GCAATG	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	326
BseGI	GGATG	2 cut(s)	100, 165
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseMI	GCAATG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	161
BseXI	GCAGC	4 cut(s)	308, 341, 404, 448
BseYI	CCCAGC	1 cut(s)	469
BsgI	GTGCAG	1 cut(s)	380
BshFI	GGCC	1 cut(s)	303
BshTI	ACCGGT	1 cut(s)	491
BsiHKAI	GWGCWC	1 cut(s)	413
BsiSI	CCGG	3 cut(s)	311, 356, 492
BslFI	GGGAC	1 cut(s)	480
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmFI	GGGAC	1 cut(s)	480
BsmI	GAATGC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	303
Bsp119I	TTCGAA	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	413
Bsp143I	GATC	2 cut(s)	352, 379
BspACI	CCGC	3 cut(s)	106, 112, 225
BspANI	GGCC	1 cut(s)	303
BspHI	TCATGA	1 cut(s)	261
BspLI	GGNNCC	1 cut(s)	496
BspMI	ACCTGC	1 cut(s)	422
BspPI	GGATC	2 cut(s)	347, 374
BspT104I	TTCGAA	1 cut(s)	398
BsrBI	CCGCTC	1 cut(s)	225
BsrDI	GCAATG	1 cut(s)	189
BsrFI	RCCGGY	1 cut(s)	491
BssAI	RCCGGY	1 cut(s)	491
BssMI	GATC	2 cut(s)	352, 379
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	2 cut(s)	45, 524
BstAPI	GCANNNNNTGC	1 cut(s)	417
BstBAI	YACGTR	1 cut(s)	58
BstBI	TTCGAA	1 cut(s)	398
BstC8I	GCNNGC	2 cut(s)	301, 318
BstDEI	CTNAG	1 cut(s)	376
BstF5I	GGATG	2 cut(s)	100, 165
BstKTI	GATC	2 cut(s)	355, 382
BstMBI	GATC	2 cut(s)	352, 379
BstMWI	GCNNNNNNNGC	4 cut(s)	326, 335, 417, 433
BstNI	CCWGG	1 cut(s)	326
BstNSI	RCATGY	2 cut(s)	232, 351
BstSCI	CCNGG	1 cut(s)	324
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	4 cut(s)	308, 341, 404, 448
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BsuI	GTATCC	1 cut(s)	449
BsuRI	GGCC	1 cut(s)	303
BtsCI	GGATG	2 cut(s)	100, 165
BtsI	GCAGTG	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	154
BveI	ACCTGC	1 cut(s)	422
Cac8I	GCNNGC	2 cut(s)	301, 318
CciI	TCATGA	1 cut(s)	261
Cfr10I	RCCGGY	1 cut(s)	491
Cfr13I	GGNCC	1 cut(s)	494
Csp6I	GTAC	2 cut(s)	242, 308
CspAI	ACCGGT	1 cut(s)	491
CviAII	CATG	9 cut(s)	63, 71, 143, 229, 262, 348, 372, 392, 444
CviJI	RGCY	8 cut(s)	37, 303, 316, 332, 403, 427, 439, 473
CviKI_1	RGCY	8 cut(s)	37, 303, 316, 332, 403, 427, 439, 473
CviQI	GTAC	2 cut(s)	242, 308
DdeI	CTNAG	1 cut(s)	376
DpnI	GATC	2 cut(s)	354, 381
DpnII	GATC	2 cut(s)	352, 379
EciI	GGCGGA	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	494
Eco72I	CACGTG	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	324
FaeI	CATG	9 cut(s)	66, 74, 146, 232, 265, 351, 375, 395, 447
FaqI	GGGAC	1 cut(s)	480
FatI	CATG	9 cut(s)	62, 70, 142, 228, 261, 347, 371, 391, 443
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	5 cut(s)	226, 297, 330, 418, 437
FokI	GGATG	2 cut(s)	107, 152
Fsp4HI	GCNGC	5 cut(s)	226, 297, 330, 418, 437
FspBI	CTAG	1 cut(s)	219
GluI	GCNGC	5 cut(s)	226, 297, 330, 418, 437
GsaI	CCCAGC	1 cut(s)	473
HaeIII	GGCC	1 cut(s)	303
HapII	CCGG	3 cut(s)	311, 356, 492
Hin1II	CATG	9 cut(s)	66, 74, 146, 232, 265, 351, 375, 395, 447
HinfI	GANTC	4 cut(s)	52, 67, 78, 367
HpaII	CCGG	3 cut(s)	311, 356, 492
HphI	GGTGA	2 cut(s)	298, 481
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	1 cut(s)	132
Hpy188III	TCNNGA	2 cut(s)	262, 463
Hpy8I	GTNNAC	1 cut(s)	157
HpyAV	CCTTC	1 cut(s)	484
HpyCH4III	ACNGT	2 cut(s)	45, 524
HpyCH4IV	ACGT	2 cut(s)	57, 159
HpyCH4V	TGCA	3 cut(s)	187, 320, 361
HpyF10VI	GCNNNNNNNGC	4 cut(s)	326, 335, 417, 433
HpyF3I	CTNAG	1 cut(s)	376
HpySE526I	ACGT	2 cut(s)	57, 159
Hsp92II	CATG	9 cut(s)	66, 74, 146, 232, 265, 351, 375, 395, 447
Kzo9I	GATC	2 cut(s)	352, 379
LmnI	GCTCC	3 cut(s)	222, 313, 433
Lsp1109I	GCAGC	4 cut(s)	308, 341, 404, 448
MaeI	CTAG	1 cut(s)	219
MaeII	ACGT	2 cut(s)	57, 159
MaeIII	GTNAC	5 cut(s)	39, 53, 58, 160, 487
MalI	GATC	2 cut(s)	354, 381
MbiI	CCGCTC	1 cut(s)	225
MboI	GATC	2 cut(s)	352, 379
MboII	GAAGA	5 cut(s)	78, 208, 211, 214, 250
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	1 cut(s)	413
MluCI	AATT	1 cut(s)	18
MlyI	GAGTC	4 cut(s)	61, 61, 72, 376
MnlI	CCTC	5 cut(s)	68, 179, 182, 458, 549
MseI	TTAA	3 cut(s)	17, 125, 547
MslI	CAYNNNNRTG	2 cut(s)	147, 260
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	3 cut(s)	311, 356, 492
MspR9I	CCNGG	1 cut(s)	326
Mva1269I	GAATGC	1 cut(s)	114
MvaI	CCWGG	1 cut(s)	326
MwoI	GCNNNNNNNGC	4 cut(s)	326, 335, 417, 433
NdeII	GATC	2 cut(s)	352, 379
NlaIII	CATG	9 cut(s)	66, 74, 146, 232, 265, 351, 375, 395, 447
NlaIV	GGNNCC	1 cut(s)	496
NmeAIII	GCCGAG	1 cut(s)	329
NmuCI	GTSAC	3 cut(s)	53, 58, 487
NspI	RCATGY	2 cut(s)	232, 351
NspV	TTCGAA	1 cut(s)	398
PagI	TCATGA	1 cut(s)	261
PaqCI	CACCTGC	1 cut(s)	422
PcsI	WCGNNNNNNNCGW	1 cut(s)	404
PctI	GAATGC	1 cut(s)	114
PinAI	ACCGGT	1 cut(s)	491
PkrI	GCNGC	5 cut(s)	227, 298, 331, 419, 438
PleI	GAGTC	4 cut(s)	60, 61, 72, 375
PmaCI	CACGTG	1 cut(s)	58
PmlI	CACGTG	1 cut(s)	58
PpsI	GAGTC	4 cut(s)	60, 61, 72, 375
Ppu21I	YACGTR	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	324
PspCI	CACGTG	1 cut(s)	58
PspFI	CCCAGC	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	496
PspPI	GGNCC	1 cut(s)	494
PsuI	RGATCY	1 cut(s)	379
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	2 cut(s)	243, 309
RsaNI	GTAC	2 cut(s)	242, 308
RseI	CAYNNNNRTG	2 cut(s)	147, 260
SaqAI	TTAA	3 cut(s)	17, 125, 547
SatI	GCNGC	5 cut(s)	226, 297, 330, 418, 437
Sau3AI	GATC	2 cut(s)	352, 379
Sau96I	GGNCC	1 cut(s)	494
SchI	GAGTC	4 cut(s)	61, 61, 72, 376
ScrFI	CCNGG	1 cut(s)	326
SduI	GDGCHC	1 cut(s)	413
SetI	ASST	8 cut(s)	39, 60, 162, 318, 334, 416, 429, 441
SfcI	CTRYAG	1 cut(s)	276
SfuI	TTCGAA	1 cut(s)	398
SinI	GGWCC	1 cut(s)	494
SmiMI	CAYNNNNRTG	2 cut(s)	147, 260
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	1 cut(s)	18
SsiI	CCGC	3 cut(s)	106, 112, 225
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	324
TaaI	ACNGT	2 cut(s)	45, 524
TaiI	ACGT	2 cut(s)	60, 162
TaqI	TCGA	2 cut(s)	398, 407
TasI	AATT	1 cut(s)	18
TauI	GCSGC	1 cut(s)	228
Tru1I	TTAA	3 cut(s)	17, 125, 547
Tru9I	TTAA	3 cut(s)	17, 125, 547
TscAI	CASTG	1 cut(s)	154
TseFI	GTSAC	3 cut(s)	53, 58, 487
TseI	GCWGC	4 cut(s)	296, 329, 417, 436
Tsp45I	GTSAC	3 cut(s)	53, 58, 487
TspDTI	ATGAA	3 cut(s)	221, 241, 250
TspRI	CASTG	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	494
XceI	RCATGY	2 cut(s)	232, 351
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	156
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.