AT3G18280

Protease inhibitor seed storage lipid transfer protein (LTP) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007035
Physical Location & Seq
Forward (+)
6266946 .. 6267648
703 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18280.2

Sequence Viewer

Length: 291 bp
ATGGTGATGATCAAGACCACAATGGTTTCCCTTTTTGCTCTAGCGGCGGTTCTCCTAATGATTCTAGCCCCGGCGGCAGAAGCCGTGACGTGCTCGCCAATGCAGCTAAGCCCATGTGCAACGGCGATAACGTCGTCTTCTCCACCATCGGCTTTGTGCTGTGCAAAGCTGAAGGAGCAGAGGCCATGCTTATGTGGTTACATGAGAAACCCTAGCCTCCGTCGCTTCGTCAGCACTCCCAACGCTCGTAAAGTCTCTAAAAGTTGCAAACTCCCCATCCCAAGGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

96

Amino Acids

10.27

Weight (kDa)

9.69

Isoelectric Point (pI)

53.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 44, 47, 74
AcuI CTGAAG 1 cut(s) 191
AfiI CCNNNNNNNGG 1 cut(s) 282
AjiI CACGTC 1 cut(s) 90
AluBI AGCT 2 cut(s) 106, 169
AluI AGCT 2 cut(s) 106, 169
Alw21I GWGCWC 1 cut(s) 95
Alw26I GTCTC 1 cut(s) 259
AoxI GGCC 1 cut(s) 182
ApeKI GCWGC 1 cut(s) 103
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 95
BbvI GCAGC 1 cut(s) 115
BccI CCATC 2 cut(s) 154, 284
BceAI ACGGC 2 cut(s) 68, 138
BclI TGATCA 1 cut(s) 9
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 259
BfaI CTAG 3 cut(s) 41, 65, 213
BglI GCCNNNNNGGC 1 cut(s) 74
BisI GCNGC 3 cut(s) 45, 75, 104
BlpI GCTNAGC 1 cut(s) 107
BlsI GCNGC 3 cut(s) 46, 76, 105
Bme1390I CCNGG 1 cut(s) 71
BmgBI CACGTC 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 129
Bpu1102I GCTNAGC 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 71
BsaJI CCNNGG 2 cut(s) 69, 281
Bsc4I CCNNNNNNNGG 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 69, 281
BseGI GGATG 1 cut(s) 276
BseLI CCNNNNNNNGG 1 cut(s) 282
BseXI GCAGC 1 cut(s) 115
BshFI GGCC 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 95
BsiSI CCGG 1 cut(s) 71
BslI CCNNNNNNNGG 1 cut(s) 282
BsmAI GTCTC 1 cut(s) 259
BsnI GGCC 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 95
Bsp143I GATC 1 cut(s) 9
Bsp1720I GCTNAGC 1 cut(s) 107
BspACI CCGC 3 cut(s) 44, 47, 74
BspANI GGCC 1 cut(s) 184
BssECI CCNNGG 2 cut(s) 69, 281
BssMI GATC 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 281
BstC8I GCNNGC 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 107
BstF5I GGATG 1 cut(s) 276
BstKTI GATC 1 cut(s) 12
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 1 cut(s) 9
BstMWI GCNNNNNNNGC 7 cut(s) 44, 74, 80, 103, 175, 222, 231
BstSCI CCNGG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 115
BstV2I GAAGAC 1 cut(s) 129
BsuRI GGCC 1 cut(s) 184
BtrI CACGTC 1 cut(s) 90
BtsCI GGATG 1 cut(s) 276
Cac8I GCNNGC 1 cut(s) 95
CviAII CATG 3 cut(s) 114, 186, 202
CviJI RGCY 8 cut(s) 68, 83, 106, 111, 152, 169, 184, 216
CviKI_1 RGCY 8 cut(s) 68, 83, 106, 111, 152, 169, 184, 216
DdeI CTNAG 1 cut(s) 107
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 281
Eco57I CTGAAG 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 281
ErhI CCWWGG 1 cut(s) 281
FaeI CATG 3 cut(s) 117, 189, 205
FaiI YATR 4 cut(s) 115, 187, 193, 203
FatI CATG 3 cut(s) 113, 185, 201
FbaI TGATCA 1 cut(s) 9
Fnu4HI GCNGC 3 cut(s) 45, 75, 104
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 3 cut(s) 45, 75, 104
FspBI CTAG 3 cut(s) 41, 65, 213
GluI GCNGC 3 cut(s) 45, 75, 104
HaeIII GGCC 1 cut(s) 184
HapII CCGG 1 cut(s) 71
Hin1II CATG 3 cut(s) 117, 189, 205
HinfI GANTC 1 cut(s) 61
HpaII CCGG 1 cut(s) 71
HphI GGTGA 1 cut(s) 16
Hpy188III TCNNGA 1 cut(s) 13
Hpy99I CGWCG 2 cut(s) 136, 225
HpyAV CCTTC 1 cut(s) 166
HpyCH4IV ACGT 2 cut(s) 89, 131
HpyCH4V TGCA 4 cut(s) 103, 119, 164, 267
HpyF10VI GCNNNNNNNGC 7 cut(s) 44, 74, 80, 103, 175, 222, 231
HpyF3I CTNAG 1 cut(s) 107
HpySE526I ACGT 2 cut(s) 89, 131
Hsp92II CATG 3 cut(s) 117, 189, 205
Ksp22I TGATCA 1 cut(s) 9
Kzo9I GATC 1 cut(s) 9
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 1 cut(s) 84
Lsp1109I GCAGC 1 cut(s) 115
MaeI CTAG 3 cut(s) 41, 65, 213
MaeII ACGT 2 cut(s) 89, 131
MaeIII GTNAC 2 cut(s) 85, 197
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 1 cut(s) 129
MhlI GDGCHC 1 cut(s) 95
MnlI CCTC 2 cut(s) 174, 227
MseI TTAA 1 cut(s) 289
MslI CAYNNNNRTG 1 cut(s) 190
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 71
MwoI GCNNNNNNNGC 7 cut(s) 44, 74, 80, 103, 175, 222, 231
NciI CCSGG 1 cut(s) 71
NdeII GATC 1 cut(s) 9
NlaIII CATG 3 cut(s) 117, 189, 205
NmuCI GTSAC 1 cut(s) 85
PcsI WCGNNNNNNNCGW 1 cut(s) 128
PfeI GAWTC 1 cut(s) 61
PkrI GCNGC 3 cut(s) 46, 76, 105
RseI CAYNNNNRTG 1 cut(s) 190
SaqAI TTAA 1 cut(s) 289
SatI GCNGC 3 cut(s) 45, 75, 104
Sau3AI GATC 1 cut(s) 9
ScrFI CCNGG 1 cut(s) 71
SduI GDGCHC 1 cut(s) 95
SetI ASST 5 cut(s) 92, 108, 134, 171, 287
SmiMI CAYNNNNRTG 1 cut(s) 190
SsiI CCGC 3 cut(s) 44, 47, 74
SspMI CTAG 3 cut(s) 41, 65, 213
StyD4I CCNGG 1 cut(s) 69
StyI CCWWGG 1 cut(s) 281
TaiI ACGT 2 cut(s) 92, 134
TauI GCSGC 2 cut(s) 47, 77
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 1 cut(s) 289
Tru9I TTAA 1 cut(s) 289
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 85
TspGWI ACGGA 1 cut(s) 209
XspI CTAG 3 cut(s) 41, 65, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.