Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007035

Physical Location & Seq

Genomic Coordinates Forward (+)

22886385 .. 22887869

Gene Structure 1485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0244900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGATGGACTGGGCCTTCTCTCAAGTCGCATTATCTGCAGGCATACCGGCCCATTGCACAAGCCATTGTGTGAATTCTGATAGGTTTACCTCGTTTCTGAATGATGGCCATGATGCAGTTGGAGTTAATGTTGTATCGTGTGGTTGTGCCATTCGCCGCATTCACCAATTACCATGTGCACATGACATTGCTGAATATCGAAATTCCCATCAGCCTATCCCAATTGATGCTATCCATTCTCATTGGAGACGGTCAAGTGTAGAACAAGATGATGAAACCAAGAGACAAGTTTTGCTGAAGATTGATGAGCTTATAAATCCAAGTTGCACAATGCTTCAAGAACCAAATGAGAAGATTAAAACCAAAGGGCGTCCTTCTAAGATTGACAGTAGTACTCATCGTCTACCATCTACTTTTGAGATTGCCGAGGCTTTTTCCGACATGGTAGTCAGTCACAAGTACCACCTGAAAAGAGTTGTAGCATCGGCTATGGGATTTGGTAGGCGTTTTTGGCGAAGAGTTCGAATAGACCTAATGAATGAGCTAAAAAAACACATTACTGGGCGATTTCAGAACCAAGAACTGCCTGAAATTGGAATTGGTTTTGTTAACGGAGACCACTTTGTGCAGGTGTCTTTGTCAGCAGGATGCCCATTACCACCAATCCCACCAAATTGGTACCCCCATGCTGATGATAAAGCAAGATCATTATACAATAGATACAAGGATCGTTTGCATCAATATACCCAAATACCCCATCCAGAAAGAGTTACTGCTATTTCCGAAATTATAACTCTTGAGACTGATGAGAATATGTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

274

Amino Acids

31.32

Weight (kDa)

6.97

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48750 AT3G18280 AT3G18280 AT5G38160 AT5G38170
fragaria_vesca	FvH4_1g30410 FvH4_1g30410
malus_domestica	MD09G1255700.v1.1 MD09G1255800.v1.1 MD17G1248900.v1.1
prunus_persica	Prupe.3G147800_v2.0.a1 Prupe.3G147900_v2.0.a1
pyrus_communis	pycom09g17140
rosa_chinensis	RchiOBHm_Chr3g0490631
rosa_laevigata	RLG00000022878
rosa_multiflora	Rmu_sc0003456.1_g000006 Rmu_sc0012075.1_g000001
rosa_roxburghii	Rroxscaffold_6G00393350
rosa_rugosa	Rorug03G0244900 Rorug04G0070900
rosa_samantha	Rh3AG294200 Rh3BG330400 Rh3CG328000 Rh3DG327300
rosa_wichuraiana	Rw3G026020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	314, 791
AarI	CACCTGC	1 cut(s)	619
AasI	GACNNNNNNGTC	1 cut(s)	446
Acc36I	ACCTGC	1 cut(s)	619
Acc65I	GGTACC	1 cut(s)	678
AccB1I	GGYRCC	1 cut(s)	678
AccI	GTMKAC	1 cut(s)	403
AciI	CCGC	1 cut(s)	157
AclWI	GGATC	1 cut(s)	735
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	2 cut(s)	73, 202
AcuI	CTGAAG	1 cut(s)	317
AcyI	GRCGYC	1 cut(s)	370
AdeI	CACNNNGTG	1 cut(s)	625
AfaI	GTAC	3 cut(s)	394, 461, 680
AfiI	CCNNNNNNNGG	1 cut(s)	593
AgsI	TTSAA	2 cut(s)	338, 821
AjuI	GAANNNNNNNTTGG	2 cut(s)	582, 614
AluBI	AGCT	2 cut(s)	310, 544
AluI	AGCT	2 cut(s)	310, 544
Alw21I	GWGCWC	1 cut(s)	181
Alw26I	GTCTC	4 cut(s)	241, 277, 609, 794
Alw44I	GTGCAC	1 cut(s)	177
AlwI	GGATC	1 cut(s)	735
AoxI	GGCC	3 cut(s)	12, 48, 106
ApaLI	GTGCAC	1 cut(s)	177
ApoI	RAATTY	2 cut(s)	73, 202
Asp718I	GGTACC	1 cut(s)	678
AspS9I	GGNCC	2 cut(s)	12, 49
AsuHPI	GGTGA	1 cut(s)	155
AsuII	TTCGAA	1 cut(s)	523
BaeGI	GKGCMC	1 cut(s)	181
BalI	TGGCCA	1 cut(s)	108
BanI	GGYRCC	1 cut(s)	678
Bbv12I	GWGCWC	1 cut(s)	181
BccI	CCATC	4 cut(s)	98, 216, 415, 765
BcoDI	GTCTC	4 cut(s)	241, 277, 609, 794
BfmI	CTRYAG	1 cut(s)	36
BfuAI	ACCTGC	1 cut(s)	619
BisI	GCNGC	1 cut(s)	157
BlsI	GCNGC	1 cut(s)	158
BmcAI	AGTACT	1 cut(s)	394
BmgT120I	GGNCC	2 cut(s)	12, 49
BmiI	GGNNCC	1 cut(s)	680
BmrI	ACTGGG	2 cut(s)	19, 570
BmsI	GCATC	5 cut(s)	103, 217, 491, 638, 745
BmuI	ACTGGG	2 cut(s)	19, 570
Bpu14I	TTCGAA	1 cut(s)	523
BpuEI	CTTGAG	2 cut(s)	6, 818
BsaHI	GRCGYC	1 cut(s)	370
BsaI	GGTCTC	1 cut(s)	609
BsaJI	CCNNGG	1 cut(s)	426
BsaXI	ACNNNNNCTCC	2 cut(s)	114, 144
Bsc4I	CCNNNNNNNGG	1 cut(s)	593
Bse118I	RCCGGY	1 cut(s)	46
Bse1I	ACTGG	2 cut(s)	14, 565
Bse3DI	GCAATG	2 cut(s)	52, 186
BseDI	CCNNGG	1 cut(s)	426
BseGI	GGATG	2 cut(s)	653, 757
BseLI	CCNNNNNNNGG	1 cut(s)	593
BseMI	GCAATG	2 cut(s)	52, 186
BseNI	ACTGG	2 cut(s)	14, 565
BseSI	GKGCMC	1 cut(s)	181
BsgI	GTGCAG	1 cut(s)	647
BshFI	GGCC	3 cut(s)	14, 50, 108
BshNI	GGYRCC	1 cut(s)	678
BsiHKAI	GWGCWC	1 cut(s)	181
BsiSI	CCGG	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	593
BsmAI	GTCTC	4 cut(s)	241, 277, 609, 794
BsmBI	CGTCTC	1 cut(s)	241
BsmI	GAATGC	1 cut(s)	159
BsnI	GGCC	3 cut(s)	14, 50, 108
Bso31I	GGTCTC	1 cut(s)	609
Bsp119I	TTCGAA	1 cut(s)	523
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	2 cut(s)	704, 727
BspACI	CCGC	1 cut(s)	157
BspANI	GGCC	3 cut(s)	14, 50, 108
BspLI	GGNNCC	1 cut(s)	680
BspMAI	CTGCAG	1 cut(s)	40
BspMI	ACCTGC	1 cut(s)	619
BspPI	GGATC	1 cut(s)	735
BspT104I	TTCGAA	1 cut(s)	523
BspT107I	GGYRCC	1 cut(s)	678
BspTNI	GGTCTC	1 cut(s)	609
BsrDI	GCAATG	2 cut(s)	52, 186
BsrFI	RCCGGY	1 cut(s)	46
BsrI	ACTGG	2 cut(s)	14, 565
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	2 cut(s)	704, 727
BssNI	GRCGYC	1 cut(s)	370
Bst4CI	ACNGT	2 cut(s)	252, 389
Bst6I	CTCTTC	1 cut(s)	511
BstACI	GRCGYC	1 cut(s)	370
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstBI	TTCGAA	1 cut(s)	523
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	1 cut(s)	378
BstF5I	GGATG	2 cut(s)	653, 757
BstKTI	GATC	2 cut(s)	707, 730
BstMAI	GTCTC	4 cut(s)	241, 277, 609, 794
BstMBI	GATC	2 cut(s)	704, 727
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 511
BstSFI	CTRYAG	1 cut(s)	36
BstSLI	GKGCMC	1 cut(s)	181
BstXI	CCANNNNNNTGG	1 cut(s)	675
BsuRI	GGCC	3 cut(s)	14, 50, 108
BtsCI	GGATG	2 cut(s)	653, 757
BveI	ACCTGC	1 cut(s)	619
Cac8I	GCNNGC	1 cut(s)	40
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	2 cut(s)	12, 49
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	3 cut(s)	393, 460, 679
CviAII	CATG	5 cut(s)	110, 174, 182, 442, 686
CviJI	RGCY	9 cut(s)	14, 50, 63, 108, 214, 310, 431, 488, 544
CviKI_1	RGCY	9 cut(s)	14, 50, 63, 108, 214, 310, 431, 488, 544
CviQI	GTAC	3 cut(s)	393, 460, 679
DdeI	CTNAG	1 cut(s)	378
DpnI	GATC	2 cut(s)	706, 729
DpnII	GATC	2 cut(s)	704, 727
DraIII	CACNNNGTG	1 cut(s)	625
DrdI	GACNNNNNNGTC	1 cut(s)	446
DseDI	GACNNNNNNGTC	1 cut(s)	446
EaeI	YGGCCR	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	511
EarI	CTCTTC	1 cut(s)	511
Eco31I	GGTCTC	1 cut(s)	609
Eco57I	CTGAAG	1 cut(s)	317
EcoRI	GAATTC	1 cut(s)	73
Esp3I	CGTCTC	1 cut(s)	241
FaeI	CATG	5 cut(s)	113, 177, 185, 445, 689
FatI	CATG	5 cut(s)	109, 173, 181, 441, 685
FblI	GTMKAC	1 cut(s)	403
Fnu4HI	GCNGC	1 cut(s)	157
FokI	GGATG	2 cut(s)	660, 744
Fsp4HI	GCNGC	1 cut(s)	157
GluI	GCNGC	1 cut(s)	157
HaeIII	GGCC	3 cut(s)	14, 50, 108
HapII	CCGG	1 cut(s)	47
HgaI	GACGC	1 cut(s)	359
Hin1I	GRCGYC	1 cut(s)	370
Hin1II	CATG	5 cut(s)	113, 177, 185, 445, 689
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HpaI	GTTAAC	1 cut(s)	610
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	4 cut(s)	87, 179, 404, 610
Hpy188I	TCNGA	5 cut(s)	79, 99, 439, 573, 784
Hpy188III	TCNNGA	3 cut(s)	338, 761, 797
Hpy8I	GTNNAC	4 cut(s)	87, 179, 404, 610
HpyAV	CCTTC	2 cut(s)	25, 384
HpyCH4III	ACNGT	2 cut(s)	252, 389
HpyCH4V	TGCA	7 cut(s)	38, 57, 116, 179, 327, 628, 736
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 511
HpyF3I	CTNAG	1 cut(s)	378
Hsp92I	GRCGYC	1 cut(s)	370
Hsp92II	CATG	5 cut(s)	113, 177, 185, 445, 689
KpnI	GGTACC	1 cut(s)	682
KspAI	GTTAAC	1 cut(s)	610
Kzo9I	GATC	2 cut(s)	704, 727
LpnPI	CCDG	8 cut(s)	24, 60, 479, 546, 600, 614, 630, 774
LweI	GCATC	5 cut(s)	103, 217, 491, 638, 745
MaeIII	GTNAC	2 cut(s)	452, 769
MalI	GATC	2 cut(s)	706, 729
MboI	GATC	2 cut(s)	704, 727
MboII	GAAGA	3 cut(s)	310, 364, 528
MfeI	CAATTG	1 cut(s)	222
MhlI	GDGCHC	1 cut(s)	181
MlsI	TGGCCA	1 cut(s)	108
MluCI	AATT	8 cut(s)	73, 167, 202, 222, 591, 597, 673, 786
MluNI	TGGCCA	1 cut(s)	108
MmeI	TCCRAC	2 cut(s)	100, 462
MnlI	CCTC	2 cut(s)	100, 421
Mox20I	TGGCCA	1 cut(s)	108
MscI	TGGCCA	1 cut(s)	108
MseI	TTAA	3 cut(s)	126, 357, 609
MslI	CAYNNNNRTG	1 cut(s)	690
Msp20I	TGGCCA	1 cut(s)	108
MspI	CCGG	1 cut(s)	47
MunI	CAATTG	1 cut(s)	222
Mva1269I	GAATGC	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	35, 511
NdeII	GATC	2 cut(s)	704, 727
NlaIII	CATG	5 cut(s)	113, 177, 185, 445, 689
NlaIV	GGNNCC	1 cut(s)	680
NmeAIII	GCCGAG	1 cut(s)	451
NmuCI	GTSAC	1 cut(s)	452
NspV	TTCGAA	1 cut(s)	523
PaqCI	CACCTGC	1 cut(s)	619
PctI	GAATGC	1 cut(s)	159
PkrI	GCNGC	1 cut(s)	158
PsiI	TTATAA	2 cut(s)	314, 791
PspN4I	GGNNCC	1 cut(s)	680
PspPI	GGNCC	2 cut(s)	12, 49
PstI	CTGCAG	1 cut(s)	40
RsaI	GTAC	3 cut(s)	394, 461, 680
RsaNI	GTAC	3 cut(s)	393, 460, 679
RseI	CAYNNNNRTG	1 cut(s)	690
SaqAI	TTAA	3 cut(s)	126, 357, 609
SatI	GCNGC	1 cut(s)	157
Sau3AI	GATC	2 cut(s)	704, 727
Sau96I	GGNCC	2 cut(s)	12, 49
ScaI	AGTACT	1 cut(s)	394
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	7 cut(s)	86, 92, 312, 468, 534, 546, 633
SfaNI	GCATC	5 cut(s)	103, 217, 491, 638, 745
SfcI	CTRYAG	1 cut(s)	36
SfuI	TTCGAA	1 cut(s)	523
SmiMI	CAYNNNNRTG	1 cut(s)	690
SmlI	CTYRAG	2 cut(s)	21, 797
SmoI	CTYRAG	2 cut(s)	21, 797
Sse9I	AATT	8 cut(s)	73, 167, 202, 222, 591, 597, 673, 786
SsiI	CCGC	1 cut(s)	157
TaaI	ACNGT	2 cut(s)	252, 389
TaqI	TCGA	2 cut(s)	199, 523
TasI	AATT	8 cut(s)	73, 167, 202, 222, 591, 597, 673, 786
TatI	WGTACW	1 cut(s)	392
TauI	GCSGC	1 cut(s)	159
Tru1I	TTAA	3 cut(s)	126, 357, 609
Tru9I	TTAA	3 cut(s)	126, 357, 609
TseFI	GTSAC	1 cut(s)	452
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	2 cut(s)	288, 551
TspGWI	ACGGA	1 cut(s)	627
VneI	GTGCAC	1 cut(s)	177
XapI	RAATTY	2 cut(s)	73, 202
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XmiI	GTMKAC	1 cut(s)	403
ZrmI	AGTACT	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.