AT1G48780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010835
Physical Location & Seq
Forward (+)
18041380 .. 18042886
1507 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G48780.2

Sequence Viewer

Length: 756 bp
ATGATATGCACAGAGGCTCTTCAGCGGATTTCGTTCTCGAGTGATCTTGGTCAATCGGATAAAGCACCACCACCTGTGATAGAGCCATCAGGCCTTATCCGAAGAGACGAAACTCTTCTTGATTCATCAAACTCGGACTTCGAGTTCCATATCTCAAACAGCTTTGATCCAGGAGACTCCTCACCAGCGGATGAGATCTTTGCAGACGGTATGATCCTTCCTTTCCATGTAACTGCAGCTTCGACCGTGCCAAAACGTCTCTACAAGTACGAACTCCCTCCCATTACATCCTCCCTTTCTCCATCTCCTCTCTCGCCACAACCGTTACCCACAAAACACAGCGAAAAGGAAACCAACGGGAGAGCAAGTGGAGCAAACTCTGACTCAGAAGCAGAGAAGTCATCAAAGTCGTTTTGGAGTTTCAAGAGAAGCTCCAGCCTCAACTGCGACATAAAGAAGAGTCTCATCTGTTCGTTTCCTCGGCTGACAAGAAGCAACTCTACAGGTTCGGTTACTAATTCTAAGAGAGCAATGCTGAGAGATGTTAACAACCATAGGCCCTCTTCTCGGTCCTCTTGCTGCAATGCGTATCAGTTCAGACCTCAAAAGCACACAGGAAAGAAAGGTGAAGGAGGAGGAAGCTTCTCCGTCATTCCAGTCCTCAATGGTCCATCTACATTTGGGTTAGGATCGATCTTACGCCATTCGAATTCGAAAGATAAGACGAAGACAAAGAAGAAGAAGAACAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

251

Amino Acids

27.37

Weight (kDa)

9.64

Isoelectric Point (pI)

66.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010835)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48780 AT1G48780 AT3G18300 AT3G18300
fragaria_vesca FvH4_5g11870
malus_domestica MD06G1217800.v1.1 MD14G1228000.v1.1
prunus_persica Prupe.5G223000_v2.0.a1
pyrus_communis pycom06g19400 pycom14g18940
rosa_chinensis RchiOBHm_Chr7g0185721
rosa_laevigata RLG00000004889
rosa_multiflora Rmu_sc0002952.1_g000001
rosa_roxburghii Rroxscaffold_3G00268680
rosa_rugosa Rorug06G0470800
rosa_samantha Rh7AG071700 Rh7BG076300 Rh7CG076500 Rh7DG076300
rosa_wichuraiana Rw7G006350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 25, 188
AclWI GGATC 3 cut(s) 161, 208, 697
AcsI RAATTY 1 cut(s) 709
AcuI CTGAAG 1 cut(s) 5
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 1 cut(s) 567
AgsI TTSAA 1 cut(s) 424
AjnI CCWGG 1 cut(s) 169
AloI GAACNNNNNNTCC 2 cut(s) 128, 160
AluBI AGCT 4 cut(s) 162, 239, 432, 642
AluI AGCT 4 cut(s) 162, 239, 432, 642
Alw26I GTCTC 4 cut(s) 99, 168, 263, 467
AlwI GGATC 3 cut(s) 161, 208, 697
Ama87I CYCGRG 1 cut(s) 37
AoxI GGCC 2 cut(s) 91, 557
ApeKI GCWGC 2 cut(s) 236, 579
ApoI RAATTY 1 cut(s) 709
Asp700I GAANNNNTTC 1 cut(s) 114
AspS9I GGNCC 3 cut(s) 558, 570, 668
AsuHPI GGTGA 2 cut(s) 174, 638
AsuII TTCGAA 2 cut(s) 707, 713
AvaI CYCGRG 1 cut(s) 37
AvaII GGWCC 2 cut(s) 570, 668
BarI GAAGNNNNNNTAC 2 cut(s) 484, 516
BbsI GAAGAC 1 cut(s) 734
BbvI GCAGC 2 cut(s) 248, 566
BccI CCATC 3 cut(s) 94, 310, 679
BciT130I CCWGG 1 cut(s) 171
BcoDI GTCTC 4 cut(s) 99, 168, 263, 467
BfmI CTRYAG 2 cut(s) 234, 501
BglII AGATCT 1 cut(s) 195
BisI GCNGC 2 cut(s) 237, 580
BlsI GCNGC 2 cut(s) 238, 581
Bme1390I CCNGG 1 cut(s) 171
Bme18I GGWCC 2 cut(s) 570, 668
BmeT110I CYCGRG 1 cut(s) 37
BmgT120I GGNCC 3 cut(s) 558, 570, 668
BmrFI CCNGG 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 734
BpmI CTGGAG 1 cut(s) 418
Bpu14I TTCGAA 2 cut(s) 707, 713
Bsa29I ATCGAT 1 cut(s) 692
BsaJI CCNNGG 1 cut(s) 479
BsaXI ACNNNNNCTCC 2 cut(s) 352, 382
Bsc4I CCNNNNNNNGG 1 cut(s) 567
Bse1I ACTGG 1 cut(s) 656
Bse3DI GCAATG 2 cut(s) 537, 589
BseBI CCWGG 1 cut(s) 171
BseCI ATCGAT 1 cut(s) 692
BseDI CCNNGG 1 cut(s) 479
BseGI GGATG 2 cut(s) 196, 287
BseLI CCNNNNNNNGG 1 cut(s) 567
BseMI GCAATG 2 cut(s) 537, 589
BseMII CTCAG 2 cut(s) 399, 527
BseNI ACTGG 1 cut(s) 656
BseRI GAGGAG 3 cut(s) 169, 297, 648
BseXI GCAGC 2 cut(s) 248, 566
Bsh1285I CGRYCG 1 cut(s) 246
BshFI GGCC 2 cut(s) 93, 559
BshVI ATCGAT 1 cut(s) 692
BsiEI CGRYCG 1 cut(s) 246
BsiHKCI CYCGRG 1 cut(s) 37
BslI CCNNNNNNNGG 1 cut(s) 567
BsmAI GTCTC 4 cut(s) 99, 168, 263, 467
BsmBI CGTCTC 2 cut(s) 99, 263
BsnI GGCC 2 cut(s) 93, 559
BsoBI CYCGRG 1 cut(s) 37
Bsp119I TTCGAA 2 cut(s) 707, 713
Bsp143I GATC 6 cut(s) 43, 166, 195, 213, 689, 693
BspACI CCGC 2 cut(s) 25, 188
BspANI GGCC 2 cut(s) 93, 559
BspCNI CTCAG 2 cut(s) 398, 528
BspDI ATCGAT 1 cut(s) 692
BspMAI CTGCAG 1 cut(s) 238
BspPI GGATC 3 cut(s) 161, 208, 697
BspQI GCTCTTC 1 cut(s) 24
BspT104I TTCGAA 2 cut(s) 707, 713
BsrDI GCAATG 2 cut(s) 537, 589
BsrI ACTGG 1 cut(s) 656
BssECI CCNNGG 1 cut(s) 479
BssMI GATC 6 cut(s) 43, 166, 195, 213, 689, 693
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 3 cut(s) 209, 247, 324
Bst6I CTCTTC 5 cut(s) 24, 97, 120, 452, 568
BstBI TTCGAA 2 cut(s) 707, 713
BstDEI CTNAG 3 cut(s) 385, 522, 536
BstF5I GGATG 2 cut(s) 196, 287
BstKTI GATC 6 cut(s) 46, 169, 198, 216, 692, 696
BstMAI GTCTC 4 cut(s) 99, 168, 263, 467
BstMBI GATC 6 cut(s) 43, 166, 195, 213, 689, 693
BstMCI CGRYCG 1 cut(s) 246
BstMWI GCNNNNNNNGC 2 cut(s) 371, 444
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
BstSFI CTRYAG 2 cut(s) 234, 501
BstV1I GCAGC 2 cut(s) 248, 566
BstV2I GAAGAC 1 cut(s) 734
BstX2I RGATCY 1 cut(s) 195
BstYI RGATCY 1 cut(s) 195
Bsu15I ATCGAT 1 cut(s) 692
BsuRI GGCC 2 cut(s) 93, 559
BsuTUI ATCGAT 1 cut(s) 692
BtsCI GGATG 2 cut(s) 196, 287
Cfr13I GGNCC 3 cut(s) 558, 570, 668
ClaI ATCGAT 1 cut(s) 692
Csp6I GTAC 1 cut(s) 268
CviAII CATG 1 cut(s) 227
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 3 cut(s) 385, 522, 536
DpnI GATC 6 cut(s) 45, 168, 197, 215, 691, 695
DpnII GATC 6 cut(s) 43, 166, 195, 213, 689, 693
Eam1104I CTCTTC 5 cut(s) 24, 97, 120, 452, 568
EarI CTCTTC 5 cut(s) 24, 97, 120, 452, 568
Eco147I AGGCCT 1 cut(s) 93
Eco47I GGWCC 2 cut(s) 570, 668
Eco57I CTGAAG 1 cut(s) 5
Eco88I CYCGRG 1 cut(s) 37
EcoO109I RGGNCCY 1 cut(s) 558
EcoRI GAATTC 1 cut(s) 709
EcoRII CCWGG 1 cut(s) 169
Esp3I CGTCTC 2 cut(s) 99, 263
FaeI CATG 1 cut(s) 230
FaiI YATR 6 cut(s) 7, 150, 212, 228, 452, 555
FatI CATG 1 cut(s) 226
Fnu4HI GCNGC 2 cut(s) 237, 580
FokI GGATG 2 cut(s) 203, 274
Fsp4HI GCNGC 2 cut(s) 237, 580
GluI GCNGC 2 cut(s) 237, 580
GsuI CTGGAG 1 cut(s) 418
HaeIII GGCC 2 cut(s) 93, 559
Hin1II CATG 1 cut(s) 230
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HindIII AAGCTT 1 cut(s) 640
HinfI GANTC 4 cut(s) 122, 176, 383, 460
HpaI GTTAAC 1 cut(s) 547
HphI GGTGA 2 cut(s) 174, 638
Hpy166II GTNNAC 1 cut(s) 547
Hpy188I TCNGA 6 cut(s) 58, 101, 136, 382, 388, 599
Hpy188III TCNNGA 3 cut(s) 37, 119, 424
Hpy8I GTNNAC 1 cut(s) 547
HpyAV CCTTC 2 cut(s) 227, 623
HpyCH4III ACNGT 3 cut(s) 209, 247, 324
HpyCH4IV ACGT 1 cut(s) 256
HpyCH4V TGCA 4 cut(s) 9, 203, 236, 582
HpyF10VI GCNNNNNNNGC 2 cut(s) 371, 444
HpyF3I CTNAG 3 cut(s) 385, 522, 536
HpySE526I ACGT 1 cut(s) 256
Hsp92II CATG 1 cut(s) 230
KspAI GTTAAC 1 cut(s) 547
Kzo9I GATC 6 cut(s) 43, 166, 195, 213, 689, 693
LguI GCTCTTC 1 cut(s) 24
LmnI GCTCC 2 cut(s) 371, 437
LpnPI CCDG 9 cut(s) 75, 87, 156, 183, 198, 448, 489, 600, 669
Lsp1109I GCAGC 2 cut(s) 248, 566
MaeII ACGT 1 cut(s) 256
MaeIII GTNAC 3 cut(s) 229, 324, 511
MalI GATC 6 cut(s) 45, 168, 197, 215, 691, 695
MboI GATC 6 cut(s) 43, 166, 195, 213, 689, 693
MboII GAAGA 9 cut(s) 11, 107, 114, 469, 555, 739, 748, 751, 754
MflI RGATCY 1 cut(s) 195
MluCI AATT 2 cut(s) 517, 709
MlyI GAGTC 3 cut(s) 170, 377, 469
MroXI GAANNNNTTC 1 cut(s) 114
MseI TTAA 1 cut(s) 546
MspA1I CMGCKG 2 cut(s) 25, 188
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 2 cut(s) 371, 444
NdeII GATC 6 cut(s) 43, 166, 195, 213, 689, 693
NlaIII CATG 1 cut(s) 230
NmeAIII GCCGAG 1 cut(s) 460
NspV TTCGAA 2 cut(s) 707, 713
PaeR7I CTCGAG 1 cut(s) 37
PceI AGGCCT 1 cut(s) 93
PciSI GCTCTTC 1 cut(s) 24
PcsI WCGNNNNNNNCGW 1 cut(s) 320
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 1 cut(s) 122
PfoI TCCNGGA 1 cut(s) 169
PkrI GCNGC 2 cut(s) 238, 581
PleI GAGTC 3 cut(s) 170, 377, 468
PpsI GAGTC 3 cut(s) 170, 377, 468
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspPI GGNCC 3 cut(s) 558, 570, 668
PstI CTGCAG 1 cut(s) 238
PsuI RGATCY 1 cut(s) 195
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
SapI GCTCTTC 1 cut(s) 24
SaqAI TTAA 1 cut(s) 546
SatI GCNGC 2 cut(s) 237, 580
Sau3AI GATC 6 cut(s) 43, 166, 195, 213, 689, 693
Sau96I GGNCC 3 cut(s) 558, 570, 668
SchI GAGTC 3 cut(s) 170, 377, 469
ScrFI CCNGG 1 cut(s) 171
SetI ASST 9 cut(s) 76, 164, 241, 259, 434, 508, 604, 628, 644
SfcI CTRYAG 2 cut(s) 234, 501
Sfr274I CTCGAG 1 cut(s) 37
SfuI TTCGAA 2 cut(s) 707, 713
SinI GGWCC 2 cut(s) 570, 668
SlaI CTCGAG 1 cut(s) 37
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
Sse9I AATT 2 cut(s) 517, 709
SseBI AGGCCT 1 cut(s) 93
SsiI CCGC 2 cut(s) 25, 188
StuI AGGCCT 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 169
TaaI ACNGT 3 cut(s) 209, 247, 324
TaiI ACGT 1 cut(s) 259
TaqI TCGA 6 cut(s) 38, 141, 242, 692, 707, 713
TaqII GACCGA 1 cut(s) 558
TasI AATT 2 cut(s) 517, 709
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 1 cut(s) 546
Tru9I TTAA 1 cut(s) 546
TseI GCWGC 2 cut(s) 236, 579
TspDTI ATGAA 1 cut(s) 114
TspGWI ACGGA 1 cut(s) 637
VpaK11BI GGWCC 2 cut(s) 570, 668
XapI RAATTY 1 cut(s) 709
XhoI CTCGAG 1 cut(s) 37
XmnI GAANNNNTTC 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.