Rroxscaffold_3G00268680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0010835
Physical Location & Seq
Reverse (-)
61755190 .. 61756980
1791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00268680.1

Sequence Viewer

Length: 783 bp
ATGATGTGTTCGGAGACTAGTCCTCCTCGAATATCATTTTCTCATGATCTTGGCCAAGCAGATATGATACCCAGGAGGGATTCCTCGCTCCTGGACTTGAATGGTGATTTTGAGTTCAGCATTAGCAGAAGCTTCAGGCAAGATGAGCCTTCTTCAGCAGATGAGCTTTTCTCCCATGGAGTCATCAAACCTATGCAACCCAGAGACAGATCATCAGTTGAGGATGCACCAAAAGCCAGACACCTTTATTCTCTTCCTCCTCTTCAAGGTCAGAATCCAAAGAAAAAGACCACCAGCAAGGACAACAATGATAATTCACAGTTCATGGATGTGAATAGTCCTGAGGATTTGGACCAGCAAAACACAAAGCCTCAGTCCAAGTCCTTCTGGGGGTTCAAGAGAAGCAGCAGCCTTAATCAAGAGAACAGGAAGAGTCTACTCTGCTCGTTACCAGAGTTTTTGAGAAGAAGCAATTCAACAGGGTCTGCCCCAAACCCAAAGAGGTCAACAATATACAAGGATGCTCATGCTCAACAGAAAAGGCAGTCCTCATCATCAGGTTTTATGTCAAAGTCATCATCATCATCCTCATCTTCATCTTCAAATCAATACCGAATGCTACCGAGGCCGCCATCAAAGAAGGGTCATGGAGGAGCATCAAACTACGGCAATGGCGTTGTGTTAAATGTACCATCACCTCACATTTCTAGAGGAACTGCAAAGCTCTTTTGTTTGAGTTCTTTTCTATACCCTGAAGGAAAGGAGAAGAAGCAAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

260

Amino Acids

28.93

Weight (kDa)

9.79

Isoelectric Point (pI)

67.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010835)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48780 AT1G48780 AT3G18300 AT3G18300
fragaria_vesca FvH4_5g11870
malus_domestica MD06G1217800.v1.1 MD14G1228000.v1.1
prunus_persica Prupe.5G223000_v2.0.a1
pyrus_communis pycom06g19400 pycom14g18940
rosa_chinensis RchiOBHm_Chr7g0185721
rosa_laevigata RLG00000004889
rosa_multiflora Rmu_sc0002952.1_g000001
rosa_roxburghii Rroxscaffold_3G00268680
rosa_rugosa Rorug06G0470800
rosa_samantha Rh7AG071700 Rh7BG076300 Rh7CG076500 Rh7DG076300
rosa_wichuraiana Rw7G006350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 436
AciI CCGC 1 cut(s) 629
AcoI YGGCCR 1 cut(s) 52
AcuI CTGAAG 3 cut(s) 118, 138, 774
AfaI GTAC 1 cut(s) 690
AfiI CCNNNNNNNGG 2 cut(s) 266, 390
AgsI TTSAA 5 cut(s) 100, 266, 397, 477, 603
AhlI ACTAGT 1 cut(s) 17
AjnI CCWGG 2 cut(s) 71, 90
AluBI AGCT 3 cut(s) 132, 166, 724
AluI AGCT 3 cut(s) 132, 166, 724
Alw26I GTCTC 2 cut(s) 8, 198
AlwNI CAGNNNCTG 1 cut(s) 485
AoxI GGCC 2 cut(s) 52, 626
ApeKI GCWGC 2 cut(s) 405, 408
ArsI GACNNNNNNTTYG 2 cut(s) 359, 391
Asp700I GAANNNNTTC 1 cut(s) 472
AspS9I GGNCC 1 cut(s) 352
AsuHPI GGTGA 2 cut(s) 116, 687
AvaII GGWCC 1 cut(s) 352
AxyI CCTNAGG 1 cut(s) 342
BalI TGGCCA 1 cut(s) 54
BbvI GCAGC 2 cut(s) 417, 420
BccI CCATC 2 cut(s) 640, 700
BceAI ACGGC 1 cut(s) 682
BciT130I CCWGG 2 cut(s) 73, 92
BcoDI GTCTC 2 cut(s) 8, 198
BcuI ACTAGT 1 cut(s) 17
BfaI CTAG 2 cut(s) 18, 708
BisI GCNGC 3 cut(s) 406, 409, 629
BlsI GCNGC 3 cut(s) 407, 410, 630
Bme1390I CCNGG 2 cut(s) 73, 92
Bme18I GGWCC 1 cut(s) 352
BmgT120I GGNCC 1 cut(s) 352
BmrFI CCNGG 2 cut(s) 73, 92
BmsI GCATC 3 cut(s) 214, 511, 665
BplI GAGNNNNNCTC 2 cut(s) 155, 187
BsaJI CCNNGG 3 cut(s) 71, 175, 623
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 390
Bse21I CCTNAGG 1 cut(s) 342
Bse3DI GCAATG 1 cut(s) 676
BseBI CCWGG 2 cut(s) 73, 92
BseDI CCNNGG 3 cut(s) 71, 175, 623
BseGI GGATG 4 cut(s) 229, 334, 526, 584
BseLI CCNNNNNNNGG 2 cut(s) 266, 390
BseMI GCAATG 1 cut(s) 676
BseMII CTCAG 2 cut(s) 333, 386
BseRI GAGGAG 3 cut(s) 15, 249, 666
BseXI GCAGC 2 cut(s) 417, 420
BshFI GGCC 2 cut(s) 54, 628
BslI CCNNNNNNNGG 2 cut(s) 266, 390
BsmAI GTCTC 2 cut(s) 8, 198
BsmI GAATGC 1 cut(s) 621
BsnI GGCC 2 cut(s) 54, 628
Bsp143I GATC 2 cut(s) 46, 209
Bsp19I CCATGG 1 cut(s) 175
BspACI CCGC 1 cut(s) 629
BspANI GGCC 2 cut(s) 54, 628
BspCNI CTCAG 2 cut(s) 334, 385
BspHI TCATGA 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 676
BssECI CCNNGG 3 cut(s) 71, 175, 623
BssMI GATC 2 cut(s) 46, 209
BssT1I CCWWGG 1 cut(s) 175
Bst2UI CCWGG 2 cut(s) 73, 92
Bst4CI ACNGT 1 cut(s) 321
Bst6I CTCTTC 3 cut(s) 258, 267, 425
BstDEI CTNAG 2 cut(s) 342, 372
BstDSI CCRYGG 1 cut(s) 175
BstENI CCTNNNNNAGG 1 cut(s) 264
BstF5I GGATG 4 cut(s) 229, 334, 526, 584
BstKTI GATC 2 cut(s) 49, 212
BstMAI GTCTC 2 cut(s) 8, 198
BstMBI GATC 2 cut(s) 46, 209
BstMWI GCNNNNNNNGC 3 cut(s) 145, 233, 625
BstNI CCWGG 2 cut(s) 73, 92
BstSCI CCNGG 2 cut(s) 71, 90
BstV1I GCAGC 2 cut(s) 417, 420
Bsu36I CCTNAGG 1 cut(s) 342
BsuRI GGCC 2 cut(s) 54, 628
BtgI CCRYGG 1 cut(s) 175
BtsCI GGATG 4 cut(s) 229, 334, 526, 584
CaiI CAGNNNCTG 1 cut(s) 485
CciI TCATGA 1 cut(s) 43
Cfr13I GGNCC 1 cut(s) 352
Csp6I GTAC 1 cut(s) 689
CviAII CATG 5 cut(s) 44, 176, 325, 527, 647
CviJI RGCY 9 cut(s) 54, 132, 148, 166, 236, 370, 411, 628, 724
CviKI_1 RGCY 9 cut(s) 54, 132, 148, 166, 236, 370, 411, 628, 724
CviQI GTAC 1 cut(s) 689
DdeI CTNAG 2 cut(s) 342, 372
DpnI GATC 2 cut(s) 48, 211
DpnII GATC 2 cut(s) 46, 209
EaeI YGGCCR 1 cut(s) 52
Eam1104I CTCTTC 3 cut(s) 258, 267, 425
EarI CTCTTC 3 cut(s) 258, 267, 425
Eco130I CCWWGG 1 cut(s) 175
Eco47I GGWCC 1 cut(s) 352
Eco57I CTGAAG 3 cut(s) 118, 138, 774
Eco81I CCTNAGG 1 cut(s) 342
EcoNI CCTNNNNNAGG 1 cut(s) 264
EcoRII CCWGG 2 cut(s) 71, 90
EcoT14I CCWWGG 1 cut(s) 175
ErhI CCWWGG 1 cut(s) 175
FaeI CATG 5 cut(s) 47, 179, 328, 530, 650
FatI CATG 5 cut(s) 43, 175, 324, 526, 646
FblI GTMKAC 1 cut(s) 436
Fnu4HI GCNGC 3 cut(s) 406, 409, 629
FokI GGATG 4 cut(s) 236, 341, 533, 571
Fsp4HI GCNGC 3 cut(s) 406, 409, 629
FspBI CTAG 2 cut(s) 18, 708
GluI GCNGC 3 cut(s) 406, 409, 629
HaeIII GGCC 2 cut(s) 54, 628
Hin1II CATG 5 cut(s) 47, 179, 328, 530, 650
HincII GTYRAC 1 cut(s) 507
HindII GTYRAC 1 cut(s) 507
HindIII AAGCTT 1 cut(s) 130
HinfI GANTC 4 cut(s) 80, 180, 274, 433
HphI GGTGA 2 cut(s) 116, 687
Hpy166II GTNNAC 2 cut(s) 437, 507
Hpy188I TCNGA 2 cut(s) 13, 273
Hpy188III TCNNGA 5 cut(s) 44, 341, 397, 419, 708
Hpy8I GTNNAC 2 cut(s) 437, 507
HpyAV CCTTC 4 cut(s) 159, 394, 634, 749
HpyCH4III ACNGT 1 cut(s) 321
HpyCH4V TGCA 3 cut(s) 196, 227, 719
HpyF10VI GCNNNNNNNGC 3 cut(s) 145, 233, 625
HpyF3I CTNAG 2 cut(s) 342, 372
Hsp92II CATG 5 cut(s) 47, 179, 328, 530, 650
Kzo9I GATC 2 cut(s) 46, 209
LmnI GCTCC 2 cut(s) 93, 653
Lsp1109I GCAGC 2 cut(s) 417, 420
LweI GCATC 3 cut(s) 214, 511, 665
MaeI CTAG 2 cut(s) 18, 708
MaeIII GTNAC 1 cut(s) 447
MalI GATC 2 cut(s) 48, 211
MboI GATC 2 cut(s) 46, 209
MboII GAAGA 8 cut(s) 144, 245, 254, 442, 477, 585, 591, 778
MlsI TGGCCA 1 cut(s) 54
MluCI AATT 2 cut(s) 313, 472
MluNI TGGCCA 1 cut(s) 54
MlyI GAGTC 2 cut(s) 189, 442
Mox20I TGGCCA 1 cut(s) 54
MroXI GAANNNNTTC 1 cut(s) 472
MscI TGGCCA 1 cut(s) 54
MseI TTAA 2 cut(s) 414, 683
MslI CAYNNNNRTG 1 cut(s) 329
Msp20I TGGCCA 1 cut(s) 54
MspR9I CCNGG 2 cut(s) 73, 92
Mva1269I GAATGC 1 cut(s) 621
MvaI CCWGG 2 cut(s) 73, 92
MwoI GCNNNNNNNGC 3 cut(s) 145, 233, 625
NcoI CCATGG 1 cut(s) 175
NdeII GATC 2 cut(s) 46, 209
NlaIII CATG 5 cut(s) 47, 179, 328, 530, 650
PagI TCATGA 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 672
PctI GAATGC 1 cut(s) 621
PdmI GAANNNNTTC 1 cut(s) 472
PfeI GAWTC 2 cut(s) 80, 274
PfoI TCCNGGA 1 cut(s) 90
PkrI GCNGC 3 cut(s) 407, 410, 630
PleI GAGTC 2 cut(s) 188, 441
PpsI GAGTC 2 cut(s) 188, 441
Psp6I CCWGG 2 cut(s) 71, 90
PspGI CCWGG 2 cut(s) 71, 90
PspPI GGNCC 1 cut(s) 352
PstNI CAGNNNCTG 1 cut(s) 485
RsaI GTAC 1 cut(s) 690
RsaNI GTAC 1 cut(s) 689
RseI CAYNNNNRTG 1 cut(s) 329
SaqAI TTAA 2 cut(s) 414, 683
SatI GCNGC 3 cut(s) 406, 409, 629
Sau3AI GATC 2 cut(s) 46, 209
Sau96I GGNCC 1 cut(s) 352
SchI GAGTC 2 cut(s) 189, 442
ScrFI CCNGG 2 cut(s) 73, 92
SetI ASST 9 cut(s) 134, 168, 193, 246, 271, 506, 562, 700, 726
SfaNI GCATC 3 cut(s) 214, 511, 665
SinI GGWCC 1 cut(s) 352
SmiMI CAYNNNNRTG 1 cut(s) 329
SpeI ACTAGT 1 cut(s) 17
Sse9I AATT 2 cut(s) 313, 472
SsiI CCGC 1 cut(s) 629
SspMI CTAG 2 cut(s) 18, 708
StyD4I CCNGG 2 cut(s) 71, 90
StyI CCWWGG 1 cut(s) 175
TaaI ACNGT 1 cut(s) 321
TaqI TCGA 1 cut(s) 28
TasI AATT 2 cut(s) 313, 472
TauI GCSGC 1 cut(s) 631
TfiI GAWTC 2 cut(s) 80, 274
Tru1I TTAA 2 cut(s) 414, 683
Tru9I TTAA 2 cut(s) 414, 683
TseI GCWGC 2 cut(s) 405, 408
TspDTI ATGAA 2 cut(s) 313, 585
VpaK11BI GGWCC 1 cut(s) 352
XagI CCTNNNNNAGG 1 cut(s) 264
XbaI TCTAGA 1 cut(s) 707
XmiI GTMKAC 1 cut(s) 436
XmnI GAANNNNTTC 1 cut(s) 472
XspI CTAG 2 cut(s) 18, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.