FvH4_5g11870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0010835
Physical Location & Seq
Reverse (-)
6724250 .. 6725041
792 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g11870.t1

Sequence Viewer

Length: 792 bp
ATGATGTGTTCGGATACGAGTCCTCCTCGAATATCTTTTTCTCATGATCTTGGCCAAGCAGACGTTAAACCCAGAAGAGATGCTTCACTGCTGGATATGAATTGTGACTTTGAGTTCAGCATTAGCAGAAGTTTCAGGCAAGATGAGCCTTCTTCAGCAGATGAGCTTTTCTCCCATGGAGTCATCAGACCTATGCAACCCAGAGAGAGATTATCAGTTGAGGATGCACCAAAAGCCAGACACCTTTATTCTCTTCCTCCTCTTTCAAGTCAGAATCCAAAGAAAGAGACCACCAACAATGACAATTCACAGTTCATGGATGTGAACAGTACTGAAGATTTGGAACAAAACAACACAAAGCCTCAGTCCAAGTCCTTCTGGGGGTTCAAGAGAAGCAGCAGCCTCAACCAAGAGAACAAGAAAAGCCTACTTTGCTCATTACCAGAGTTCTTGAGAAGAAGCAACTCAACAGGGTCAGCCCCAAATCCAAAGAGGTCTTCAATATACAAGGAAGCTCAGGCTCAACAGAAAAGACAGTCATCATCATCATCATCAGGTTTTATGTCAAAGTCATCATCAACATCATCCTCGTCTTCTTCAAGTCAATACCGAATGCTACCGAGGCCGCCATCAAAGAAGGGTCATGGAGGATCATCGAACTATGGCAATGGTGTTCGGATTAGTCCTGTCTTAAATGTACCATCACCTTACATTTCTAGAGGAACTGCTAAGCTCTTTTGTTTGAGTTCATTTCTATACCCTGAAGGAAAAGAGAAGAAGCAAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

264

Amino Acids

29.29

Weight (kDa)

9.74

Isoelectric Point (pI)

68.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 53 - 199 6.3e-06 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010835)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48780 AT1G48780 AT3G18300 AT3G18300
fragaria_vesca FvH4_5g11870
malus_domestica MD06G1217800.v1.1 MD14G1228000.v1.1
prunus_persica Prupe.5G223000_v2.0.a1
pyrus_communis pycom06g19400 pycom14g18940
rosa_chinensis RchiOBHm_Chr7g0185721
rosa_laevigata RLG00000004889
rosa_multiflora Rmu_sc0002952.1_g000001
rosa_roxburghii Rroxscaffold_3G00268680
rosa_rugosa Rorug06G0470800
rosa_samantha Rh7AG071700 Rh7BG076300 Rh7CG076500 Rh7DG076300
rosa_wichuraiana Rw7G006350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 626
AclWI GGATC 1 cut(s) 658
AcoI YGGCCR 1 cut(s) 52
AcuI CTGAAG 3 cut(s) 138, 354, 783
AfaI GTAC 2 cut(s) 331, 699
AfiI CCNNNNNNNGG 1 cut(s) 381
AgsI TTSAA 4 cut(s) 267, 388, 501, 600
AjuI GAANNNNNNNTTGG 2 cut(s) 481, 513
AluBI AGCT 3 cut(s) 166, 515, 733
AluI AGCT 3 cut(s) 166, 515, 733
Alw26I GTCTC 1 cut(s) 281
AlwI GGATC 1 cut(s) 658
AoxI GGCC 2 cut(s) 52, 623
ApeKI GCWGC 2 cut(s) 396, 399
ArsI GACNNNNNNTTYG 2 cut(s) 350, 382
AsuHPI GGTGA 1 cut(s) 696
BalI TGGCCA 1 cut(s) 54
BbsI GAAGAC 2 cut(s) 489, 585
BbvI GCAGC 2 cut(s) 408, 411
BccI CCATC 2 cut(s) 637, 709
BciVI GTATCC 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 1 cut(s) 717
BfuI GTATCC 1 cut(s) 7
BisI GCNGC 3 cut(s) 397, 400, 626
BlpI GCTNAGC 1 cut(s) 729
BlsI GCNGC 3 cut(s) 398, 401, 627
BmcAI AGTACT 1 cut(s) 331
BmsI GCATC 2 cut(s) 70, 214
BpiI GAAGAC 2 cut(s) 489, 585
BplI GAGNNNNNCTC 4 cut(s) 10, 42, 155, 187
Bpu10I CCTNAGC 1 cut(s) 516
Bpu1102I GCTNAGC 1 cut(s) 729
BpuEI CTTGAG 1 cut(s) 472
BsaI GGTCTC 1 cut(s) 281
BsaJI CCNNGG 2 cut(s) 175, 620
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 1 cut(s) 381
Bse3DI GCAATG 1 cut(s) 673
BseDI CCNNGG 2 cut(s) 175, 620
BseGI GGATG 3 cut(s) 229, 325, 584
BseLI CCNNNNNNNGG 1 cut(s) 381
BseMI GCAATG 1 cut(s) 673
BseMII CTCAG 2 cut(s) 377, 530
BseRI GAGGAG 2 cut(s) 15, 249
BseXI GCAGC 2 cut(s) 408, 411
BshFI GGCC 2 cut(s) 54, 625
BslI CCNNNNNNNGG 1 cut(s) 381
BsmAI GTCTC 1 cut(s) 281
BsmI GAATGC 1 cut(s) 618
BsnI GGCC 2 cut(s) 54, 625
Bso31I GGTCTC 1 cut(s) 281
Bsp143I GATC 2 cut(s) 46, 650
Bsp1720I GCTNAGC 1 cut(s) 729
Bsp19I CCATGG 1 cut(s) 175
BspACI CCGC 1 cut(s) 626
BspANI GGCC 2 cut(s) 54, 625
BspCNI CTCAG 2 cut(s) 376, 529
BspHI TCATGA 1 cut(s) 43
BspPI GGATC 1 cut(s) 658
BspTNI GGTCTC 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 673
BssECI CCNNGG 2 cut(s) 175, 620
BssMI GATC 2 cut(s) 46, 650
BssT1I CCWWGG 1 cut(s) 175
Bst4CI ACNGT 3 cut(s) 312, 329, 537
Bst6I CTCTTC 2 cut(s) 70, 258
BstDEI CTNAG 3 cut(s) 363, 516, 729
BstDSI CCRYGG 1 cut(s) 175
BstF5I GGATG 3 cut(s) 229, 325, 584
BstKTI GATC 2 cut(s) 49, 653
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 2 cut(s) 46, 650
BstMWI GCNNNNNNNGC 4 cut(s) 145, 233, 432, 622
BstV1I GCAGC 2 cut(s) 408, 411
BstV2I GAAGAC 2 cut(s) 489, 585
BsuI GTATCC 1 cut(s) 7
BsuRI GGCC 2 cut(s) 54, 625
BtgI CCRYGG 1 cut(s) 175
BtsCI GGATG 3 cut(s) 229, 325, 584
BtsI GCAGTG 1 cut(s) 86
BtsIMutI CAGTG 1 cut(s) 86
CciI TCATGA 1 cut(s) 43
Csp6I GTAC 2 cut(s) 330, 698
CviAII CATG 4 cut(s) 44, 176, 316, 644
CviQI GTAC 2 cut(s) 330, 698
DdeI CTNAG 3 cut(s) 363, 516, 729
DpnI GATC 2 cut(s) 48, 652
DpnII GATC 2 cut(s) 46, 650
EaeI YGGCCR 1 cut(s) 52
Eam1104I CTCTTC 2 cut(s) 70, 258
EarI CTCTTC 2 cut(s) 70, 258
Eco130I CCWWGG 1 cut(s) 175
Eco31I GGTCTC 1 cut(s) 281
Eco57I CTGAAG 3 cut(s) 138, 354, 783
EcoT14I CCWWGG 1 cut(s) 175
ErhI CCWWGG 1 cut(s) 175
FaeI CATG 4 cut(s) 47, 179, 319, 647
FalI AAGNNNNNCTT 2 cut(s) 67, 99
FatI CATG 4 cut(s) 43, 175, 315, 643
Fnu4HI GCNGC 3 cut(s) 397, 400, 626
FokI GGATG 3 cut(s) 236, 332, 571
Fsp4HI GCNGC 3 cut(s) 397, 400, 626
FspBI CTAG 1 cut(s) 717
GluI GCNGC 3 cut(s) 397, 400, 626
HaeIII GGCC 2 cut(s) 54, 625
Hin1II CATG 4 cut(s) 47, 179, 319, 647
HinfI GANTC 3 cut(s) 19, 180, 274
HphI GGTGA 1 cut(s) 696
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 4 cut(s) 13, 188, 273, 678
Hpy188III TCNNGA 4 cut(s) 44, 388, 451, 717
Hpy8I GTNNAC 1 cut(s) 325
HpyAV CCTTC 4 cut(s) 159, 385, 631, 758
HpyCH4III ACNGT 3 cut(s) 312, 329, 537
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 2 cut(s) 196, 227
HpyF10VI GCNNNNNNNGC 4 cut(s) 145, 233, 432, 622
HpyF3I CTNAG 3 cut(s) 363, 516, 729
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 4 cut(s) 47, 179, 319, 647
Kzo9I GATC 2 cut(s) 46, 650
Lsp1109I GCAGC 2 cut(s) 408, 411
LweI GCATC 2 cut(s) 70, 214
MaeI CTAG 1 cut(s) 717
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 104
MalI GATC 2 cut(s) 48, 652
MboI GATC 2 cut(s) 46, 650
MboII GAAGA 9 cut(s) 87, 144, 245, 347, 468, 489, 585, 588, 787
MlsI TGGCCA 1 cut(s) 54
MluCI AATT 2 cut(s) 100, 304
MluNI TGGCCA 1 cut(s) 54
MlyI GAGTC 2 cut(s) 28, 189
Mox20I TGGCCA 1 cut(s) 54
MscI TGGCCA 1 cut(s) 54
MseI TTAA 2 cut(s) 66, 692
MslI CAYNNNNRTG 1 cut(s) 320
Msp20I TGGCCA 1 cut(s) 54
Mva1269I GAATGC 1 cut(s) 618
MwoI GCNNNNNNNGC 4 cut(s) 145, 233, 432, 622
NcoI CCATGG 1 cut(s) 175
NdeII GATC 2 cut(s) 46, 650
NlaIII CATG 4 cut(s) 47, 179, 319, 647
NmuCI GTSAC 1 cut(s) 104
PagI TCATGA 1 cut(s) 43
PctI GAATGC 1 cut(s) 618
PfeI GAWTC 1 cut(s) 274
PkrI GCNGC 3 cut(s) 398, 401, 627
PleI GAGTC 2 cut(s) 27, 188
PpsI GAGTC 2 cut(s) 27, 188
RsaI GTAC 2 cut(s) 331, 699
RsaNI GTAC 2 cut(s) 330, 698
RseI CAYNNNNRTG 1 cut(s) 320
SaqAI TTAA 2 cut(s) 66, 692
SatI GCNGC 3 cut(s) 397, 400, 626
Sau3AI GATC 2 cut(s) 46, 650
ScaI AGTACT 1 cut(s) 331
SchI GAGTC 2 cut(s) 28, 189
SetI ASST 9 cut(s) 66, 168, 193, 246, 497, 517, 559, 709, 735
SfaNI GCATC 2 cut(s) 70, 214
SmiMI CAYNNNNRTG 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 451
SmoI CTYRAG 1 cut(s) 451
Sse9I AATT 2 cut(s) 100, 304
SsiI CCGC 1 cut(s) 626
SspMI CTAG 1 cut(s) 717
StyI CCWWGG 1 cut(s) 175
TaaI ACNGT 3 cut(s) 312, 329, 537
TaiI ACGT 1 cut(s) 66
TaqI TCGA 2 cut(s) 28, 656
TasI AATT 2 cut(s) 100, 304
TatI WGTACW 1 cut(s) 329
TauI GCSGC 1 cut(s) 628
TfiI GAWTC 1 cut(s) 274
Tru1I TTAA 2 cut(s) 66, 692
Tru9I TTAA 2 cut(s) 66, 692
TscAI CASTG 1 cut(s) 93
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 2 cut(s) 396, 399
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 3 cut(s) 113, 304, 738
TspRI CASTG 1 cut(s) 93
XbaI TCTAGA 1 cut(s) 716
XspI CTAG 1 cut(s) 717
ZrmI AGTACT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.