Rw7G006350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0010835
Physical Location & Seq
Forward (+)
5391569 .. 5393269
1701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G006350.1

Sequence Viewer

Length: 780 bp
ATGCTGTGTTCGGAGACTAGTCCTCCTCGAATATCATTTTCTCATGATCTTGGCCAAGCAGATATGATACCCAGGAGGGATTCCTCGCTGCTGGACTTGAATGGTGATTTTGAGTTCAGCATTAGCAGAAGCTTCAGGCAAGATGAGCCTTCTTCAGCAGATGAGCTTTTCTCCCATGGAGTCATCAAACCTATGCAACCGAGAGACAGATCATCAGTTGAGGATGCACCAAAAGCCAGACACCTTTATTCTCTTCCTCCTCTTCAAGGTCAGAATCCAAAGAAAAAGACCACCAGCAAGGACAACAATGATAATTCACAGTTCATGGATGTGAATAGTCCTGAAGATGTGGACCAGCAAAACACGAAGCCTCAGTCCAAGTCCTTCTGGGGGTTCAAGAGAAGCAGCAGCCTTAATCAAGAGAACAGGAAGAGTCTACTTTGCTCATTACCAGAGTTTTTGAGAAGAAGCAATTCAACAGGGTCTGCCCCAAACCCAAAGAGGTCAACAATATACAAGGATGCTCATGCTCAACAGAAAAGGCAGTCCTCATCAGGTTTTATGTCAAAGTCATCATCAACATCCTCATCTTCATCTTCAAATCAATACCGAATGCTACCGAGGCCGCCGTCAAAGAAGGGTCATGGAGGAGCATCAAACTACGGCAATGGCGTTGTGTTAAATGTACCATCACCTCACATTTCTAGAGGAACTGCAAAGCTCTTTTGTTTGAGTTCTTTTCTATACCCTGAAGGAAAGGAGAAGAAGCAAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

259

Amino Acids

28.82

Weight (kDa)

9.79

Isoelectric Point (pI)

65.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010835)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48780 AT1G48780 AT3G18300 AT3G18300
fragaria_vesca FvH4_5g11870
malus_domestica MD06G1217800.v1.1 MD14G1228000.v1.1
prunus_persica Prupe.5G223000_v2.0.a1
pyrus_communis pycom06g19400 pycom14g18940
rosa_chinensis RchiOBHm_Chr7g0185721
rosa_laevigata RLG00000004889
rosa_multiflora Rmu_sc0002952.1_g000001
rosa_roxburghii Rroxscaffold_3G00268680
rosa_rugosa Rorug06G0470800
rosa_samantha Rh7AG071700 Rh7BG076300 Rh7CG076500 Rh7DG076300
rosa_wichuraiana Rw7G006350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 436
AciI CCGC 1 cut(s) 626
AcoI YGGCCR 1 cut(s) 52
AcuI CTGAAG 4 cut(s) 118, 138, 363, 771
AfaI GTAC 1 cut(s) 687
AfiI CCNNNNNNNGG 2 cut(s) 266, 390
AgsI TTSAA 5 cut(s) 100, 266, 397, 477, 600
AhlI ACTAGT 1 cut(s) 17
AjnI CCWGG 1 cut(s) 71
AluBI AGCT 3 cut(s) 132, 166, 721
AluI AGCT 3 cut(s) 132, 166, 721
Alw26I GTCTC 2 cut(s) 8, 198
AlwNI CAGNNNCTG 1 cut(s) 485
AoxI GGCC 2 cut(s) 52, 623
ApeKI GCWGC 3 cut(s) 88, 405, 408
ArsI GACNNNNNNTTYG 2 cut(s) 359, 391
Asp700I GAANNNNTTC 1 cut(s) 472
AspS9I GGNCC 1 cut(s) 352
AsuHPI GGTGA 2 cut(s) 116, 684
AvaII GGWCC 1 cut(s) 352
BalI TGGCCA 1 cut(s) 54
BbvI GCAGC 3 cut(s) 75, 417, 420
BccI CCATC 1 cut(s) 697
BceAI ACGGC 2 cut(s) 613, 679
BciT130I CCWGG 1 cut(s) 73
BcoDI GTCTC 2 cut(s) 8, 198
BcuI ACTAGT 1 cut(s) 17
BfaI CTAG 2 cut(s) 18, 705
BisI GCNGC 4 cut(s) 89, 406, 409, 626
BlsI GCNGC 4 cut(s) 90, 407, 410, 627
Bme1390I CCNGG 1 cut(s) 73
Bme18I GGWCC 1 cut(s) 352
BmgT120I GGNCC 1 cut(s) 352
BmrFI CCNGG 1 cut(s) 73
BmsI GCATC 3 cut(s) 214, 511, 662
BplI GAGNNNNNCTC 2 cut(s) 155, 187
BsaJI CCNNGG 3 cut(s) 71, 175, 620
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 390
Bse3DI GCAATG 1 cut(s) 673
BseBI CCWGG 1 cut(s) 73
BseDI CCNNGG 3 cut(s) 71, 175, 620
BseGI GGATG 4 cut(s) 229, 334, 526, 581
BseLI CCNNNNNNNGG 2 cut(s) 266, 390
BseMI GCAATG 1 cut(s) 673
BseMII CTCAG 1 cut(s) 386
BseRI GAGGAG 3 cut(s) 15, 249, 663
BseXI GCAGC 3 cut(s) 75, 417, 420
BshFI GGCC 2 cut(s) 54, 625
BslI CCNNNNNNNGG 2 cut(s) 266, 390
BsmAI GTCTC 2 cut(s) 8, 198
BsmI GAATGC 1 cut(s) 618
BsnI GGCC 2 cut(s) 54, 625
Bsp143I GATC 2 cut(s) 46, 209
Bsp19I CCATGG 1 cut(s) 175
BspACI CCGC 1 cut(s) 626
BspANI GGCC 2 cut(s) 54, 625
BspCNI CTCAG 1 cut(s) 385
BspHI TCATGA 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 673
BssECI CCNNGG 3 cut(s) 71, 175, 620
BssMI GATC 2 cut(s) 46, 209
BssT1I CCWWGG 1 cut(s) 175
Bst2UI CCWGG 1 cut(s) 73
Bst4CI ACNGT 1 cut(s) 321
Bst6I CTCTTC 3 cut(s) 258, 267, 425
BstDEI CTNAG 1 cut(s) 372
BstDSI CCRYGG 1 cut(s) 175
BstENI CCTNNNNNAGG 1 cut(s) 264
BstF5I GGATG 4 cut(s) 229, 334, 526, 581
BstKTI GATC 2 cut(s) 49, 212
BstMAI GTCTC 2 cut(s) 8, 198
BstMBI GATC 2 cut(s) 46, 209
BstMWI GCNNNNNNNGC 3 cut(s) 145, 233, 622
BstNI CCWGG 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 71
BstV1I GCAGC 3 cut(s) 75, 417, 420
BsuRI GGCC 2 cut(s) 54, 625
BtgI CCRYGG 1 cut(s) 175
BtsCI GGATG 4 cut(s) 229, 334, 526, 581
CaiI CAGNNNCTG 1 cut(s) 485
CciI TCATGA 1 cut(s) 43
Cfr13I GGNCC 1 cut(s) 352
Csp6I GTAC 1 cut(s) 686
CviAII CATG 5 cut(s) 44, 176, 325, 527, 644
CviJI RGCY 9 cut(s) 54, 132, 148, 166, 236, 370, 411, 625, 721
CviKI_1 RGCY 9 cut(s) 54, 132, 148, 166, 236, 370, 411, 625, 721
CviQI GTAC 1 cut(s) 686
DdeI CTNAG 1 cut(s) 372
DpnI GATC 2 cut(s) 48, 211
DpnII GATC 2 cut(s) 46, 209
EaeI YGGCCR 1 cut(s) 52
Eam1104I CTCTTC 3 cut(s) 258, 267, 425
EarI CTCTTC 3 cut(s) 258, 267, 425
Eco130I CCWWGG 1 cut(s) 175
Eco47I GGWCC 1 cut(s) 352
Eco57I CTGAAG 4 cut(s) 118, 138, 363, 771
EcoNI CCTNNNNNAGG 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 71
EcoT14I CCWWGG 1 cut(s) 175
ErhI CCWWGG 1 cut(s) 175
FaeI CATG 5 cut(s) 47, 179, 328, 530, 647
FatI CATG 5 cut(s) 43, 175, 324, 526, 643
FblI GTMKAC 1 cut(s) 436
Fnu4HI GCNGC 4 cut(s) 89, 406, 409, 626
FokI GGATG 4 cut(s) 236, 341, 533, 568
Fsp4HI GCNGC 4 cut(s) 89, 406, 409, 626
FspBI CTAG 2 cut(s) 18, 705
GluI GCNGC 4 cut(s) 89, 406, 409, 626
HaeIII GGCC 2 cut(s) 54, 625
Hin1II CATG 5 cut(s) 47, 179, 328, 530, 647
HincII GTYRAC 1 cut(s) 507
HindII GTYRAC 1 cut(s) 507
HindIII AAGCTT 1 cut(s) 130
HinfI GANTC 4 cut(s) 80, 180, 274, 433
HphI GGTGA 2 cut(s) 116, 684
Hpy166II GTNNAC 3 cut(s) 352, 437, 507
Hpy188I TCNGA 2 cut(s) 13, 273
Hpy188III TCNNGA 5 cut(s) 44, 341, 397, 419, 705
Hpy8I GTNNAC 3 cut(s) 352, 437, 507
HpyAV CCTTC 4 cut(s) 159, 394, 631, 746
HpyCH4III ACNGT 1 cut(s) 321
HpyCH4V TGCA 3 cut(s) 196, 227, 716
HpyF10VI GCNNNNNNNGC 3 cut(s) 145, 233, 622
HpyF3I CTNAG 1 cut(s) 372
Hsp92II CATG 5 cut(s) 47, 179, 328, 530, 647
Kzo9I GATC 2 cut(s) 46, 209
LmnI GCTCC 1 cut(s) 650
Lsp1109I GCAGC 3 cut(s) 75, 417, 420
LweI GCATC 3 cut(s) 214, 511, 662
MaeI CTAG 2 cut(s) 18, 705
MalI GATC 2 cut(s) 48, 211
MboI GATC 2 cut(s) 46, 209
MboII GAAGA 9 cut(s) 144, 245, 254, 356, 442, 477, 582, 588, 775
MlsI TGGCCA 1 cut(s) 54
MluCI AATT 2 cut(s) 313, 472
MluNI TGGCCA 1 cut(s) 54
MlyI GAGTC 2 cut(s) 189, 442
Mox20I TGGCCA 1 cut(s) 54
MroXI GAANNNNTTC 1 cut(s) 472
MscI TGGCCA 1 cut(s) 54
MseI TTAA 2 cut(s) 414, 680
MslI CAYNNNNRTG 1 cut(s) 329
Msp20I TGGCCA 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 73
Mva1269I GAATGC 1 cut(s) 618
MvaI CCWGG 1 cut(s) 73
MwoI GCNNNNNNNGC 3 cut(s) 145, 233, 622
NcoI CCATGG 1 cut(s) 175
NdeII GATC 2 cut(s) 46, 209
NlaIII CATG 5 cut(s) 47, 179, 328, 530, 647
PagI TCATGA 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 669
PctI GAATGC 1 cut(s) 618
PdmI GAANNNNTTC 1 cut(s) 472
PfeI GAWTC 2 cut(s) 80, 274
PkrI GCNGC 4 cut(s) 90, 407, 410, 627
PleI GAGTC 2 cut(s) 188, 441
PpsI GAGTC 2 cut(s) 188, 441
Psp6I CCWGG 1 cut(s) 71
PspGI CCWGG 1 cut(s) 71
PspPI GGNCC 1 cut(s) 352
PstNI CAGNNNCTG 1 cut(s) 485
RsaI GTAC 1 cut(s) 687
RsaNI GTAC 1 cut(s) 686
RseI CAYNNNNRTG 1 cut(s) 329
SaqAI TTAA 2 cut(s) 414, 680
SatI GCNGC 4 cut(s) 89, 406, 409, 626
Sau3AI GATC 2 cut(s) 46, 209
Sau96I GGNCC 1 cut(s) 352
SchI GAGTC 2 cut(s) 189, 442
ScrFI CCNGG 1 cut(s) 73
SetI ASST 9 cut(s) 134, 168, 193, 246, 271, 506, 559, 697, 723
SfaNI GCATC 3 cut(s) 214, 511, 662
SinI GGWCC 1 cut(s) 352
SmiMI CAYNNNNRTG 1 cut(s) 329
SpeI ACTAGT 1 cut(s) 17
Sse9I AATT 2 cut(s) 313, 472
SsiI CCGC 1 cut(s) 626
SspMI CTAG 2 cut(s) 18, 705
StyD4I CCNGG 1 cut(s) 71
StyI CCWWGG 1 cut(s) 175
TaaI ACNGT 1 cut(s) 321
TaqI TCGA 1 cut(s) 28
TasI AATT 2 cut(s) 313, 472
TauI GCSGC 1 cut(s) 628
TfiI GAWTC 2 cut(s) 80, 274
Tru1I TTAA 2 cut(s) 414, 680
Tru9I TTAA 2 cut(s) 414, 680
TseI GCWGC 3 cut(s) 88, 405, 408
TspDTI ATGAA 2 cut(s) 313, 582
VpaK11BI GGWCC 1 cut(s) 352
XagI CCTNNNNNAGG 1 cut(s) 264
XbaI TCTAGA 1 cut(s) 704
XmiI GTMKAC 1 cut(s) 436
XmnI GAANNNNTTC 1 cut(s) 472
XspI CTAG 2 cut(s) 18, 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.