AT3G18300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010835
Physical Location & Seq
Forward (+)
6281923 .. 6284372
2450 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18300.1

Sequence Viewer

Length: 825 bp
ATGATCTGCACGGAGTCAAACCACCAGCGGTTTTCGTTTGCTGGTGATCTCGGCCAGTCCGATAAAGGAACTCCTATGGAACAACAACCATCAGGCCCGGTCCGAAGAGACACCACTCTTTTGGATTCATCAAACTCAGATTTCGAGTTCCACATCTCAAGCAACTTTGATCCTGGAGATTCCTCACCAGCTGACGAGATATTTGCGGACGGCATGATCCTCCCAGTTCTTCCTTTCCAAGTCACAGCTACATCCACCATGCCAAAACGTCTCTACAAATATGAGCTCCCTCCTATTGTCTCTGCTCCAACCTTATCCTCTTATCTTCCTCCTCTGCCTTTACCATTGCCTGAACACTCAAGAAAATACAGCGTGAAAGAAACTCGAGGAAGCCTAAATGGACGAGGGAGCGGTGCAAATTCGGATTCAGAGGCAGAGAAATCATCAAAGTCGTTTTGGAGCTTCAAGAGAAGCTCAAGCCTGAACTGCGATATAAAGAAGAGTCTGATCTGTTCGTTTCCTCGTTTAACGAGAAGCAATTCCACAGGATCAGTGGCGATTTCGAAGAGGGAAATGCTTAGGGACATTAACAAGCATAGCTCGCAGAGACATGGAGTCCCACGTCCAGGGGTGAATCCATCATCTCATATGCGTCCTCCTTCCTCTTTCTGCTGCAGCTCGTATCAGTTCAGGCCACAAAAACACGCCGGAAAGAATGGTGGCGGAAGAGGAGGAAGTTTTTGGATTGCTCCGGTGATCGGTGGTCCATCTCCGTTTGGGTTAGGATCCATCTTACGACTTACGAAAGAGAAAAAAAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

274

Amino Acids

29.94

Weight (kDa)

9.75

Isoelectric Point (pI)

61.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010835)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48780 AT1G48780 AT3G18300 AT3G18300
fragaria_vesca FvH4_5g11870
malus_domestica MD06G1217800.v1.1 MD14G1228000.v1.1
prunus_persica Prupe.5G223000_v2.0.a1
pyrus_communis pycom06g19400 pycom14g18940
rosa_chinensis RchiOBHm_Chr7g0185721
rosa_laevigata RLG00000004889
rosa_multiflora Rmu_sc0002952.1_g000001
rosa_roxburghii Rroxscaffold_3G00268680
rosa_rugosa Rorug06G0470800
rosa_samantha Rh7AG071700 Rh7BG076300 Rh7CG076500 Rh7DG076300
rosa_wichuraiana Rw7G006350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 411
AciI CCGC 4 cut(s) 28, 206, 411, 723
AclWI GGATC 5 cut(s) 164, 211, 556, 780, 793
AcoI YGGCCR 1 cut(s) 52
AcsI RAATTY 1 cut(s) 418
AfiI CCNNNNNNNGG 2 cut(s) 626, 758
AgsI TTSAA 1 cut(s) 466
AhdI GACNNNNNGTC 1 cut(s) 614
AjiI CACGTC 1 cut(s) 623
AjnI CCWGG 2 cut(s) 172, 625
AluBI AGCT 7 cut(s) 191, 248, 286, 462, 474, 600, 678
AluI AGCT 7 cut(s) 191, 248, 286, 462, 474, 600, 678
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 4 cut(s) 102, 275, 304, 601
AlwI GGATC 5 cut(s) 164, 211, 556, 780, 793
Ama87I CYCGRG 1 cut(s) 384
AoxI GGCC 3 cut(s) 52, 94, 692
ApeKI GCWGC 2 cut(s) 672, 675
ApoI RAATTY 1 cut(s) 418
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
Asp700I GAANNNNTTC 1 cut(s) 538
AspS9I GGNCC 3 cut(s) 95, 100, 764
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 4 cut(s) 56, 177, 643, 766
AsuII TTCGAA 1 cut(s) 563
AvaI CYCGRG 1 cut(s) 384
AvaII GGWCC 2 cut(s) 100, 764
BamHI GGATCC 1 cut(s) 785
BanII GRGCYC 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 2 cut(s) 659, 687
BccI CCATC 4 cut(s) 97, 646, 775, 797
BceAI ACGGC 1 cut(s) 226
BcgI CGANNNNNNTGC 2 cut(s) 185, 219
BciT130I CCWGG 2 cut(s) 174, 627
BcnI CCSGG 1 cut(s) 98
BcoDI GTCTC 4 cut(s) 102, 275, 304, 601
BfmI CTRYAG 1 cut(s) 673
BisI GCNGC 2 cut(s) 673, 676
BlsI GCNGC 2 cut(s) 674, 677
Bme1390I CCNGG 3 cut(s) 98, 174, 627
Bme18I GGWCC 2 cut(s) 100, 764
BmeRI GACNNNNNGTC 1 cut(s) 614
BmeT110I CYCGRG 1 cut(s) 384
BmgBI CACGTC 1 cut(s) 623
BmgT120I GGNCC 3 cut(s) 95, 100, 764
BmiI GGNNCC 1 cut(s) 787
BmrFI CCNGG 3 cut(s) 98, 174, 627
BmrI ACTGGG 1 cut(s) 218
BmuI ACTGGG 1 cut(s) 218
BpmI CTGGAG 1 cut(s) 195
Bpu10I CCTNAGC 1 cut(s) 578
Bpu14I TTCGAA 1 cut(s) 563
BpuEI CTTGAG 3 cut(s) 142, 343, 460
BpuMI CCSGG 1 cut(s) 98
BsaJI CCNNGG 1 cut(s) 626
BsaWI WCCGGW 1 cut(s) 751
Bsc4I CCNNNNNNNGG 2 cut(s) 626, 758
Bse1I ACTGG 2 cut(s) 55, 224
Bse3DI GCAATG 1 cut(s) 344
BseBI CCWGG 2 cut(s) 174, 627
BseDI CCNNGG 1 cut(s) 626
BseGI GGATG 1 cut(s) 251
BseLI CCNNNNNNNGG 2 cut(s) 626, 758
BseMI GCAATG 1 cut(s) 344
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 2 cut(s) 55, 224
BseRI GAGGAG 2 cut(s) 321, 744
BseXI GCAGC 2 cut(s) 659, 687
BshFI GGCC 3 cut(s) 54, 96, 694
BsiHKAI GWGCWC 1 cut(s) 288
BsiHKCI CYCGRG 1 cut(s) 384
BsiSI CCGG 3 cut(s) 98, 708, 752
BslFI GGGAC 2 cut(s) 596, 602
BslI CCNNNNNNNGG 2 cut(s) 626, 758
BsmAI GTCTC 4 cut(s) 102, 275, 304, 601
BsmBI CGTCTC 1 cut(s) 275
BsmFI GGGAC 2 cut(s) 596, 602
BsnI GGCC 3 cut(s) 54, 96, 694
BsoBI CYCGRG 1 cut(s) 384
Bsp119I TTCGAA 1 cut(s) 563
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 8 cut(s) 3, 46, 169, 216, 507, 548, 756, 785
BspACI CCGC 4 cut(s) 28, 206, 411, 723
BspANI GGCC 3 cut(s) 54, 96, 694
BspCNI CTCAG 1 cut(s) 149
BspLI GGNNCC 1 cut(s) 787
BspMAI CTGCAG 1 cut(s) 677
BspPI GGATC 5 cut(s) 164, 211, 556, 780, 793
BspT104I TTCGAA 1 cut(s) 563
BsrBI CCGCTC 1 cut(s) 411
BsrDI GCAATG 1 cut(s) 344
BsrI ACTGG 2 cut(s) 55, 224
BssECI CCNNGG 1 cut(s) 626
BssMI GATC 8 cut(s) 3, 46, 169, 216, 507, 548, 756, 785
Bst2UI CCWGG 2 cut(s) 174, 627
Bst6I CTCTTC 4 cut(s) 100, 494, 560, 721
BstBI TTCGAA 1 cut(s) 563
BstC8I GCNNGC 1 cut(s) 602
BstDEI CTNAG 2 cut(s) 136, 578
BstF5I GGATG 1 cut(s) 251
BstKTI GATC 8 cut(s) 6, 49, 172, 219, 510, 551, 759, 788
BstMAI GTCTC 4 cut(s) 102, 275, 304, 601
BstMBI GATC 8 cut(s) 3, 46, 169, 216, 507, 548, 756, 785
BstMWI GCNNNNNNNGC 2 cut(s) 486, 601
BstNI CCWGG 2 cut(s) 174, 627
BstSCI CCNGG 3 cut(s) 96, 172, 625
BstSFI CTRYAG 1 cut(s) 673
BstV1I GCAGC 2 cut(s) 659, 687
BstX2I RGATCY 1 cut(s) 785
BstXI CCANNNNNNTGG 1 cut(s) 121
BstYI RGATCY 1 cut(s) 785
BsuRI GGCC 3 cut(s) 54, 96, 694
BtrI CACGTC 1 cut(s) 623
BtsCI GGATG 1 cut(s) 251
BtsIMutI CAGTG 1 cut(s) 558
Cac8I GCNNGC 1 cut(s) 602
Cfr13I GGNCC 3 cut(s) 95, 100, 764
CpoI CGGWCCG 1 cut(s) 100
CseI GACGC 1 cut(s) 641
CspI CGGWCCG 1 cut(s) 100
CviAII CATG 3 cut(s) 214, 259, 611
DdeI CTNAG 2 cut(s) 136, 578
DpnI GATC 8 cut(s) 5, 48, 171, 218, 509, 550, 758, 787
DpnII GATC 8 cut(s) 3, 46, 169, 216, 507, 548, 756, 785
DriI GACNNNNNGTC 1 cut(s) 614
EaeI YGGCCR 1 cut(s) 52
Eam1104I CTCTTC 4 cut(s) 100, 494, 560, 721
Eam1105I GACNNNNNGTC 1 cut(s) 614
EarI CTCTTC 4 cut(s) 100, 494, 560, 721
EciI GGCGGA 1 cut(s) 738
Ecl136II GAGCTC 1 cut(s) 286
Eco24I GRGCYC 1 cut(s) 288
Eco47I GGWCC 2 cut(s) 100, 764
Eco53kI GAGCTC 1 cut(s) 286
Eco88I CYCGRG 1 cut(s) 384
EcoICRI GAGCTC 1 cut(s) 286
EcoRII CCWGG 2 cut(s) 172, 625
EcoT38I GRGCYC 1 cut(s) 288
Esp3I CGTCTC 1 cut(s) 275
FaeI CATG 3 cut(s) 217, 262, 614
FaiI YATR 9 cut(s) 77, 215, 260, 282, 494, 597, 612, 648, 650
FaqI GGGAC 2 cut(s) 596, 602
FatI CATG 3 cut(s) 213, 258, 610
FauNDI CATATG 1 cut(s) 648
Fnu4HI GCNGC 2 cut(s) 673, 676
FokI GGATG 1 cut(s) 238
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 2 cut(s) 673, 676
GluI GCNGC 2 cut(s) 673, 676
GsuI CTGGAG 1 cut(s) 195
HaeIII GGCC 3 cut(s) 54, 96, 694
HapII CCGG 3 cut(s) 98, 708, 752
HgaI GACGC 1 cut(s) 641
Hin1II CATG 3 cut(s) 217, 262, 614
HinfI GANTC 7 cut(s) 14, 125, 179, 425, 502, 615, 634
HpaII CCGG 3 cut(s) 98, 708, 752
HphI GGTGA 4 cut(s) 56, 177, 643, 766
Hpy188I TCNGA 6 cut(s) 61, 104, 139, 424, 430, 507
Hpy188III TCNNGA 2 cut(s) 360, 466
HpyAV CCTTC 1 cut(s) 669
HpyCH4IV ACGT 2 cut(s) 268, 622
HpyCH4V TGCA 3 cut(s) 9, 416, 675
HpyF10VI GCNNNNNNNGC 2 cut(s) 486, 601
HpyF3I CTNAG 2 cut(s) 136, 578
HpySE526I ACGT 2 cut(s) 268, 622
Hsp92II CATG 3 cut(s) 217, 262, 614
Kzo9I GATC 8 cut(s) 3, 46, 169, 216, 507, 548, 756, 785
LmnI GCTCC 5 cut(s) 291, 310, 408, 459, 754
Lsp1109I GCAGC 2 cut(s) 659, 687
MaeII ACGT 2 cut(s) 268, 622
MaeIII GTNAC 1 cut(s) 241
MalI GATC 8 cut(s) 5, 48, 171, 218, 509, 550, 758, 787
MbiI CCGCTC 1 cut(s) 411
MboI GATC 8 cut(s) 3, 46, 169, 216, 507, 548, 756, 785
MboII GAAGA 6 cut(s) 117, 221, 317, 511, 577, 738
MflI RGATCY 1 cut(s) 785
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 2 cut(s) 418, 538
MlyI GAGTC 3 cut(s) 23, 511, 624
MmeI TCCRAC 1 cut(s) 332
MroXI GAANNNNTTC 1 cut(s) 538
MseI TTAA 2 cut(s) 527, 588
MspA1I CMGCKG 2 cut(s) 28, 191
MspI CCGG 3 cut(s) 98, 708, 752
MspR9I CCNGG 3 cut(s) 98, 174, 627
MvaI CCWGG 2 cut(s) 174, 627
MwoI GCNNNNNNNGC 2 cut(s) 486, 601
NciI CCSGG 1 cut(s) 98
NdeI CATATG 1 cut(s) 648
NdeII GATC 8 cut(s) 3, 46, 169, 216, 507, 548, 756, 785
NlaIII CATG 3 cut(s) 217, 262, 614
NlaIV GGNNCC 1 cut(s) 787
NmeAIII GCCGAG 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 241
NspV TTCGAA 1 cut(s) 563
PaeR7I CTCGAG 1 cut(s) 384
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 538
PfeI GAWTC 4 cut(s) 125, 179, 425, 634
PfoI TCCNGGA 1 cut(s) 172
PkrI GCNGC 2 cut(s) 674, 677
PleI GAGTC 3 cut(s) 22, 510, 623
PpsI GAGTC 3 cut(s) 22, 510, 623
Psp124BI GAGCTC 1 cut(s) 288
Psp6I CCWGG 2 cut(s) 172, 625
PspGI CCWGG 2 cut(s) 172, 625
PspN4I GGNNCC 1 cut(s) 787
PspPI GGNCC 3 cut(s) 95, 100, 764
PspXI VCTCGAGB 1 cut(s) 384
PstI CTGCAG 1 cut(s) 677
PsuI RGATCY 1 cut(s) 785
PvuII CAGCTG 1 cut(s) 191
Rsr2I CGGWCCG 1 cut(s) 100
RsrII CGGWCCG 1 cut(s) 100
SacI GAGCTC 1 cut(s) 288
SaqAI TTAA 2 cut(s) 527, 588
SatI GCNGC 2 cut(s) 673, 676
Sau3AI GATC 8 cut(s) 3, 46, 169, 216, 507, 548, 756, 785
Sau96I GGNCC 3 cut(s) 95, 100, 764
SchI GAGTC 3 cut(s) 23, 511, 624
ScrFI CCNGG 3 cut(s) 98, 174, 627
SduI GDGCHC 1 cut(s) 288
SfcI CTRYAG 1 cut(s) 673
Sfr274I CTCGAG 1 cut(s) 384
SfuI TTCGAA 1 cut(s) 563
SinI GGWCC 2 cut(s) 100, 764
SlaI CTCGAG 1 cut(s) 384
SmlI CTYRAG 4 cut(s) 157, 358, 384, 475
SmoI CTYRAG 4 cut(s) 157, 358, 384, 475
Sse9I AATT 2 cut(s) 418, 538
SsiI CCGC 4 cut(s) 28, 206, 411, 723
SstI GAGCTC 1 cut(s) 288
StyD4I CCNGG 3 cut(s) 96, 172, 625
TaiI ACGT 2 cut(s) 271, 625
TaqI TCGA 3 cut(s) 144, 385, 563
TasI AATT 2 cut(s) 418, 538
TfiI GAWTC 4 cut(s) 125, 179, 425, 634
Tru1I TTAA 2 cut(s) 527, 588
Tru9I TTAA 2 cut(s) 527, 588
TscAI CASTG 1 cut(s) 558
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 2 cut(s) 672, 675
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 117
TspGWI ACGGA 2 cut(s) 26, 762
TspRI CASTG 1 cut(s) 558
VpaK11BI GGWCC 2 cut(s) 100, 764
XapI RAATTY 1 cut(s) 418
XcmI CCANNNNNNNNNTGG 1 cut(s) 550
XhoI CTCGAG 1 cut(s) 384
XmnI GAANNNNTTC 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.