Rh7DG076300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0010835
Physical Location & Seq
Forward (+)
5962681 .. 5963460
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG076300.1

Sequence Viewer

Length: 780 bp
ATGTGTTCGGAGACTAGTCCTCCTCGAATATCATTTTCTCATGATCTTGGCCAAGCAGATATGATACCCAGGAGGGATTCCTCGCTGCTGGACTTGAATGGTGATTTTGAGTTCAGCATTAGCAGAAGCTTCAGGCAAGATGAGCCTTCTTCAGCAGATGAGCTTTTCTCCCATGGAGTCATCAAACCTATACAACCGAGAGACAGGTCATCAGTTGAGGATGCACCAAAAGCCAGACACCTTTATTCTCTTCCTCCTCTTCAAGGTCAGAATCCAAAGAAAAAGACCACCAGCAAGGACAACAATGATAATTCACAGTTCATGGATGTGAATAGTCCTGAAGATGTGGACCAGCAAAACACGAAGCCTCAGTCCAAGTCCTTCTGGGGGTTCAAGAGAAGCAGCAGCCTTAATCAAGAGAACAGGAAGAGTCTACTTTGCTCATTACCAGAGTTTTTGAGAAGAAGCAATTCAACAGGGTCTGCCCCAAACCCAAAGAGGTCAACAATATACAAGGATGCTCATGCTCAACAGAAAAGGCAGTCCTCATCATCAGGTTTTATGTCAAAGTCATCATCAACATCCTCATCTTCATCTTCAAATCAATACCGAATGCTACCGAGGCCGCCGTCAAAGAAGGGTCATGGAGGAGCATCAAACTACGGCAATGGCGTTGTGTTAAATGTACCATCACCTCACATTTCTAGAGGAACTGCAAAGCTCTTTTGTTTGAGTTCTTTTCTATACCCTGAAGGAAAGGAGAAGAAGCAAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

259

Amino Acids

28.78

Weight (kDa)

9.79

Isoelectric Point (pI)

66.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010835)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48780 AT1G48780 AT3G18300 AT3G18300
fragaria_vesca FvH4_5g11870
malus_domestica MD06G1217800.v1.1 MD14G1228000.v1.1
prunus_persica Prupe.5G223000_v2.0.a1
pyrus_communis pycom06g19400 pycom14g18940
rosa_chinensis RchiOBHm_Chr7g0185721
rosa_laevigata RLG00000004889
rosa_multiflora Rmu_sc0002952.1_g000001
rosa_roxburghii Rroxscaffold_3G00268680
rosa_rugosa Rorug06G0470800
rosa_samantha Rh7AG071700 Rh7BG076300 Rh7CG076500 Rh7DG076300
rosa_wichuraiana Rw7G006350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 433
AciI CCGC 1 cut(s) 626
AcoI YGGCCR 1 cut(s) 49
AcuI CTGAAG 4 cut(s) 115, 135, 360, 771
AfaI GTAC 1 cut(s) 687
AfiI CCNNNNNNNGG 2 cut(s) 263, 387
AgsI TTSAA 5 cut(s) 97, 263, 394, 474, 600
AhlI ACTAGT 1 cut(s) 14
AjnI CCWGG 1 cut(s) 68
AluBI AGCT 3 cut(s) 129, 163, 721
AluI AGCT 3 cut(s) 129, 163, 721
Alw26I GTCTC 2 cut(s) 5, 195
AlwNI CAGNNNCTG 1 cut(s) 482
AoxI GGCC 2 cut(s) 49, 623
ApeKI GCWGC 3 cut(s) 85, 402, 405
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
Asp700I GAANNNNTTC 1 cut(s) 469
AspS9I GGNCC 1 cut(s) 349
AsuHPI GGTGA 2 cut(s) 113, 684
AvaII GGWCC 1 cut(s) 349
BalI TGGCCA 1 cut(s) 51
BbvI GCAGC 3 cut(s) 72, 414, 417
BccI CCATC 1 cut(s) 697
BceAI ACGGC 2 cut(s) 613, 679
BciT130I CCWGG 1 cut(s) 70
BcoDI GTCTC 2 cut(s) 5, 195
BcuI ACTAGT 1 cut(s) 14
BfaI CTAG 2 cut(s) 15, 705
BisI GCNGC 4 cut(s) 86, 403, 406, 626
BlsI GCNGC 4 cut(s) 87, 404, 407, 627
Bme1390I CCNGG 1 cut(s) 70
Bme18I GGWCC 1 cut(s) 349
BmgT120I GGNCC 1 cut(s) 349
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 3 cut(s) 211, 508, 662
BplI GAGNNNNNCTC 2 cut(s) 152, 184
BsaJI CCNNGG 3 cut(s) 68, 172, 620
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 387
Bse3DI GCAATG 1 cut(s) 673
BseBI CCWGG 1 cut(s) 70
BseDI CCNNGG 3 cut(s) 68, 172, 620
BseGI GGATG 4 cut(s) 226, 331, 523, 581
BseLI CCNNNNNNNGG 2 cut(s) 263, 387
BseMI GCAATG 1 cut(s) 673
BseMII CTCAG 1 cut(s) 383
BseRI GAGGAG 3 cut(s) 12, 246, 663
BseXI GCAGC 3 cut(s) 72, 414, 417
BshFI GGCC 2 cut(s) 51, 625
BslI CCNNNNNNNGG 2 cut(s) 263, 387
BsmAI GTCTC 2 cut(s) 5, 195
BsmI GAATGC 1 cut(s) 618
BsnI GGCC 2 cut(s) 51, 625
Bsp143I GATC 1 cut(s) 43
Bsp19I CCATGG 1 cut(s) 172
BspACI CCGC 1 cut(s) 626
BspANI GGCC 2 cut(s) 51, 625
BspCNI CTCAG 1 cut(s) 382
BspHI TCATGA 1 cut(s) 40
BsrDI GCAATG 1 cut(s) 673
BssECI CCNNGG 3 cut(s) 68, 172, 620
BssMI GATC 1 cut(s) 43
BssT1I CCWWGG 1 cut(s) 172
Bst2UI CCWGG 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 318
Bst6I CTCTTC 3 cut(s) 255, 264, 422
BstDEI CTNAG 1 cut(s) 369
BstDSI CCRYGG 1 cut(s) 172
BstENI CCTNNNNNAGG 1 cut(s) 261
BstF5I GGATG 4 cut(s) 226, 331, 523, 581
BstKTI GATC 1 cut(s) 46
BstMAI GTCTC 2 cut(s) 5, 195
BstMBI GATC 1 cut(s) 43
BstMWI GCNNNNNNNGC 3 cut(s) 142, 230, 622
BstNI CCWGG 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 68
BstV1I GCAGC 3 cut(s) 72, 414, 417
BsuRI GGCC 2 cut(s) 51, 625
BtgI CCRYGG 1 cut(s) 172
BtsCI GGATG 4 cut(s) 226, 331, 523, 581
CaiI CAGNNNCTG 1 cut(s) 482
CciI TCATGA 1 cut(s) 40
Cfr13I GGNCC 1 cut(s) 349
Csp6I GTAC 1 cut(s) 686
CviAII CATG 5 cut(s) 41, 173, 322, 524, 644
CviJI RGCY 9 cut(s) 51, 129, 145, 163, 233, 367, 408, 625, 721
CviKI_1 RGCY 9 cut(s) 51, 129, 145, 163, 233, 367, 408, 625, 721
CviQI GTAC 1 cut(s) 686
DdeI CTNAG 1 cut(s) 369
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
EaeI YGGCCR 1 cut(s) 49
Eam1104I CTCTTC 3 cut(s) 255, 264, 422
EarI CTCTTC 3 cut(s) 255, 264, 422
Eco130I CCWWGG 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 349
Eco57I CTGAAG 4 cut(s) 115, 135, 360, 771
EcoNI CCTNNNNNAGG 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 172
FaeI CATG 5 cut(s) 44, 176, 325, 527, 647
FatI CATG 5 cut(s) 40, 172, 321, 523, 643
FblI GTMKAC 1 cut(s) 433
Fnu4HI GCNGC 4 cut(s) 86, 403, 406, 626
FokI GGATG 4 cut(s) 233, 338, 530, 568
Fsp4HI GCNGC 4 cut(s) 86, 403, 406, 626
FspBI CTAG 2 cut(s) 15, 705
GluI GCNGC 4 cut(s) 86, 403, 406, 626
HaeIII GGCC 2 cut(s) 51, 625
Hin1II CATG 5 cut(s) 44, 176, 325, 527, 647
HincII GTYRAC 1 cut(s) 504
HindII GTYRAC 1 cut(s) 504
HindIII AAGCTT 1 cut(s) 127
HinfI GANTC 4 cut(s) 77, 177, 271, 430
HphI GGTGA 2 cut(s) 113, 684
Hpy166II GTNNAC 3 cut(s) 349, 434, 504
Hpy188I TCNGA 2 cut(s) 10, 270
Hpy188III TCNNGA 5 cut(s) 41, 338, 394, 416, 705
Hpy8I GTNNAC 3 cut(s) 349, 434, 504
HpyAV CCTTC 4 cut(s) 156, 391, 631, 746
HpyCH4III ACNGT 1 cut(s) 318
HpyCH4V TGCA 2 cut(s) 224, 716
HpyF10VI GCNNNNNNNGC 3 cut(s) 142, 230, 622
HpyF3I CTNAG 1 cut(s) 369
Hsp92II CATG 5 cut(s) 44, 176, 325, 527, 647
Kzo9I GATC 1 cut(s) 43
LmnI GCTCC 1 cut(s) 650
Lsp1109I GCAGC 3 cut(s) 72, 414, 417
LweI GCATC 3 cut(s) 211, 508, 662
MaeI CTAG 2 cut(s) 15, 705
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MboII GAAGA 9 cut(s) 141, 242, 251, 353, 439, 474, 582, 588, 775
MlsI TGGCCA 1 cut(s) 51
MluCI AATT 2 cut(s) 310, 469
MluNI TGGCCA 1 cut(s) 51
MlyI GAGTC 2 cut(s) 186, 439
Mox20I TGGCCA 1 cut(s) 51
MroXI GAANNNNTTC 1 cut(s) 469
MscI TGGCCA 1 cut(s) 51
MseI TTAA 2 cut(s) 411, 680
MslI CAYNNNNRTG 1 cut(s) 326
Msp20I TGGCCA 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 70
Mva1269I GAATGC 1 cut(s) 618
MvaI CCWGG 1 cut(s) 70
MwoI GCNNNNNNNGC 3 cut(s) 142, 230, 622
NcoI CCATGG 1 cut(s) 172
NdeII GATC 1 cut(s) 43
NlaIII CATG 5 cut(s) 44, 176, 325, 527, 647
PagI TCATGA 1 cut(s) 40
PcsI WCGNNNNNNNCGW 1 cut(s) 669
PctI GAATGC 1 cut(s) 618
PdmI GAANNNNTTC 1 cut(s) 469
PfeI GAWTC 2 cut(s) 77, 271
PkrI GCNGC 4 cut(s) 87, 404, 407, 627
PleI GAGTC 2 cut(s) 185, 438
PpsI GAGTC 2 cut(s) 185, 438
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
PspPI GGNCC 1 cut(s) 349
PstNI CAGNNNCTG 1 cut(s) 482
RsaI GTAC 1 cut(s) 687
RsaNI GTAC 1 cut(s) 686
RseI CAYNNNNRTG 1 cut(s) 326
SaqAI TTAA 2 cut(s) 411, 680
SatI GCNGC 4 cut(s) 86, 403, 406, 626
Sau3AI GATC 1 cut(s) 43
Sau96I GGNCC 1 cut(s) 349
SchI GAGTC 2 cut(s) 186, 439
ScrFI CCNGG 1 cut(s) 70
SfaNI GCATC 3 cut(s) 211, 508, 662
SinI GGWCC 1 cut(s) 349
SmiMI CAYNNNNRTG 1 cut(s) 326
SpeI ACTAGT 1 cut(s) 14
Sse9I AATT 2 cut(s) 310, 469
SsiI CCGC 1 cut(s) 626
SspMI CTAG 2 cut(s) 15, 705
StyD4I CCNGG 1 cut(s) 68
StyI CCWWGG 1 cut(s) 172
TaaI ACNGT 1 cut(s) 318
TaqI TCGA 1 cut(s) 25
TasI AATT 2 cut(s) 310, 469
TauI GCSGC 1 cut(s) 628
TfiI GAWTC 2 cut(s) 77, 271
Tru1I TTAA 2 cut(s) 411, 680
Tru9I TTAA 2 cut(s) 411, 680
TseI GCWGC 3 cut(s) 85, 402, 405
TspDTI ATGAA 2 cut(s) 310, 582
VpaK11BI GGWCC 1 cut(s) 349
XagI CCTNNNNNAGG 1 cut(s) 261
XbaI TCTAGA 1 cut(s) 704
XmiI GTMKAC 1 cut(s) 433
XmnI GAANNNNTTC 1 cut(s) 469
XspI CTAG 2 cut(s) 15, 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.