Rorug06G0470800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0010835
Physical Location & Seq
Reverse (-)
59405876 .. 59406667
792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0470800.1

Sequence Viewer

Length: 285 bp
ATGGGGCGGAGAGACAACCCGAAGGATGTGTATAAGGGTCCTGTTCCGTACACTAGGCAGCAGATCATAGATATTTTCAAAGGTTTTGACAAGAACGGAGACGGCAAGCTCTCCTGGGATGAGGTGAAGGCTGCGTTCGCTAAACTCGGGGCGCTTTTGCCCGACTACAGAGCTTGGCGAGGACGAAGGTGTGCCGATGCCGACAAGGATGGCTTCATCTCTCTCGAGACAGAGCTCAATGAACTTGTCACCTATACCCTGGAACTAGAGTATACACCGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.79

Weight (kDa)

6.25

Isoelectric Point (pI)

14.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 15 - 46 7.7e-06 EF-hand domain pair
EF-hand_1 PF00036 22 - 49 3.2e-07 EF hand domain
EF-hand_6 PF13405 22 - 50 9.8e-08 EF-hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010835)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48780 AT1G48780 AT3G18300 AT3G18300
fragaria_vesca FvH4_5g11870
malus_domestica MD06G1217800.v1.1 MD14G1228000.v1.1
prunus_persica Prupe.5G223000_v2.0.a1
pyrus_communis pycom06g19400 pycom14g18940
rosa_chinensis RchiOBHm_Chr7g0185721
rosa_laevigata RLG00000004889
rosa_multiflora Rmu_sc0002952.1_g000001
rosa_roxburghii Rroxscaffold_3G00268680
rosa_rugosa Rorug06G0470800
rosa_samantha Rh7AG071700 Rh7BG076300 Rh7CG076500 Rh7DG076300
rosa_wichuraiana Rw7G006350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 272
AciI CCGC 1 cut(s) 7
AfaI GTAC 1 cut(s) 50
AgsI TTSAA 1 cut(s) 79
AjnI CCWGG 2 cut(s) 113, 258
AluBI AGCT 3 cut(s) 109, 173, 235
AluI AGCT 3 cut(s) 109, 173, 235
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 3 cut(s) 6, 93, 221
Ama87I CYCGRG 2 cut(s) 146, 224
ApeKI GCWGC 2 cut(s) 58, 131
AspLEI GCGC 1 cut(s) 154
AspS9I GGNCC 1 cut(s) 38
AsuHPI GGTGA 2 cut(s) 136, 241
AvaI CYCGRG 2 cut(s) 146, 224
AvaII GGWCC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 2 cut(s) 70, 118
BccI CCATC 1 cut(s) 203
BceAI ACGGC 1 cut(s) 118
BciT130I CCWGG 2 cut(s) 115, 260
BcoDI GTCTC 3 cut(s) 6, 93, 221
BfaI CTAG 2 cut(s) 54, 266
BfmI CTRYAG 1 cut(s) 166
BfoI RGCGCY 1 cut(s) 155
BisI GCNGC 2 cut(s) 59, 132
BlsI GCNGC 2 cut(s) 60, 133
Bme1390I CCNGG 2 cut(s) 115, 260
Bme18I GGWCC 1 cut(s) 38
BmeT110I CYCGRG 2 cut(s) 146, 224
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 1 cut(s) 39
BmrFI CCNGG 2 cut(s) 115, 260
BmsI GCATC 1 cut(s) 187
BsaJI CCNNGG 2 cut(s) 114, 258
BseBI CCWGG 2 cut(s) 115, 260
BseDI CCNNGG 2 cut(s) 114, 258
BseGI GGATG 3 cut(s) 31, 124, 214
BseXI GCAGC 2 cut(s) 70, 118
BsiHKAI GWGCWC 1 cut(s) 237
BsiHKCI CYCGRG 2 cut(s) 146, 224
BsmAI GTCTC 3 cut(s) 6, 93, 221
BsmBI CGTCTC 1 cut(s) 93
BsoBI CYCGRG 2 cut(s) 146, 224
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 1 cut(s) 63
BspACI CCGC 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 39
BssECI CCNNGG 2 cut(s) 114, 258
BssMI GATC 1 cut(s) 63
BssNAI GTATAC 1 cut(s) 273
Bst1107I GTATAC 1 cut(s) 273
Bst2UI CCWGG 2 cut(s) 115, 260
BstC8I GCNNGC 1 cut(s) 107
BstF5I GGATG 3 cut(s) 31, 124, 214
BstH2I RGCGCY 1 cut(s) 155
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 1 cut(s) 66
BstMAI GTCTC 3 cut(s) 6, 93, 221
BstMBI GATC 1 cut(s) 63
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNI CCWGG 2 cut(s) 115, 260
BstSCI CCNGG 2 cut(s) 113, 258
BstSFI CTRYAG 1 cut(s) 166
BstV1I GCAGC 2 cut(s) 70, 118
BstZ17I GTATAC 1 cut(s) 273
BtsCI GGATG 3 cut(s) 31, 124, 214
Cac8I GCNNGC 1 cut(s) 107
CfoI GCGC 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 38
Csp6I GTAC 1 cut(s) 49
CviJI RGCY 5 cut(s) 109, 131, 173, 213, 235
CviKI_1 RGCY 5 cut(s) 109, 131, 173, 213, 235
CviQI GTAC 1 cut(s) 49
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
EciI GGCGGA 1 cut(s) 22
Ecl136II GAGCTC 1 cut(s) 235
Eco24I GRGCYC 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 38
Eco53kI GAGCTC 1 cut(s) 235
Eco88I CYCGRG 2 cut(s) 146, 224
EcoICRI GAGCTC 1 cut(s) 235
EcoO109I RGGNCCY 1 cut(s) 38
EcoRII CCWGG 2 cut(s) 113, 258
EcoT38I GRGCYC 1 cut(s) 237
Esp3I CGTCTC 1 cut(s) 93
FaiI YATR 4 cut(s) 33, 68, 255, 273
FalI AAGNNNNNCTT 2 cut(s) 197, 229
FblI GTMKAC 1 cut(s) 272
Fnu4HI GCNGC 2 cut(s) 59, 132
FokI GGATG 3 cut(s) 38, 131, 221
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 2 cut(s) 59, 132
FspBI CTAG 2 cut(s) 54, 266
GlaI GCGC 1 cut(s) 153
GluI GCNGC 2 cut(s) 59, 132
HaeII RGCGCY 1 cut(s) 155
HhaI GCGC 1 cut(s) 154
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HphI GGTGA 2 cut(s) 136, 241
Hpy166II GTNNAC 2 cut(s) 51, 273
Hpy188III TCNNGA 2 cut(s) 224, 226
Hpy8I GTNNAC 2 cut(s) 51, 273
HpyAV CCTTC 3 cut(s) 16, 121, 180
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HspAI GCGC 1 cut(s) 152
Kzo9I GATC 1 cut(s) 63
LpnPI CCDG 5 cut(s) 54, 100, 127, 245, 272
Lsp1109I GCAGC 2 cut(s) 70, 118
LweI GCATC 1 cut(s) 187
MaeI CTAG 2 cut(s) 54, 266
MaeIII GTNAC 1 cut(s) 247
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MhlI GDGCHC 1 cut(s) 237
MnlI CCTC 2 cut(s) 115, 173
MspR9I CCNGG 2 cut(s) 115, 260
MvaI CCWGG 2 cut(s) 115, 260
MwoI GCNNNNNNNGC 1 cut(s) 137
NdeII GATC 1 cut(s) 63
NlaIV GGNNCC 1 cut(s) 39
NmuCI GTSAC 1 cut(s) 247
PaeR7I CTCGAG 1 cut(s) 224
PkrI GCNGC 2 cut(s) 60, 133
PpuMI RGGWCCY 1 cut(s) 38
Psp124BI GAGCTC 1 cut(s) 237
Psp5II RGGWCCY 1 cut(s) 38
Psp6I CCWGG 2 cut(s) 113, 258
PspGI CCWGG 2 cut(s) 113, 258
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 1 cut(s) 38
PspPPI RGGWCCY 1 cut(s) 38
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SacI GAGCTC 1 cut(s) 237
SatI GCNGC 2 cut(s) 59, 132
Sau3AI GATC 1 cut(s) 63
Sau96I GGNCC 1 cut(s) 38
ScrFI CCNGG 2 cut(s) 115, 260
SduI GDGCHC 1 cut(s) 237
SetI ASST 7 cut(s) 85, 111, 126, 175, 191, 237, 254
SfaNI GCATC 1 cut(s) 187
SfcI CTRYAG 1 cut(s) 166
Sfr274I CTCGAG 1 cut(s) 224
SinI GGWCC 1 cut(s) 38
SlaI CTCGAG 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
SsiI CCGC 1 cut(s) 7
SspMI CTAG 2 cut(s) 54, 266
SstI GAGCTC 1 cut(s) 237
StyD4I CCNGG 2 cut(s) 113, 258
TaqI TCGA 1 cut(s) 225
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 2 cut(s) 58, 131
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 2 cut(s) 205, 255
TspGWI ACGGA 2 cut(s) 36, 111
VpaK11BI GGWCC 1 cut(s) 38
XhoI CTCGAG 1 cut(s) 224
XmiI GTMKAC 1 cut(s) 272
XspI CTAG 2 cut(s) 54, 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.