pycom14g18940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0010835
Physical Location & Seq
Forward (+)
20467375 .. 20468160
786 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g18940.1

Sequence Viewer

Length: 786 bp
ATGCTCCAACATATCCTCATCATGTGCTCAGAAGCCAGTCCTCCGAGATTATCGTTTTCCCAGGATCTTGGACAACCAGATGTTCTACCAGTTGGTCGGAGAGACACACCACTCTTGGACATGAACTGTGACTTTGAGTTCAGCTTCAGCAACAGCAGCTTCGAGCGTCAATCTTCCTCCGCCGACGAGCTCTTTTCGCACGGTGTGATCCTCCCTATGCAACCGAGAGATAGGGTTTCGAATAGCGAACTTAAACGTTATGCCTCTCTTCCTCCACTTCCAAGTTCTCCAACTTATGACAATCCAAATCCAAAGAAAGAGATCATGAACACGAAGGAAGTTATCGATTCGAGTTCGTTTCATTTTGAGCAGAAGCCTCAGTCGAAATCCTTCTGGGGATTCAAGAGAAGCACCAGCCTCAACCAAGAAAATAAGAAGAGCCTGCTTTGTTCATTGCAACTCTTGTCAAGAAGCAACTCAACCGGCTCAGCTCCGAATCCGAAGAAAGCGATTTTTAAGGATGTTCATAAACAAAAGCAGATGTCGAAGTCTGCATCATGTTCGTCATCTTCTTCTTCATCGTCGTCGTCGAATCCGTATGCAACGCTGCTGCCGAGGCCGCCGTCGAGGAAGGGTTACATAAACGGATCGTCTTATTACGGCAACGGTGTTCGAGTTAGTCCTGTGTTAAATGTACCATCTCCTTATATTTCTAAGGGAACTGCAAAGCTCTTTTGTTTGGGTTCTTTTTTACACCCCGGGAAAGATAAAAAGGGCAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

262

Amino Acids

28.82

Weight (kDa)

9.69

Isoelectric Point (pI)

65.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010835)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48780 AT1G48780 AT3G18300 AT3G18300
fragaria_vesca FvH4_5g11870
malus_domestica MD06G1217800.v1.1 MD14G1228000.v1.1
prunus_persica Prupe.5G223000_v2.0.a1
pyrus_communis pycom06g19400 pycom14g18940
rosa_chinensis RchiOBHm_Chr7g0185721
rosa_laevigata RLG00000004889
rosa_multiflora Rmu_sc0002952.1_g000001
rosa_roxburghii Rroxscaffold_3G00268680
rosa_rugosa Rorug06G0470800
rosa_samantha Rh7AG071700 Rh7BG076300 Rh7CG076500 Rh7DG076300
rosa_wichuraiana Rw7G006350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 180, 620
AclI AACGTT 1 cut(s) 256
AclWI GGATC 3 cut(s) 72, 202, 655
AcuI CTGAAG 1 cut(s) 130
AdeI CACNNNGTG 1 cut(s) 205
AfaI GTAC 1 cut(s) 696
AgsI TTSAA 1 cut(s) 403
AjnI CCWGG 1 cut(s) 60
AluBI AGCT 5 cut(s) 144, 159, 190, 491, 730
AluI AGCT 5 cut(s) 144, 159, 190, 491, 730
Alw21I GWGCWC 2 cut(s) 29, 192
Alw26I GTCTC 1 cut(s) 96
AlwI GGATC 3 cut(s) 72, 202, 655
Ama87I CYCGRG 1 cut(s) 758
AoxI GGCC 1 cut(s) 617
ApeKI GCWGC 3 cut(s) 156, 607, 610
Asp700I GAANNNNTTC 1 cut(s) 389
AsuC2I CCSGG 2 cut(s) 759, 760
AsuII TTCGAA 1 cut(s) 239
AvaI CYCGRG 1 cut(s) 758
BanII GRGCYC 1 cut(s) 192
Bbv12I GWGCWC 2 cut(s) 29, 192
BbvI GCAGC 3 cut(s) 168, 594, 597
BccI CCATC 1 cut(s) 706
BceAI ACGGC 2 cut(s) 607, 676
BcgI CGANNNNNNTGC 2 cut(s) 543, 577
BciT130I CCWGG 1 cut(s) 62
BcnI CCSGG 2 cut(s) 759, 760
BcoDI GTCTC 1 cut(s) 96
BisI GCNGC 4 cut(s) 157, 608, 611, 620
BlpI GCTNAGC 1 cut(s) 487
BlsI GCNGC 4 cut(s) 158, 609, 612, 621
Bme1390I CCNGG 3 cut(s) 62, 759, 760
BmeT110I CYCGRG 1 cut(s) 758
BmrFI CCNGG 3 cut(s) 62, 759, 760
BmsI GCATC 1 cut(s) 563
Bpu1102I GCTNAGC 1 cut(s) 487
Bpu14I TTCGAA 1 cut(s) 239
BpuMI CCSGG 2 cut(s) 759, 760
Bsa29I ATCGAT 1 cut(s) 345
BsaJI CCNNGG 4 cut(s) 60, 614, 757, 758
Bse118I RCCGGY 1 cut(s) 482
Bse1I ACTGG 2 cut(s) 36, 89
Bse3DI GCAATG 1 cut(s) 452
BseBI CCWGG 1 cut(s) 62
BseCI ATCGAT 1 cut(s) 345
BseDI CCNNGG 4 cut(s) 60, 614, 757, 758
BseGI GGATG 1 cut(s) 526
BseMI GCAATG 1 cut(s) 452
BseMII CTCAG 3 cut(s) 42, 392, 501
BseNI ACTGG 2 cut(s) 36, 89
BseXI GCAGC 3 cut(s) 168, 594, 597
BshFI GGCC 1 cut(s) 619
BshVI ATCGAT 1 cut(s) 345
BsiHKAI GWGCWC 2 cut(s) 29, 192
BsiHKCI CYCGRG 1 cut(s) 758
BsiSI CCGG 2 cut(s) 483, 759
BsmAI GTCTC 1 cut(s) 96
BsnI GGCC 1 cut(s) 619
BsoBI CYCGRG 1 cut(s) 758
Bsp119I TTCGAA 1 cut(s) 239
Bsp1286I GDGCHC 2 cut(s) 29, 192
Bsp143I GATC 4 cut(s) 64, 207, 321, 647
Bsp1720I GCTNAGC 1 cut(s) 487
BspACI CCGC 2 cut(s) 180, 620
BspANI GGCC 1 cut(s) 619
BspCNI CTCAG 3 cut(s) 41, 391, 500
BspDI ATCGAT 1 cut(s) 345
BspHI TCATGA 1 cut(s) 324
BspPI GGATC 3 cut(s) 72, 202, 655
BspQI GCTCTTC 1 cut(s) 431
BspT104I TTCGAA 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 452
BsrFI RCCGGY 1 cut(s) 482
BsrI ACTGG 2 cut(s) 36, 89
BssAI RCCGGY 1 cut(s) 482
BssECI CCNNGG 4 cut(s) 60, 614, 757, 758
BssMI GATC 4 cut(s) 64, 207, 321, 647
Bst2UI CCWGG 1 cut(s) 62
Bst4CI ACNGT 3 cut(s) 128, 203, 668
Bst6I CTCTTC 2 cut(s) 273, 431
BstBI TTCGAA 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 443
BstDEI CTNAG 4 cut(s) 28, 378, 487, 714
BstF5I GGATG 1 cut(s) 526
BstKTI GATC 4 cut(s) 67, 210, 324, 650
BstMAI GTCTC 1 cut(s) 96
BstMBI GATC 4 cut(s) 64, 207, 321, 647
BstMWI GCNNNNNNNGC 4 cut(s) 156, 196, 616, 619
BstNI CCWGG 1 cut(s) 62
BstSCI CCNGG 3 cut(s) 60, 757, 758
BstV1I GCAGC 3 cut(s) 168, 594, 597
BstX2I RGATCY 1 cut(s) 64
BstXI CCANNNNNNTGG 1 cut(s) 68
BstYI RGATCY 1 cut(s) 64
Bsu15I ATCGAT 1 cut(s) 345
BsuRI GGCC 1 cut(s) 619
BsuTUI ATCGAT 1 cut(s) 345
BtsCI GGATG 1 cut(s) 526
Cac8I GCNNGC 1 cut(s) 443
CciI TCATGA 1 cut(s) 324
Cfr10I RCCGGY 1 cut(s) 482
Cfr9I CCCGGG 1 cut(s) 758
ClaI ATCGAT 1 cut(s) 345
CseI GACGC 1 cut(s) 155
Csp6I GTAC 1 cut(s) 695
CviAII CATG 4 cut(s) 22, 121, 325, 558
CviQI GTAC 1 cut(s) 695
DdeI CTNAG 4 cut(s) 28, 378, 487, 714
DpnI GATC 4 cut(s) 66, 209, 323, 649
DpnII GATC 4 cut(s) 64, 207, 321, 647
DraIII CACNNNGTG 1 cut(s) 205
Eam1104I CTCTTC 2 cut(s) 273, 431
EarI CTCTTC 2 cut(s) 273, 431
EciI GGCGGA 1 cut(s) 169
Ecl136II GAGCTC 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 192
Eco53kI GAGCTC 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 130
Eco88I CYCGRG 1 cut(s) 758
EcoICRI GAGCTC 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 60
EcoT38I GRGCYC 1 cut(s) 192
FaeI CATG 4 cut(s) 25, 124, 328, 561
FatI CATG 4 cut(s) 21, 120, 324, 557
Fnu4HI GCNGC 4 cut(s) 157, 608, 611, 620
FokI GGATG 1 cut(s) 533
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 4 cut(s) 157, 608, 611, 620
GluI GCNGC 4 cut(s) 157, 608, 611, 620
HaeIII GGCC 1 cut(s) 619
HapII CCGG 2 cut(s) 483, 759
HgaI GACGC 1 cut(s) 155
Hin1II CATG 4 cut(s) 25, 124, 328, 561
HinfI GANTC 4 cut(s) 347, 399, 496, 592
HpaII CCGG 2 cut(s) 483, 759
Hpy188I TCNGA 5 cut(s) 31, 45, 99, 495, 501
Hpy188III TCNNGA 3 cut(s) 325, 403, 468
Hpy99I CGWCG 5 cut(s) 188, 586, 589, 592, 628
HpyAV CCTTC 3 cut(s) 328, 400, 625
HpyCH4III ACNGT 3 cut(s) 128, 203, 668
HpyCH4IV ACGT 1 cut(s) 256
HpyCH4V TGCA 5 cut(s) 220, 457, 554, 602, 725
HpyF10VI GCNNNNNNNGC 4 cut(s) 156, 196, 616, 619
HpyF3I CTNAG 4 cut(s) 28, 378, 487, 714
HpySE526I ACGT 1 cut(s) 256
Hsp92II CATG 4 cut(s) 25, 124, 328, 561
Kzo9I GATC 4 cut(s) 64, 207, 321, 647
LguI GCTCTTC 1 cut(s) 431
LmnI GCTCC 2 cut(s) 9, 496
Lsp1109I GCAGC 3 cut(s) 168, 594, 597
LweI GCATC 1 cut(s) 563
MaeII ACGT 1 cut(s) 256
MaeIII GTNAC 2 cut(s) 128, 635
MalI GATC 4 cut(s) 66, 209, 323, 649
MboI GATC 4 cut(s) 64, 207, 321, 647
MboII GAAGA 7 cut(s) 165, 260, 448, 514, 561, 564, 567
MflI RGATCY 1 cut(s) 64
MhlI GDGCHC 2 cut(s) 29, 192
MmeI TCCRAC 3 cut(s) 31, 77, 314
MroXI GAANNNNTTC 1 cut(s) 389
MseI TTAA 3 cut(s) 252, 516, 689
MspI CCGG 2 cut(s) 483, 759
MspR9I CCNGG 3 cut(s) 62, 759, 760
MvaI CCWGG 1 cut(s) 62
MwoI GCNNNNNNNGC 4 cut(s) 156, 196, 616, 619
NciI CCSGG 2 cut(s) 759, 760
NdeII GATC 4 cut(s) 64, 207, 321, 647
NlaIII CATG 4 cut(s) 25, 124, 328, 561
NmeAIII GCCGAG 1 cut(s) 639
NmuCI GTSAC 1 cut(s) 128
NspV TTCGAA 1 cut(s) 239
PagI TCATGA 1 cut(s) 324
PciSI GCTCTTC 1 cut(s) 431
PcsI WCGNNNNNNNCGW 3 cut(s) 587, 593, 611
PdmI GAANNNNTTC 1 cut(s) 389
PfeI GAWTC 4 cut(s) 347, 399, 496, 592
PkrI GCNGC 4 cut(s) 158, 609, 612, 621
Psp124BI GAGCTC 1 cut(s) 192
Psp1406I AACGTT 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 60
PsuI RGATCY 1 cut(s) 64
RsaI GTAC 1 cut(s) 696
RsaNI GTAC 1 cut(s) 695
SacI GAGCTC 1 cut(s) 192
SapI GCTCTTC 1 cut(s) 431
SaqAI TTAA 3 cut(s) 252, 516, 689
SatI GCNGC 4 cut(s) 157, 608, 611, 620
Sau3AI GATC 4 cut(s) 64, 207, 321, 647
ScrFI CCNGG 3 cut(s) 62, 759, 760
SduI GDGCHC 2 cut(s) 29, 192
SetI ASST 6 cut(s) 146, 161, 192, 259, 493, 732
SfaNI GCATC 1 cut(s) 563
SfuI TTCGAA 1 cut(s) 239
SmaI CCCGGG 1 cut(s) 760
SsiI CCGC 2 cut(s) 180, 620
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 3 cut(s) 60, 757, 758
TaaI ACNGT 3 cut(s) 128, 203, 668
TaiI ACGT 1 cut(s) 259
TaqI TCGA 9 cut(s) 162, 239, 345, 350, 383, 545, 590, 626, 673
TauI GCSGC 1 cut(s) 622
TfiI GAWTC 4 cut(s) 347, 399, 496, 592
Tru1I TTAA 3 cut(s) 252, 516, 689
Tru9I TTAA 3 cut(s) 252, 516, 689
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 3 cut(s) 156, 607, 610
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 6 cut(s) 137, 341, 350, 441, 515, 567
TspGWI ACGGA 2 cut(s) 585, 660
TspMI CCCGGG 1 cut(s) 758
XmaI CCCGGG 1 cut(s) 758
XmnI GAANNNNTTC 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.