MD06G1217800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0010835
Physical Location & Seq
Forward (+)
34987031 .. 34987810
780 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1217800.v1.1.491

Sequence Viewer

Length: 780 bp
ATGTGCTCAGAAACTAGTCCTCCCAGACTATCATTCTCCCATGATCTTATACAACCAGATGTTCTACCAGTTGGTCGGAGAGACACATCACTCTTGGACATGAACTGTGACTTTGAGTTCAGCTTCAGAAGAAGCAGCTTCGAGTGTCAGTCTTCCTCCGCCGACGAGCTGTTTTTGCACGGCGTAATCCTCCCTATGCAGCCGAAAGAAAAGGTTTCGAACAGCGAAGTCAAAAGTTATTCTTCTCCTGCTCCTCTTCCGAGTCATCTTCCAATCCATGACGATCATAATCCAAAGAAGAAGAGCAAGAACTCGAAGGAAGATATAGATTCGAGTTCCGATCATTTCGAGCAGAAGCCTCAGTCGAAATCCTTCTGGGGATTCAAGAGAAGCAGCAGCCTCAATCAAGAAAACAAAAAAAGTTTGTTTTGCTCATTGCAACTCTTGTCAAGAAGCAACTCAACCGGATCAGCTCCGAATCCGAAAAAAGCTATTTTTAAGGATGTTCATAAACAAAAACAGACGTCGAATATTTCAATGTTGAAGTCAGCATCATGTTCATCATCTTTTTCTTCATCGTCTTCGTTGAACCCGCATGCATCGCTGGTGCCGAGGCCGCCGTTGAGGAAGGGATACAATGGATCGTCTTATTACGGCAACGTGGTTCGAGTTAGTCCTGTGTTGAATGTACCATCTCCTTACATTTCTAAAGGAACTGCAAAGCTCTTTTGTTTGGGTTCTTTTTTACACCCCGGTAAAGATAAAAAGGGCAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

260

Amino Acids

28.66

Weight (kDa)

9.6

Isoelectric Point (pI)

63.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010835)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48780 AT1G48780 AT3G18300 AT3G18300
fragaria_vesca FvH4_5g11870
malus_domestica MD06G1217800.v1.1 MD14G1228000.v1.1
prunus_persica Prupe.5G223000_v2.0.a1
pyrus_communis pycom06g19400 pycom14g18940
rosa_chinensis RchiOBHm_Chr7g0185721
rosa_laevigata RLG00000004889
rosa_multiflora Rmu_sc0002952.1_g000001
rosa_roxburghii Rroxscaffold_3G00268680
rosa_rugosa Rorug06G0470800
rosa_samantha Rh7AG071700 Rh7BG076300 Rh7CG076500 Rh7DG076300
rosa_wichuraiana Rw7G006350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 527
AccB1I GGYRCC 1 cut(s) 607
AciI CCGC 3 cut(s) 159, 593, 617
AclWI GGATC 2 cut(s) 475, 649
AcuI CTGAAG 1 cut(s) 109
AcyI GRCGYC 1 cut(s) 524
AfaI GTAC 1 cut(s) 690
AgsI TTSAA 5 cut(s) 385, 537, 544, 589, 685
AhlI ACTAGT 1 cut(s) 14
AluBI AGCT 6 cut(s) 123, 138, 169, 473, 491, 724
AluI AGCT 6 cut(s) 123, 138, 169, 473, 491, 724
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 75
AlwI GGATC 2 cut(s) 475, 649
AoxI GGCC 1 cut(s) 614
ApeKI GCWGC 4 cut(s) 135, 199, 393, 396
Asp700I GAANNNNTTC 1 cut(s) 371
AsuC2I CCSGG 1 cut(s) 753
AsuII TTCGAA 1 cut(s) 218
BanI GGYRCC 1 cut(s) 607
BbsI GAAGAC 2 cut(s) 144, 573
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 4 cut(s) 147, 211, 405, 408
BccI CCATC 1 cut(s) 700
BceAI ACGGC 3 cut(s) 196, 604, 670
BciVI GTATCC 1 cut(s) 626
BcnI CCSGG 1 cut(s) 753
BcoDI GTCTC 1 cut(s) 75
BcuI ACTAGT 1 cut(s) 14
BfaI CTAG 1 cut(s) 15
BfuI GTATCC 1 cut(s) 626
BisI GCNGC 5 cut(s) 136, 200, 394, 397, 617
BlsI GCNGC 5 cut(s) 137, 201, 395, 398, 618
Bme1390I CCNGG 1 cut(s) 753
BmiI GGNNCC 1 cut(s) 609
BmrFI CCNGG 1 cut(s) 753
BmsI GCATC 2 cut(s) 560, 608
BpiI GAAGAC 2 cut(s) 144, 573
Bpu14I TTCGAA 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 753
BsaBI GATNNNNATC 1 cut(s) 288
BsaHI GRCGYC 1 cut(s) 524
BsaJI CCNNGG 2 cut(s) 611, 751
BsaWI WCCGGW 1 cut(s) 464
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 68
Bse3DI GCAATG 1 cut(s) 434
Bse8I GATNNNNATC 1 cut(s) 288
BseDI CCNNGG 2 cut(s) 611, 751
BseGI GGATG 1 cut(s) 508
BseJI GATNNNNATC 1 cut(s) 288
BseMI GCAATG 1 cut(s) 434
BseMII CTCAG 2 cut(s) 21, 374
BseNI ACTGG 1 cut(s) 68
BseRI GAGGAG 1 cut(s) 243
BseXI GCAGC 4 cut(s) 147, 211, 405, 408
BshFI GGCC 1 cut(s) 616
BshNI GGYRCC 1 cut(s) 607
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 2 cut(s) 465, 753
BsmAI GTCTC 1 cut(s) 75
BsnI GGCC 1 cut(s) 616
Bsp119I TTCGAA 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 5 cut(s) 43, 283, 340, 467, 641
BspACI CCGC 3 cut(s) 159, 593, 617
BspANI GGCC 1 cut(s) 616
BspCNI CTCAG 2 cut(s) 20, 373
BspLI GGNNCC 1 cut(s) 609
BspPI GGATC 2 cut(s) 475, 649
BspQI GCTCTTC 1 cut(s) 296
BspT104I TTCGAA 1 cut(s) 218
BspT107I GGYRCC 1 cut(s) 607
BsrDI GCAATG 1 cut(s) 434
BsrI ACTGG 1 cut(s) 68
BssECI CCNNGG 2 cut(s) 611, 751
BssMI GATC 5 cut(s) 43, 283, 340, 467, 641
BssNI GRCGYC 1 cut(s) 524
Bst4CI ACNGT 1 cut(s) 107
Bst6I CTCTTC 2 cut(s) 261, 296
BstACI GRCGYC 1 cut(s) 524
BstBI TTCGAA 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 597
BstDEI CTNAG 2 cut(s) 7, 360
BstF5I GGATG 1 cut(s) 508
BstKTI GATC 5 cut(s) 46, 286, 343, 470, 644
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 5 cut(s) 43, 283, 340, 467, 641
BstMWI GCNNNNNNNGC 3 cut(s) 175, 601, 616
BstNSI RCATGY 1 cut(s) 599
BstSCI CCNGG 1 cut(s) 751
BstV1I GCAGC 4 cut(s) 147, 211, 405, 408
BstV2I GAAGAC 2 cut(s) 144, 573
BsuI GTATCC 1 cut(s) 626
BsuRI GGCC 1 cut(s) 616
BtgZI GCGATG 1 cut(s) 585
BtsCI GGATG 1 cut(s) 508
Cac8I GCNNGC 1 cut(s) 597
Csp6I GTAC 1 cut(s) 689
CviAII CATG 5 cut(s) 41, 100, 278, 555, 596
CviQI GTAC 1 cut(s) 689
DdeI CTNAG 2 cut(s) 7, 360
DpnI GATC 5 cut(s) 45, 285, 342, 469, 643
DpnII GATC 5 cut(s) 43, 283, 340, 467, 641
Eam1104I CTCTTC 2 cut(s) 261, 296
EarI CTCTTC 2 cut(s) 261, 296
EciI GGCGGA 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 109
EcoT22I ATGCAT 1 cut(s) 601
FaeI CATG 5 cut(s) 44, 103, 281, 558, 599
FalI AAGNNNNNCTT 2 cut(s) 226, 258
FatI CATG 5 cut(s) 40, 99, 277, 554, 595
FauI CCCGC 1 cut(s) 600
Fnu4HI GCNGC 5 cut(s) 136, 200, 394, 397, 617
FokI GGATG 1 cut(s) 515
Fsp4HI GCNGC 5 cut(s) 136, 200, 394, 397, 617
FspBI CTAG 1 cut(s) 15
GluI GCNGC 5 cut(s) 136, 200, 394, 397, 617
HaeIII GGCC 1 cut(s) 616
HapII CCGG 2 cut(s) 465, 753
Hin1I GRCGYC 1 cut(s) 524
Hin1II CATG 5 cut(s) 44, 103, 281, 558, 599
HinfI GANTC 4 cut(s) 262, 329, 381, 478
HpaII CCGG 2 cut(s) 465, 753
Hpy188I TCNGA 7 cut(s) 10, 78, 128, 261, 340, 477, 483
Hpy188III TCNNGA 3 cut(s) 385, 407, 450
Hpy99I CGWCG 2 cut(s) 167, 529
HpyAV CCTTC 3 cut(s) 310, 382, 622
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4IV ACGT 2 cut(s) 524, 660
HpyCH4V TGCA 5 cut(s) 178, 199, 439, 599, 719
HpyF10VI GCNNNNNNNGC 3 cut(s) 175, 601, 616
HpyF3I CTNAG 2 cut(s) 7, 360
HpySE526I ACGT 2 cut(s) 524, 660
Hsp92I GRCGYC 1 cut(s) 524
Hsp92II CATG 5 cut(s) 44, 103, 281, 558, 599
Kzo9I GATC 5 cut(s) 43, 283, 340, 467, 641
LguI GCTCTTC 1 cut(s) 296
LmnI GCTCC 2 cut(s) 256, 478
LpnPI CCDG 9 cut(s) 37, 69, 81, 261, 361, 478, 590, 690, 766
Lsp1109I GCAGC 4 cut(s) 147, 211, 405, 408
LweI GCATC 2 cut(s) 560, 608
MaeI CTAG 1 cut(s) 15
MaeII ACGT 2 cut(s) 524, 660
MaeIII GTNAC 1 cut(s) 107
MalI GATC 5 cut(s) 45, 285, 342, 469, 643
MboI GATC 5 cut(s) 43, 283, 340, 467, 641
MhlI GDGCHC 1 cut(s) 8
MlyI GAGTC 1 cut(s) 271
MmeI TCCRAC 1 cut(s) 56
MnlI CCTC 8 cut(s) 30, 166, 200, 264, 369, 410, 606, 618
Mph1103I ATGCAT 1 cut(s) 601
MroXI GAANNNNTTC 1 cut(s) 371
MseI TTAA 1 cut(s) 498
MspI CCGG 2 cut(s) 465, 753
MspR9I CCNGG 1 cut(s) 753
MwoI GCNNNNNNNGC 3 cut(s) 175, 601, 616
NciI CCSGG 1 cut(s) 753
NdeII GATC 5 cut(s) 43, 283, 340, 467, 641
NlaIII CATG 5 cut(s) 44, 103, 281, 558, 599
NlaIV GGNNCC 1 cut(s) 609
NmeAIII GCCGAG 1 cut(s) 636
NmuCI GTSAC 1 cut(s) 107
NsiI ATGCAT 1 cut(s) 601
NspI RCATGY 1 cut(s) 599
NspV TTCGAA 1 cut(s) 218
PaeI GCATGC 1 cut(s) 599
PciSI GCTCTTC 1 cut(s) 296
PcsI WCGNNNNNNNCGW 1 cut(s) 608
PdmI GAANNNNTTC 1 cut(s) 371
PfeI GAWTC 3 cut(s) 329, 381, 478
PkrI GCNGC 5 cut(s) 137, 201, 395, 398, 618
PleI GAGTC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 609
RsaI GTAC 1 cut(s) 690
RsaNI GTAC 1 cut(s) 689
SapI GCTCTTC 1 cut(s) 296
SaqAI TTAA 1 cut(s) 498
SatI GCNGC 5 cut(s) 136, 200, 394, 397, 617
Sau3AI GATC 5 cut(s) 43, 283, 340, 467, 641
SchI GAGTC 1 cut(s) 271
ScrFI CCNGG 1 cut(s) 753
SduI GDGCHC 1 cut(s) 8
SetI ASST 9 cut(s) 125, 140, 171, 216, 475, 493, 527, 663, 726
SfaNI GCATC 2 cut(s) 560, 608
SfuI TTCGAA 1 cut(s) 218
SpeI ACTAGT 1 cut(s) 14
SphI GCATGC 1 cut(s) 599
SsiI CCGC 3 cut(s) 159, 593, 617
SspI AATATT 1 cut(s) 532
SspMI CTAG 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 751
TaaI ACNGT 1 cut(s) 107
TaiI ACGT 2 cut(s) 527, 663
TaqI TCGA 8 cut(s) 141, 218, 314, 332, 348, 365, 527, 667
TauI GCSGC 1 cut(s) 619
TfiI GAWTC 3 cut(s) 329, 381, 478
Tru1I TTAA 1 cut(s) 498
Tru9I TTAA 1 cut(s) 498
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 4 cut(s) 135, 199, 393, 396
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 4 cut(s) 116, 497, 549, 564
XceI RCATGY 1 cut(s) 599
XmnI GAANNNNTTC 1 cut(s) 371
XspI CTAG 1 cut(s) 15
ZraI GACGTC 1 cut(s) 525
Zsp2I ATGCAT 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.