Rh7BG076300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0010835
Physical Location & Seq
Forward (+)
5204681 .. 5205466
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG076300.1

Sequence Viewer

Length: 786 bp
ATGATGTGTTCGGAGACTAGTCCTCCTCGAATATCATTTTCTCATGATCTTGGCCAAGCAGATATGATACCCAGGAGGGATTCCTCGCTCCTGGACTTGAATGGTGATTTTGAGTTCAGCATTAGCAGAAGCTTCAGGCAAGATGAGCCTTCTTCAGCAGATGAGCTTTTCTCCCATGGAGTCATCAAACCTATGCAACCCAGAGACAGATCATCAGTTGAGGATGCACCAAAAGCCAGACACCTTTATTCTCTTCCTCCTCTTCAAGGTCATCAGAATCCAAAGAAAAAGACCACCAGCAAGGACAACAATGATAATTCACAGTTCATGGATGTGAATAGTCCTGAAGATGTGGACCAGCAAAACACAAAGCCTCAGTCCAAGTCCTTCTGGGGGTTCAAGAGAAGCAGCAGCCTTAATCAAGAGAACAGGAAGAGTCTACTTTGCTCATTACCAGAGTTTTTGAGAAGAAGCAATTCAACAGGGTCTGCCCCAAACCCAAAGAGGTCAACAATATACAAGGATGCTCATGCTCAACAGAAAAGGCAGTCCTCATCATCAGGTTTTATGTCAAAGTCATCATCAACATCCTCATCTTCATCTCCAAATCAATACCGAATGCTACCGAGGCCGCCATCAAAGAAGGGTCATGGAGGAGCATCAAACTACGGCAATGGCGTTGTGTTAAATGTACCATCACCTCACATTTCTAGAGGAACTGCAAAGCTCTTTTGTTTGACTTCTTTTCTGTATCCTGAAGGAAAGGAGAAGAAGCAAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

29.09

Weight (kDa)

9.79

Isoelectric Point (pI)

65.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010835)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48780 AT1G48780 AT3G18300 AT3G18300
fragaria_vesca FvH4_5g11870
malus_domestica MD06G1217800.v1.1 MD14G1228000.v1.1
prunus_persica Prupe.5G223000_v2.0.a1
pyrus_communis pycom06g19400 pycom14g18940
rosa_chinensis RchiOBHm_Chr7g0185721
rosa_laevigata RLG00000004889
rosa_multiflora Rmu_sc0002952.1_g000001
rosa_roxburghii Rroxscaffold_3G00268680
rosa_rugosa Rorug06G0470800
rosa_samantha Rh7AG071700 Rh7BG076300 Rh7CG076500 Rh7DG076300
rosa_wichuraiana Rw7G006350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 439
AciI CCGC 1 cut(s) 632
AcoI YGGCCR 1 cut(s) 52
AcuI CTGAAG 4 cut(s) 118, 138, 366, 777
AfaI GTAC 1 cut(s) 693
AfiI CCNNNNNNNGG 2 cut(s) 266, 393
AgsI TTSAA 4 cut(s) 100, 266, 400, 480
AhlI ACTAGT 1 cut(s) 17
AjnI CCWGG 2 cut(s) 71, 90
AluBI AGCT 3 cut(s) 132, 166, 727
AluI AGCT 3 cut(s) 132, 166, 727
Alw26I GTCTC 2 cut(s) 8, 198
AlwNI CAGNNNCTG 1 cut(s) 488
AoxI GGCC 2 cut(s) 52, 629
ApeKI GCWGC 2 cut(s) 408, 411
ArsI GACNNNNNNTTYG 2 cut(s) 362, 394
Asp700I GAANNNNTTC 1 cut(s) 475
AspS9I GGNCC 1 cut(s) 355
AsuHPI GGTGA 2 cut(s) 116, 690
AvaII GGWCC 1 cut(s) 355
BalI TGGCCA 1 cut(s) 54
BbvI GCAGC 2 cut(s) 420, 423
BccI CCATC 2 cut(s) 643, 703
BceAI ACGGC 1 cut(s) 685
BciT130I CCWGG 2 cut(s) 73, 92
BciVI GTATCC 1 cut(s) 762
BcoDI GTCTC 2 cut(s) 8, 198
BcuI ACTAGT 1 cut(s) 17
BfaI CTAG 2 cut(s) 18, 711
BfuI GTATCC 1 cut(s) 762
BisI GCNGC 3 cut(s) 409, 412, 632
BlsI GCNGC 3 cut(s) 410, 413, 633
Bme1390I CCNGG 2 cut(s) 73, 92
Bme18I GGWCC 1 cut(s) 355
BmgT120I GGNCC 1 cut(s) 355
BmrFI CCNGG 2 cut(s) 73, 92
BmsI GCATC 3 cut(s) 214, 514, 668
BplI GAGNNNNNCTC 2 cut(s) 155, 187
BsaJI CCNNGG 3 cut(s) 71, 175, 626
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 393
Bse3DI GCAATG 1 cut(s) 679
BseBI CCWGG 2 cut(s) 73, 92
BseDI CCNNGG 3 cut(s) 71, 175, 626
BseGI GGATG 4 cut(s) 229, 337, 529, 587
BseLI CCNNNNNNNGG 2 cut(s) 266, 393
BseMI GCAATG 1 cut(s) 679
BseMII CTCAG 1 cut(s) 389
BseRI GAGGAG 3 cut(s) 15, 249, 669
BseXI GCAGC 2 cut(s) 420, 423
BshFI GGCC 2 cut(s) 54, 631
BslI CCNNNNNNNGG 2 cut(s) 266, 393
BsmAI GTCTC 2 cut(s) 8, 198
BsmI GAATGC 1 cut(s) 624
BsnI GGCC 2 cut(s) 54, 631
Bsp143I GATC 2 cut(s) 46, 209
Bsp19I CCATGG 1 cut(s) 175
BspACI CCGC 1 cut(s) 632
BspANI GGCC 2 cut(s) 54, 631
BspCNI CTCAG 1 cut(s) 388
BspHI TCATGA 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 679
BssECI CCNNGG 3 cut(s) 71, 175, 626
BssMI GATC 2 cut(s) 46, 209
BssT1I CCWWGG 1 cut(s) 175
Bst2UI CCWGG 2 cut(s) 73, 92
Bst4CI ACNGT 1 cut(s) 324
Bst6I CTCTTC 3 cut(s) 258, 267, 428
BstDEI CTNAG 1 cut(s) 375
BstDSI CCRYGG 1 cut(s) 175
BstENI CCTNNNNNAGG 1 cut(s) 264
BstF5I GGATG 4 cut(s) 229, 337, 529, 587
BstKTI GATC 2 cut(s) 49, 212
BstMAI GTCTC 2 cut(s) 8, 198
BstMBI GATC 2 cut(s) 46, 209
BstMWI GCNNNNNNNGC 3 cut(s) 145, 233, 628
BstNI CCWGG 2 cut(s) 73, 92
BstSCI CCNGG 2 cut(s) 71, 90
BstV1I GCAGC 2 cut(s) 420, 423
BsuI GTATCC 1 cut(s) 762
BsuRI GGCC 2 cut(s) 54, 631
BtgI CCRYGG 1 cut(s) 175
BtsCI GGATG 4 cut(s) 229, 337, 529, 587
CaiI CAGNNNCTG 1 cut(s) 488
CciI TCATGA 1 cut(s) 43
Cfr13I GGNCC 1 cut(s) 355
Csp6I GTAC 1 cut(s) 692
CviAII CATG 5 cut(s) 44, 176, 328, 530, 650
CviJI RGCY 9 cut(s) 54, 132, 148, 166, 236, 373, 414, 631, 727
CviKI_1 RGCY 9 cut(s) 54, 132, 148, 166, 236, 373, 414, 631, 727
CviQI GTAC 1 cut(s) 692
DdeI CTNAG 1 cut(s) 375
DpnI GATC 2 cut(s) 48, 211
DpnII GATC 2 cut(s) 46, 209
EaeI YGGCCR 1 cut(s) 52
Eam1104I CTCTTC 3 cut(s) 258, 267, 428
EarI CTCTTC 3 cut(s) 258, 267, 428
Eco130I CCWWGG 1 cut(s) 175
Eco47I GGWCC 1 cut(s) 355
Eco57I CTGAAG 4 cut(s) 118, 138, 366, 777
EcoNI CCTNNNNNAGG 1 cut(s) 264
EcoRII CCWGG 2 cut(s) 71, 90
EcoT14I CCWWGG 1 cut(s) 175
ErhI CCWWGG 1 cut(s) 175
FaeI CATG 5 cut(s) 47, 179, 331, 533, 653
FaiI YATR 9 cut(s) 45, 65, 177, 194, 329, 517, 531, 569, 651
FatI CATG 5 cut(s) 43, 175, 327, 529, 649
FblI GTMKAC 1 cut(s) 439
Fnu4HI GCNGC 3 cut(s) 409, 412, 632
FokI GGATG 4 cut(s) 236, 344, 536, 574
Fsp4HI GCNGC 3 cut(s) 409, 412, 632
FspBI CTAG 2 cut(s) 18, 711
GluI GCNGC 3 cut(s) 409, 412, 632
HaeIII GGCC 2 cut(s) 54, 631
Hin1II CATG 5 cut(s) 47, 179, 331, 533, 653
HincII GTYRAC 1 cut(s) 510
HindII GTYRAC 1 cut(s) 510
HindIII AAGCTT 1 cut(s) 130
HinfI GANTC 4 cut(s) 80, 180, 277, 436
HphI GGTGA 2 cut(s) 116, 690
Hpy166II GTNNAC 3 cut(s) 355, 440, 510
Hpy188I TCNGA 2 cut(s) 13, 276
Hpy188III TCNNGA 6 cut(s) 44, 344, 400, 422, 711, 755
Hpy8I GTNNAC 3 cut(s) 355, 440, 510
HpyAV CCTTC 4 cut(s) 159, 397, 637, 752
HpyCH4III ACNGT 1 cut(s) 324
HpyCH4V TGCA 3 cut(s) 196, 227, 722
HpyF10VI GCNNNNNNNGC 3 cut(s) 145, 233, 628
HpyF3I CTNAG 1 cut(s) 375
Hsp92II CATG 5 cut(s) 47, 179, 331, 533, 653
Kzo9I GATC 2 cut(s) 46, 209
LmnI GCTCC 2 cut(s) 93, 656
Lsp1109I GCAGC 2 cut(s) 420, 423
LweI GCATC 3 cut(s) 214, 514, 668
MaeI CTAG 2 cut(s) 18, 711
MalI GATC 2 cut(s) 48, 211
MboI GATC 2 cut(s) 46, 209
MboII GAAGA 8 cut(s) 144, 245, 254, 359, 445, 480, 588, 781
MlsI TGGCCA 1 cut(s) 54
MluCI AATT 2 cut(s) 316, 475
MluNI TGGCCA 1 cut(s) 54
MlyI GAGTC 2 cut(s) 189, 445
Mox20I TGGCCA 1 cut(s) 54
MroXI GAANNNNTTC 1 cut(s) 475
MscI TGGCCA 1 cut(s) 54
MseI TTAA 2 cut(s) 417, 686
MslI CAYNNNNRTG 1 cut(s) 332
Msp20I TGGCCA 1 cut(s) 54
MspR9I CCNGG 2 cut(s) 73, 92
Mva1269I GAATGC 1 cut(s) 624
MvaI CCWGG 2 cut(s) 73, 92
MwoI GCNNNNNNNGC 3 cut(s) 145, 233, 628
NcoI CCATGG 1 cut(s) 175
NdeII GATC 2 cut(s) 46, 209
NlaIII CATG 5 cut(s) 47, 179, 331, 533, 653
PagI TCATGA 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 675
PctI GAATGC 1 cut(s) 624
PdmI GAANNNNTTC 1 cut(s) 475
PfeI GAWTC 2 cut(s) 80, 277
PfoI TCCNGGA 1 cut(s) 90
PkrI GCNGC 3 cut(s) 410, 413, 633
PleI GAGTC 2 cut(s) 188, 444
PpsI GAGTC 2 cut(s) 188, 444
Psp6I CCWGG 2 cut(s) 71, 90
PspGI CCWGG 2 cut(s) 71, 90
PspPI GGNCC 1 cut(s) 355
PstNI CAGNNNCTG 1 cut(s) 488
RsaI GTAC 1 cut(s) 693
RsaNI GTAC 1 cut(s) 692
RseI CAYNNNNRTG 1 cut(s) 332
SaqAI TTAA 2 cut(s) 417, 686
SatI GCNGC 3 cut(s) 409, 412, 632
Sau3AI GATC 2 cut(s) 46, 209
Sau96I GGNCC 1 cut(s) 355
SchI GAGTC 2 cut(s) 189, 445
ScrFI CCNGG 2 cut(s) 73, 92
SetI ASST 9 cut(s) 134, 168, 193, 246, 271, 509, 565, 703, 729
SfaNI GCATC 3 cut(s) 214, 514, 668
SinI GGWCC 1 cut(s) 355
SmiMI CAYNNNNRTG 1 cut(s) 332
SpeI ACTAGT 1 cut(s) 17
Sse9I AATT 2 cut(s) 316, 475
SsiI CCGC 1 cut(s) 632
SspMI CTAG 2 cut(s) 18, 711
StyD4I CCNGG 2 cut(s) 71, 90
StyI CCWWGG 1 cut(s) 175
TaaI ACNGT 1 cut(s) 324
TaqI TCGA 1 cut(s) 28
TasI AATT 2 cut(s) 316, 475
TauI GCSGC 1 cut(s) 634
TfiI GAWTC 2 cut(s) 80, 277
Tru1I TTAA 2 cut(s) 417, 686
Tru9I TTAA 2 cut(s) 417, 686
TseI GCWGC 2 cut(s) 408, 411
TspDTI ATGAA 2 cut(s) 316, 588
VpaK11BI GGWCC 1 cut(s) 355
XagI CCTNNNNNAGG 1 cut(s) 264
XbaI TCTAGA 1 cut(s) 710
XmiI GTMKAC 1 cut(s) 439
XmnI GAANNNNTTC 1 cut(s) 475
XspI CTAG 2 cut(s) 18, 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.