Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010332

Physical Location & Seq

Genomic Coordinates Reverse (-)

18123071 .. 18124289

Gene Structure 1219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G49000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGACCGATCAACGCCGGAACATAACTCATCTCCCTCACACAAGCGTCTAAGCGTGAGCTTTCTCGTCTCAATGATGGTTCTCTGCGCCAGGCATGCGAATCGGCTCTCGAAGAAACTAAAGCTGAAGTCAAAGAAGCGAACTTGCAGCGGCGGAGAGGGTGGAGGAGAAAGATTCCGATGGAATATGATAAGCTCGTCGATGAGTTCTCCTCGGCCAAAAGAGTTGTTCACGACTTTAAGCAACAAGGCGATGACCATGGTCCGCCGGAAAAACCCGCCGGAGGAAAAAGCAACCGCCATGGAGGAGGAGCATGGCCTTTGGCAGAGAGAGATATTGATGGGAGGCAAATGTGAGCCGTTGGATTTCTCGGGTGTGATATATTACGACTCTAACGGACGGCTATTAAACGAAGTGCCACCGAGATCACCACGTGGCACTCCATTACCCAGTTACCCGACCCGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.61

Weight (kDa)

10.07

Isoelectric Point (pI)

72.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49000 AT3G18560
fragaria_vesca	FvH4_5g12760
malus_domestica	MD06G1210500.v1.1 MD13G1047600.v1.1 MD14G1221200.v1.1
prunus_persica	Prupe.1G304400_v2.0.a1 Prupe.5G216600_v2.0.a1
pyrus_communis	pycom06g18800 pycom13g04190 pycom14g18300
rosa_chinensis	RchiOBHm_Chr7g0184511
rosa_laevigata	RLG00000004970
rosa_multiflora	Rmu_sc0001557.1_g000006 Rmu_sc0003710.1_g000008
rosa_roxburghii	Rroxscaffold_3G00269550
rosa_samantha	Rh7AG079500 Rh7BG067800 Rh7CG068200 Rh7DG067800
rosa_wichuraiana	Rw7G005580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	150, 153, 265, 278, 297
AcoI	YGGCCR	1 cut(s)	215
AcuI	CTGAAG	1 cut(s)	146
AcvI	CACGTG	1 cut(s)	434
AdeI	CACNNNGTG	1 cut(s)	434
AfiI	CCNNNNNNNGG	1 cut(s)	283
AjnI	CCWGG	1 cut(s)	89
AluBI	AGCT	3 cut(s)	60, 124, 195
AluI	AGCT	3 cut(s)	60, 124, 195
Alw26I	GTCTC	1 cut(s)	73
Ama87I	CYCGRG	1 cut(s)	370
AoxI	GGCC	2 cut(s)	215, 316
ApeKI	GCWGC	1 cut(s)	147
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	2 cut(s)	4, 262
AsuHPI	GGTGA	1 cut(s)	420
AvaI	CYCGRG	1 cut(s)	370
AvaII	GGWCC	2 cut(s)	4, 262
BbrPI	CACGTG	1 cut(s)	434
BbvI	GCAGC	1 cut(s)	159
BccI	CCATC	3 cut(s)	70, 174, 334
BceAI	ACGGC	2 cut(s)	343, 416
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BciT130I	CCWGG	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	73
BisI	GCNGC	2 cut(s)	148, 151
BlsI	GCNGC	2 cut(s)	149, 152
Bme1390I	CCNGG	1 cut(s)	91
Bme18I	GGWCC	2 cut(s)	4, 262
BmeT110I	CYCGRG	1 cut(s)	370
BmgT120I	GGNCC	2 cut(s)	4, 262
BmrFI	CCNGG	1 cut(s)	91
BmrI	ACTGGG	1 cut(s)	444
BmuI	ACTGGG	1 cut(s)	444
BoxI	GACNNNNGTC	1 cut(s)	260
BplI	GAGNNNNNCTC	2 cut(s)	196, 228
BsaAI	YACGTR	1 cut(s)	434
BsaJI	CCNNGG	3 cut(s)	212, 258, 300
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse1I	ACTGG	1 cut(s)	450
BseBI	CCWGG	1 cut(s)	91
BseDI	CCNNGG	3 cut(s)	212, 258, 300
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseNI	ACTGG	1 cut(s)	450
BseRI	GAGGAG	4 cut(s)	180, 201, 320, 323
BseXI	GCAGC	1 cut(s)	159
BshFI	GGCC	2 cut(s)	217, 318
BsiHKCI	CYCGRG	1 cut(s)	370
BsiSI	CCGG	3 cut(s)	17, 268, 281
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	1 cut(s)	73
BsmBI	CGTCTC	1 cut(s)	73
BsnI	GGCC	2 cut(s)	217, 318
BsoBI	CYCGRG	1 cut(s)	370
Bsp143I	GATC	2 cut(s)	8, 425
Bsp19I	CCATGG	2 cut(s)	258, 300
BspACI	CCGC	5 cut(s)	150, 153, 265, 278, 297
BspANI	GGCC	2 cut(s)	217, 318
BsrI	ACTGG	1 cut(s)	450
BssECI	CCNNGG	3 cut(s)	212, 258, 300
BssMI	GATC	2 cut(s)	8, 425
BssT1I	CCWWGG	2 cut(s)	258, 300
Bst2UI	CCWGG	1 cut(s)	91
BstBAI	YACGTR	1 cut(s)	434
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	1 cut(s)	50
BstDSI	CCRYGG	2 cut(s)	258, 300
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	2 cut(s)	11, 428
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	2 cut(s)	8, 425
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	91
BstNSI	RCATGY	1 cut(s)	98
BstPAI	GACNNNNGTC	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	89
BstV1I	GCAGC	1 cut(s)	159
BsuRI	GGCC	2 cut(s)	217, 318
BtgI	CCRYGG	2 cut(s)	258, 300
BtgZI	GCGATG	1 cut(s)	266
Cac8I	GCNNGC	1 cut(s)	96
CfoI	GCGC	1 cut(s)	89
Cfr13I	GGNCC	2 cut(s)	4, 262
CseI	GACGC	1 cut(s)	35
CviAII	CATG	4 cut(s)	95, 259, 301, 314
CviJI	RGCY	8 cut(s)	60, 106, 124, 195, 217, 318, 358, 403
CviKI_1	RGCY	8 cut(s)	60, 106, 124, 195, 217, 318, 358, 403
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	2 cut(s)	10, 427
DpnII	GATC	2 cut(s)	8, 425
DraIII	CACNNNGTG	1 cut(s)	434
EaeI	YGGCCR	1 cut(s)	215
EciI	GGCGGA	2 cut(s)	168, 254
Eco130I	CCWWGG	2 cut(s)	258, 300
Eco47I	GGWCC	2 cut(s)	4, 262
Eco57I	CTGAAG	1 cut(s)	146
Eco72I	CACGTG	1 cut(s)	434
Eco88I	CYCGRG	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	89
EcoT14I	CCWWGG	2 cut(s)	258, 300
ErhI	CCWWGG	2 cut(s)	258, 300
Esp3I	CGTCTC	1 cut(s)	73
FaeI	CATG	4 cut(s)	98, 262, 304, 317
FaiI	YATR	7 cut(s)	24, 96, 188, 260, 302, 315, 382
FatI	CATG	4 cut(s)	94, 258, 300, 313
FauI	CCCGC	1 cut(s)	285
Fnu4HI	GCNGC	2 cut(s)	148, 151
Fsp4HI	GCNGC	2 cut(s)	148, 151
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	2 cut(s)	148, 151
HaeIII	GGCC	2 cut(s)	217, 318
HapII	CCGG	3 cut(s)	17, 268, 281
HgaI	GACGC	1 cut(s)	35
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	4 cut(s)	98, 262, 304, 317
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HinfI	GANTC	3 cut(s)	100, 174, 389
HpaII	CCGG	3 cut(s)	17, 268, 281
HphI	GGTGA	1 cut(s)	420
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188I	TCNGA	1 cut(s)	179
Hpy188III	TCNNGA	2 cut(s)	109, 232
Hpy8I	GTNNAC	1 cut(s)	231
Hpy99I	CGWCG	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	433
HpyCH4V	TGCA	1 cut(s)	147
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	1 cut(s)	433
Hsp92II	CATG	4 cut(s)	98, 262, 304, 317
HspAI	GCGC	1 cut(s)	87
Kzo9I	GATC	2 cut(s)	8, 425
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	6 cut(s)	30, 76, 103, 281, 294, 463
Lsp1109I	GCAGC	1 cut(s)	159
MaeII	ACGT	1 cut(s)	433
MaeIII	GTNAC	1 cut(s)	452
MalI	GATC	2 cut(s)	10, 427
MboI	GATC	2 cut(s)	8, 425
MboII	GAAGA	1 cut(s)	124
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	8 cut(s)	46, 151, 158, 222, 277, 298, 301, 338
MseI	TTAA	3 cut(s)	239, 407, 469
MspA1I	CMGCKG	1 cut(s)	150
MspI	CCGG	3 cut(s)	17, 268, 281
MspR9I	CCNGG	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	91
MwoI	GCNNNNNNNGC	1 cut(s)	95
NcoI	CCATGG	2 cut(s)	258, 300
NdeII	GATC	2 cut(s)	8, 425
NlaIII	CATG	4 cut(s)	98, 262, 304, 317
NmeAIII	GCCGAG	1 cut(s)	193
NspI	RCATGY	1 cut(s)	98
PaeI	GCATGC	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	100, 174
PkrI	GCNGC	2 cut(s)	149, 152
PleI	GAGTC	1 cut(s)	383
PmaCI	CACGTG	1 cut(s)	434
PmlI	CACGTG	1 cut(s)	434
PpsI	GAGTC	1 cut(s)	383
Ppu21I	YACGTR	1 cut(s)	434
PshAI	GACNNNNGTC	1 cut(s)	260
Psp6I	CCWGG	1 cut(s)	89
PspCI	CACGTG	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	89
PspPI	GGNCC	2 cut(s)	4, 262
SaqAI	TTAA	3 cut(s)	239, 407, 469
SatI	GCNGC	2 cut(s)	148, 151
Sau3AI	GATC	2 cut(s)	8, 425
Sau96I	GGNCC	2 cut(s)	4, 262
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	1 cut(s)	91
SetI	ASST	4 cut(s)	62, 126, 197, 436
SinI	GGWCC	2 cut(s)	4, 262
SphI	GCATGC	1 cut(s)	98
SsiI	CCGC	5 cut(s)	150, 153, 265, 278, 297
StyD4I	CCNGG	1 cut(s)	89
StyI	CCWWGG	2 cut(s)	258, 300
TaiI	ACGT	1 cut(s)	436
TaqI	TCGA	2 cut(s)	110, 200
TaqII	GACCGA	1 cut(s)	21
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	2 cut(s)	100, 174
Tru1I	TTAA	3 cut(s)	239, 407, 469
Tru9I	TTAA	3 cut(s)	239, 407, 469
TseI	GCWGC	1 cut(s)	147
TspGWI	ACGGA	1 cut(s)	411
VpaK11BI	GGWCC	2 cut(s)	4, 262
XceI	RCATGY	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.