Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010332

Physical Location & Seq

Genomic Coordinates Forward (+)

6393747 .. 6394842

Gene Structure 1096 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G18560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGAGAGATCGACGCCGGAACATGTCTCCTCCGCACACAAGCGCATAAGCGTGAGCTTCCTCGTGTCTCTCATGGTACTTTGTGCTAGACACGCAAGCAGAGTTTCCAAGAAGCTTAAACCCAAGAAGACTCGGAAGCAAACTCATCTTGAAGACTATCTCGAAAGCCCTAAGTCTAACGGAAACGGTAGCGAAGACGGTAGAGGAGGAGGAAGGTTTGGATGGAGTCCGGCAAGGACTTTTTCTCCTATGAGGGTGCGTCCTAAGGAGCTCTACACGACCTTGAGCAACAAGGCGATGACTATGGTTGGCCGGAAAAACAAAGCTTACGACGGTGGTCCGACGAAGAAGACGGCGGTGGAGATGGTGATGGAGGAGGATGAGGAAGAGTACGGCGTTTGGCAGAGGGAGATTTTGATGGGAGGAAAATGTGAGCCGTTGGATTACTCAGGCGTGATCTACTACGATTGTAGTGGACATCAGCTAAAACAAGTGCCTCCAAGGTCTCCACGTGCCAGTTTGGTTCCGGAGCGCCCGACTCGTTCTTATGTCGGGTCATTGTTAAACCCGACGGGAAAGGAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

21.88

Weight (kDa)

9.63

Isoelectric Point (pI)

54.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49000 AT3G18560
fragaria_vesca	FvH4_5g12760
malus_domestica	MD06G1210500.v1.1 MD13G1047600.v1.1 MD14G1221200.v1.1
prunus_persica	Prupe.1G304400_v2.0.a1 Prupe.5G216600_v2.0.a1
pyrus_communis	pycom06g18800 pycom13g04190 pycom14g18300
rosa_chinensis	RchiOBHm_Chr7g0184511
rosa_laevigata	RLG00000004970
rosa_multiflora	Rmu_sc0001557.1_g000006 Rmu_sc0003710.1_g000008
rosa_roxburghii	Rroxscaffold_3G00269550
rosa_samantha	Rh7AG079500 Rh7BG067800 Rh7CG068200 Rh7DG067800
rosa_wichuraiana	Rw7G005580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	526
AciI	CCGC	2 cut(s)	33, 356
AcoI	YGGCCR	1 cut(s)	310
AcsI	RAATTY	1 cut(s)	582
AcvI	CACGTG	1 cut(s)	512
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	2 cut(s)	78, 392
AflIII	ACRYGT	1 cut(s)	22
AgsI	TTSAA	1 cut(s)	152
AluBI	AGCT	5 cut(s)	57, 115, 271, 326, 484
AluI	AGCT	5 cut(s)	57, 115, 271, 326, 484
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	3 cut(s)	31, 72, 510
Aor13HI	TCCGGA	1 cut(s)	526
AoxI	GGCC	1 cut(s)	310
ApoI	RAATTY	1 cut(s)	582
AspLEI	GCGC	2 cut(s)	45, 534
AspS9I	GGNCC	1 cut(s)	338
AsuHPI	GGTGA	1 cut(s)	379
AvaII	GGWCC	1 cut(s)	338
AxyI	CCTNAGG	1 cut(s)	264
BanII	GRGCYC	1 cut(s)	273
BauI	CACGAG	1 cut(s)	62
BbrPI	CACGTG	1 cut(s)	512
BbsI	GAAGAC	4 cut(s)	134, 159, 201, 356
Bbv12I	GWGCWC	1 cut(s)	273
BccI	CCATC	4 cut(s)	216, 358, 364, 412
BceAI	ACGGC	3 cut(s)	369, 409, 421
BcoDI	GTCTC	3 cut(s)	31, 72, 510
BfaI	CTAG	1 cut(s)	87
BfoI	RGCGCY	1 cut(s)	535
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	338
BmiI	GGNNCC	1 cut(s)	525
BoxI	GACNNNNGTC	1 cut(s)	336
BpiI	GAAGAC	4 cut(s)	134, 159, 201, 356
BpuEI	CTTGAG	1 cut(s)	304
BsaAI	YACGTR	1 cut(s)	512
BsaHI	GRCGYC	1 cut(s)	14
BsaI	GGTCTC	1 cut(s)	510
BsaJI	CCNNGG	1 cut(s)	500
BsaWI	WCCGGW	1 cut(s)	526
BsaXI	ACNNNNNCTCC	2 cut(s)	229, 259
Bse1I	ACTGG	1 cut(s)	516
Bse21I	CCTNAGG	1 cut(s)	264
BseAI	TCCGGA	1 cut(s)	526
BseDI	CCNNGG	1 cut(s)	500
BseGI	GGATG	2 cut(s)	227, 385
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	1 cut(s)	516
BseRI	GAGGAG	4 cut(s)	19, 219, 222, 389
BshFI	GGCC	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	273
BsiSI	CCGG	4 cut(s)	17, 230, 313, 527
BsmAI	GTCTC	3 cut(s)	31, 72, 510
BsnI	GGCC	1 cut(s)	312
Bso31I	GGTCTC	1 cut(s)	510
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp13I	TCCGGA	1 cut(s)	526
Bsp143I	GATC	2 cut(s)	8, 456
BspACI	CCGC	2 cut(s)	33, 356
BspANI	GGCC	1 cut(s)	312
BspCNI	CTCAG	1 cut(s)	461
BspEI	TCCGGA	1 cut(s)	526
BspLI	GGNNCC	1 cut(s)	525
BspTNI	GGTCTC	1 cut(s)	510
BsrI	ACTGG	1 cut(s)	516
BssECI	CCNNGG	1 cut(s)	500
BssMI	GATC	2 cut(s)	8, 456
BssNI	GRCGYC	1 cut(s)	14
BssSI	CACGAG	1 cut(s)	62
BssT1I	CCWWGG	1 cut(s)	500
Bst2BI	CACGAG	1 cut(s)	62
Bst4CI	ACNGT	3 cut(s)	188, 200, 335
Bst6I	CTCTTC	1 cut(s)	381
BstACI	GRCGYC	1 cut(s)	14
BstBAI	YACGTR	1 cut(s)	512
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	3 cut(s)	171, 264, 448
BstF5I	GGATG	2 cut(s)	227, 385
BstH2I	RGCGCY	1 cut(s)	535
BstHHI	GCGC	2 cut(s)	45, 534
BstKTI	GATC	2 cut(s)	11, 459
BstMAI	GTCTC	3 cut(s)	31, 72, 510
BstMBI	GATC	2 cut(s)	8, 456
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNSI	RCATGY	1 cut(s)	26
BstPAI	GACNNNNGTC	1 cut(s)	336
BstV2I	GAAGAC	4 cut(s)	134, 159, 201, 356
Bsu36I	CCTNAGG	1 cut(s)	264
BsuRI	GGCC	1 cut(s)	312
BtgZI	GCGATG	1 cut(s)	311
BtsCI	GGATG	2 cut(s)	227, 385
Cac8I	GCNNGC	1 cut(s)	97
CfoI	GCGC	2 cut(s)	45, 534
Cfr13I	GGNCC	1 cut(s)	338
CseI	GACGC	2 cut(s)	22, 248
Csp6I	GTAC	2 cut(s)	77, 391
CviAII	CATG	2 cut(s)	23, 73
CviJI	RGCY	8 cut(s)	57, 115, 168, 271, 312, 326, 436, 484
CviKI_1	RGCY	8 cut(s)	57, 115, 168, 271, 312, 326, 436, 484
CviQI	GTAC	2 cut(s)	77, 391
DdeI	CTNAG	3 cut(s)	171, 264, 448
DpnI	GATC	2 cut(s)	10, 458
DpnII	GATC	2 cut(s)	8, 456
EaeI	YGGCCR	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Ecl136II	GAGCTC	1 cut(s)	271
Eco130I	CCWWGG	1 cut(s)	500
Eco24I	GRGCYC	1 cut(s)	273
Eco31I	GGTCTC	1 cut(s)	510
Eco47I	GGWCC	1 cut(s)	338
Eco53kI	GAGCTC	1 cut(s)	271
Eco72I	CACGTG	1 cut(s)	512
Eco81I	CCTNAGG	1 cut(s)	264
EcoICRI	GAGCTC	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	500
EcoT38I	GRGCYC	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	500
FaeI	CATG	2 cut(s)	26, 76
FaiI	YATR	6 cut(s)	24, 47, 74, 251, 305, 549
FatI	CATG	2 cut(s)	22, 72
FokI	GGATG	2 cut(s)	234, 392
FriOI	GRGCYC	1 cut(s)	273
FspBI	CTAG	1 cut(s)	87
GlaI	GCGC	2 cut(s)	44, 533
HaeII	RGCGCY	1 cut(s)	535
HaeIII	GGCC	1 cut(s)	312
HapII	CCGG	4 cut(s)	17, 230, 313, 527
HgaI	GACGC	2 cut(s)	22, 248
HhaI	GCGC	2 cut(s)	45, 534
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	2 cut(s)	26, 76
Hin6I	GCGC	2 cut(s)	43, 532
HinP1I	GCGC	2 cut(s)	43, 532
HindIII	AAGCTT	2 cut(s)	113, 324
HinfI	GANTC	3 cut(s)	130, 226, 538
HpaII	CCGG	4 cut(s)	17, 230, 313, 527
HphI	GGTGA	1 cut(s)	379
Hpy166II	GTNNAC	1 cut(s)	476
Hpy188I	TCNGA	2 cut(s)	135, 342
Hpy188III	TCNNGA	3 cut(s)	149, 161, 527
Hpy8I	GTNNAC	1 cut(s)	476
Hpy99I	CGWCG	4 cut(s)	16, 335, 346, 574
HpyAV	CCTTC	1 cut(s)	207
HpyCH4III	ACNGT	3 cut(s)	188, 200, 335
HpyCH4IV	ACGT	1 cut(s)	511
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	3 cut(s)	171, 264, 448
HpySE526I	ACGT	1 cut(s)	511
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	2 cut(s)	26, 76
HspAI	GCGC	2 cut(s)	43, 532
Kpn2I	TCCGGA	1 cut(s)	526
Kzo9I	GATC	2 cut(s)	8, 456
LmnI	GCTCC	2 cut(s)	268, 529
LpnPI	CCDG	6 cut(s)	30, 243, 326, 435, 529, 540
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	1 cut(s)	511
MalI	GATC	2 cut(s)	10, 458
MboI	GATC	2 cut(s)	8, 456
MboII	GAAGA	6 cut(s)	139, 164, 206, 358, 361, 398
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	1 cut(s)	582
MlyI	GAGTC	3 cut(s)	124, 235, 532
MmeI	TCCRAC	2 cut(s)	365, 420
MroI	TCCGGA	1 cut(s)	526
MseI	TTAA	3 cut(s)	117, 563, 586
MslI	CAYNNNNRTG	1 cut(s)	50
MspI	CCGG	4 cut(s)	17, 230, 313, 527
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeII	GATC	2 cut(s)	8, 456
NlaIII	CATG	2 cut(s)	26, 76
NlaIV	GGNNCC	1 cut(s)	525
NspI	RCATGY	1 cut(s)	26
PciI	ACATGT	1 cut(s)	22
PleI	GAGTC	3 cut(s)	124, 234, 532
PmaCI	CACGTG	1 cut(s)	512
PmlI	CACGTG	1 cut(s)	512
PpsI	GAGTC	3 cut(s)	124, 234, 532
Ppu21I	YACGTR	1 cut(s)	512
PscI	ACATGT	1 cut(s)	22
PshAI	GACNNNNGTC	1 cut(s)	336
Psp124BI	GAGCTC	1 cut(s)	273
PspCI	CACGTG	1 cut(s)	512
PspN4I	GGNNCC	1 cut(s)	525
PspPI	GGNCC	1 cut(s)	338
RsaI	GTAC	2 cut(s)	78, 392
RsaNI	GTAC	2 cut(s)	77, 391
RseI	CAYNNNNRTG	1 cut(s)	50
SacI	GAGCTC	1 cut(s)	273
SaqAI	TTAA	3 cut(s)	117, 563, 586
Sau3AI	GATC	2 cut(s)	8, 456
Sau96I	GGNCC	1 cut(s)	338
SchI	GAGTC	3 cut(s)	124, 235, 532
SduI	GDGCHC	1 cut(s)	273
SetI	ASST	9 cut(s)	59, 117, 218, 273, 284, 328, 486, 506, 514
SinI	GGWCC	1 cut(s)	338
SmiMI	CAYNNNNRTG	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	283
SmoI	CTYRAG	1 cut(s)	283
Sse9I	AATT	1 cut(s)	582
SsiI	CCGC	2 cut(s)	33, 356
SspMI	CTAG	1 cut(s)	87
SstI	GAGCTC	1 cut(s)	273
StyI	CCWWGG	1 cut(s)	500
TaaI	ACNGT	3 cut(s)	188, 200, 335
TaiI	ACGT	1 cut(s)	514
TaqI	TCGA	2 cut(s)	11, 162
TasI	AATT	1 cut(s)	582
Tru1I	TTAA	3 cut(s)	117, 563, 586
Tru9I	TTAA	3 cut(s)	117, 563, 586
TspGWI	ACGGA	1 cut(s)	195
VpaK11BI	GGWCC	1 cut(s)	338
XapI	RAATTY	1 cut(s)	582
XceI	RCATGY	1 cut(s)	26
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.