Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0010332

Physical Location & Seq

Genomic Coordinates Reverse (-)

19987304 .. 19987792

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g18300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGTTCGTCATCTGCATGCAAGCGCCGATTCCGACTCGGACTCGTCGATGCGCCTGAAGTCCAAAGCCCGTATGCTGGTCTCCATCTCGGCACTCCTTGCCATCGGCCGCCGCCTCTCGGGGAAGCTGAAAGCCGCCAACTCCAAGCTGATAAAAAACAACCACCACTCGGATATCGCGCCGAATAAGTCGCCGATGATGAGAAAGCCCAAGCAGCTGATGTCGACCATAAGCAACAAGGCCATCACCTTCCTGCACCGGAAAAAGATCGGCGAGGAATCGGATGGTAGGGCCCACGCCGTGGAGGAGGAGTGGGGGGACGGTGGGGTATGGCAGAGGTCGATCCTGATGGGGGATAAGTGCGAGCCGTTGGATTTCTCAGGCGCAATTTACTACGATAGTAACGGGAAGAAACTTAACGGAGCTCCCCTCCGGTCCCCACGTGCAAGTCCGATGCCGGGGTACCTCGAAAGGGTCAACCGCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

17.94

Weight (kDa)

10.09

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49000 AT3G18560
fragaria_vesca	FvH4_5g12760
malus_domestica	MD06G1210500.v1.1 MD13G1047600.v1.1 MD14G1221200.v1.1
prunus_persica	Prupe.1G304400_v2.0.a1 Prupe.5G216600_v2.0.a1
pyrus_communis	pycom06g18800 pycom13g04190 pycom14g18300
rosa_chinensis	RchiOBHm_Chr7g0184511
rosa_laevigata	RLG00000004970
rosa_multiflora	Rmu_sc0001557.1_g000006 Rmu_sc0003710.1_g000008
rosa_roxburghii	Rroxscaffold_3G00269550
rosa_samantha	Rh7AG079500 Rh7BG067800 Rh7CG068200 Rh7DG067800
rosa_wichuraiana	Rw7G005580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	462
AccB1I	GGYRCC	1 cut(s)	462
AccB7I	CCANNNNNTGG	1 cut(s)	301
AccI	GTMKAC	1 cut(s)	224
AccII	CGCG	1 cut(s)	179
AciI	CCGC	4 cut(s)	109, 112, 135, 481
AclWI	GGATC	1 cut(s)	337
AcoI	YGGCCR	1 cut(s)	106
AcuI	CTGAAG	1 cut(s)	77
AcvI	CACGTG	1 cut(s)	443
AdeI	CACNNNGTG	1 cut(s)	301
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	7 cut(s)	76, 118, 169, 301, 352, 458, 472
AluBI	AGCT	4 cut(s)	127, 148, 217, 425
AluI	AGCT	4 cut(s)	127, 148, 217, 425
Alw21I	GWGCWC	1 cut(s)	427
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	1 cut(s)	337
Ama87I	CYCGRG	1 cut(s)	118
AoxI	GGCC	3 cut(s)	106, 240, 291
ApaI	GGGCCC	1 cut(s)	295
ApeKI	GCWGC	1 cut(s)	214
Asp718I	GGTACC	1 cut(s)	462
AspLEI	GCGC	4 cut(s)	26, 54, 181, 386
AspS9I	GGNCC	3 cut(s)	291, 292, 435
AsuC2I	CCSGG	1 cut(s)	459
AsuHPI	GGTGA	1 cut(s)	238
AvaI	CYCGRG	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	435
BaeGI	GKGCMC	1 cut(s)	295
BanI	GGYRCC	1 cut(s)	462
BanII	GRGCYC	2 cut(s)	295, 427
BbrPI	CACGTG	1 cut(s)	443
Bbv12I	GWGCWC	1 cut(s)	427
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	5 cut(s)	92, 110, 251, 278, 343
BceAI	ACGGC	2 cut(s)	284, 352
BcnI	CCSGG	1 cut(s)	459
BcoDI	GTCTC	1 cut(s)	85
BfoI	RGCGCY	1 cut(s)	27
BisI	GCNGC	4 cut(s)	109, 112, 135, 215
BlsI	GCNGC	4 cut(s)	110, 113, 136, 216
Bme1390I	CCNGG	1 cut(s)	459
Bme18I	GGWCC	1 cut(s)	435
BmeT110I	CYCGRG	1 cut(s)	118
BmgT120I	GGNCC	3 cut(s)	291, 292, 435
BmiI	GGNNCC	3 cut(s)	293, 437, 464
BmrFI	CCNGG	1 cut(s)	459
BmsI	GCATC	2 cut(s)	39, 444
BplI	GAGNNNNNCTC	2 cut(s)	414, 446
BpuMI	CCSGG	1 cut(s)	459
BsaAI	YACGTR	1 cut(s)	443
BsaI	GGTCTC	1 cut(s)	85
BsaJI	CCNNGG	2 cut(s)	300, 458
BsaWI	WCCGGW	2 cut(s)	258, 432
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	7 cut(s)	76, 118, 169, 301, 352, 458, 472
BseDI	CCNNGG	2 cut(s)	300, 458
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	7 cut(s)	76, 118, 169, 301, 352, 458, 472
BseMII	CTCAG	1 cut(s)	393
BseRI	GAGGAG	2 cut(s)	320, 323
BseSI	GKGCMC	1 cut(s)	295
BseX3I	CGGCCG	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	226
BsgI	GTGCAG	1 cut(s)	239
Bsh1236I	CGCG	1 cut(s)	179
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	3 cut(s)	108, 242, 293
BshNI	GGYRCC	1 cut(s)	462
BsiEI	CGRYCG	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	427
BsiHKCI	CYCGRG	1 cut(s)	118
BsiSI	CCGG	3 cut(s)	259, 433, 458
BslFI	GGGAC	2 cut(s)	332, 421
BslI	CCNNNNNNNGG	7 cut(s)	76, 118, 169, 301, 352, 458, 472
BsmAI	GTCTC	1 cut(s)	85
BsmFI	GGGAC	2 cut(s)	332, 421
BsnI	GGCC	3 cut(s)	108, 242, 293
Bso31I	GGTCTC	1 cut(s)	85
BsoBI	CYCGRG	1 cut(s)	118
Bsp120I	GGGCCC	1 cut(s)	291
Bsp1286I	GDGCHC	2 cut(s)	295, 427
Bsp143I	GATC	2 cut(s)	267, 342
BspACI	CCGC	4 cut(s)	109, 112, 135, 481
BspANI	GGCC	3 cut(s)	108, 242, 293
BspCNI	CTCAG	1 cut(s)	392
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	3 cut(s)	293, 437, 464
BspPI	GGATC	1 cut(s)	337
BspT107I	GGYRCC	1 cut(s)	462
BspTNI	GGTCTC	1 cut(s)	85
BssECI	CCNNGG	2 cut(s)	300, 458
BssMI	GATC	2 cut(s)	267, 342
Bst4CI	ACNGT	1 cut(s)	323
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstBAI	YACGTR	1 cut(s)	443
BstC8I	GCNNGC	3 cut(s)	18, 22, 365
BstDEI	CTNAG	1 cut(s)	379
BstDSI	CCRYGG	1 cut(s)	300
BstF5I	GGATG	1 cut(s)	289
BstFNI	CGCG	1 cut(s)	179
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	4 cut(s)	26, 54, 181, 386
BstKTI	GATC	2 cut(s)	270, 345
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	2 cut(s)	267, 342
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 214
BstNSI	RCATGY	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	457
BstSLI	GKGCMC	1 cut(s)	295
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	1 cut(s)	226
BstZI	CGGCCG	1 cut(s)	106
BsuRI	GGCC	3 cut(s)	108, 242, 293
BtgI	CCRYGG	1 cut(s)	300
BtsCI	GGATG	1 cut(s)	289
Cac8I	GCNNGC	3 cut(s)	18, 22, 365
CfoI	GCGC	4 cut(s)	26, 54, 181, 386
Cfr13I	GGNCC	3 cut(s)	291, 292, 435
Csp6I	GTAC	1 cut(s)	463
CviAII	CATG	1 cut(s)	17
CviQI	GTAC	1 cut(s)	463
DdeI	CTNAG	1 cut(s)	379
DpnI	GATC	2 cut(s)	269, 344
DpnII	GATC	2 cut(s)	267, 342
DraIII	CACNNNGTG	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	106
EagI	CGGCCG	1 cut(s)	106
Ecl136II	GAGCTC	1 cut(s)	425
EclXI	CGGCCG	1 cut(s)	106
Eco24I	GRGCYC	2 cut(s)	295, 427
Eco31I	GGTCTC	1 cut(s)	85
Eco32I	GATATC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	435
Eco52I	CGGCCG	1 cut(s)	106
Eco53kI	GAGCTC	1 cut(s)	425
Eco57I	CTGAAG	1 cut(s)	77
Eco72I	CACGTG	1 cut(s)	443
Eco88I	CYCGRG	1 cut(s)	118
EcoICRI	GAGCTC	1 cut(s)	425
EcoO109I	RGGNCCY	1 cut(s)	291
EcoRV	GATATC	1 cut(s)	175
EcoT38I	GRGCYC	2 cut(s)	295, 427
FaeI	CATG	1 cut(s)	20
FaiI	YATR	4 cut(s)	18, 74, 230, 331
FaqI	GGGAC	2 cut(s)	332, 421
FatI	CATG	1 cut(s)	16
FblI	GTMKAC	1 cut(s)	224
Fnu4HI	GCNGC	4 cut(s)	109, 112, 135, 215
FokI	GGATG	1 cut(s)	296
FriOI	GRGCYC	2 cut(s)	295, 427
Fsp4HI	GCNGC	4 cut(s)	109, 112, 135, 215
GlaI	GCGC	4 cut(s)	25, 53, 180, 385
GluI	GCNGC	4 cut(s)	109, 112, 135, 215
HaeII	RGCGCY	1 cut(s)	27
HaeIII	GGCC	3 cut(s)	108, 242, 293
HapII	CCGG	3 cut(s)	259, 433, 458
HhaI	GCGC	4 cut(s)	26, 54, 181, 386
Hin1II	CATG	1 cut(s)	20
Hin6I	GCGC	4 cut(s)	24, 52, 179, 384
HinP1I	GCGC	4 cut(s)	24, 52, 179, 384
HincII	GTYRAC	2 cut(s)	225, 478
HindII	GTYRAC	2 cut(s)	225, 478
HinfI	GANTC	4 cut(s)	29, 35, 41, 278
HpaII	CCGG	3 cut(s)	259, 433, 458
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	2 cut(s)	225, 478
Hpy188I	TCNGA	5 cut(s)	34, 40, 172, 283, 453
Hpy188III	TCNNGA	1 cut(s)	346
Hpy8I	GTNNAC	2 cut(s)	225, 478
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4IV	ACGT	1 cut(s)	442
HpyCH4V	TGCA	4 cut(s)	16, 20, 256, 446
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 214
HpyF3I	CTNAG	1 cut(s)	379
HpySE526I	ACGT	1 cut(s)	442
Hsp92II	CATG	1 cut(s)	20
HspAI	GCGC	4 cut(s)	24, 52, 179, 384
KpnI	GGTACC	1 cut(s)	466
Kzo9I	GATC	2 cut(s)	267, 342
LmnI	GCTCC	2 cut(s)	422, 430
LpnPI	CCDG	8 cut(s)	62, 68, 266, 272, 359, 366, 446, 471
Lsp1109I	GCAGC	1 cut(s)	226
LweI	GCATC	2 cut(s)	39, 444
MaeII	ACGT	1 cut(s)	442
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	2 cut(s)	269, 344
MboI	GATC	2 cut(s)	267, 342
MboII	GAAGA	1 cut(s)	421
MhlI	GDGCHC	2 cut(s)	295, 427
MluCI	AATT	1 cut(s)	387
MlyI	GAGTC	2 cut(s)	29, 35
MmeI	TCCRAC	2 cut(s)	57, 351
MnlI	CCTC	7 cut(s)	125, 268, 298, 301, 330, 440, 476
MseI	TTAA	1 cut(s)	417
MslI	CAYNNNNRTG	1 cut(s)	15
MspA1I	CMGCKG	1 cut(s)	217
MspI	CCGG	3 cut(s)	259, 433, 458
MspR9I	CCNGG	1 cut(s)	459
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	2 cut(s)	98, 214
NciI	CCSGG	1 cut(s)	459
NdeII	GATC	2 cut(s)	267, 342
NlaIII	CATG	1 cut(s)	20
NlaIV	GGNNCC	3 cut(s)	293, 437, 464
NmeAIII	GCCGAG	1 cut(s)	68
NspI	RCATGY	1 cut(s)	20
PaeI	GCATGC	1 cut(s)	20
PcsI	WCGNNNNNNNCGW	1 cut(s)	44
PfeI	GAWTC	2 cut(s)	29, 278
PflMI	CCANNNNNTGG	1 cut(s)	301
PkrI	GCNGC	4 cut(s)	110, 113, 136, 216
PleI	GAGTC	2 cut(s)	29, 35
PmaCI	CACGTG	1 cut(s)	443
PmlI	CACGTG	1 cut(s)	443
PpsI	GAGTC	2 cut(s)	29, 35
Ppu21I	YACGTR	1 cut(s)	443
Psp124BI	GAGCTC	1 cut(s)	427
PspCI	CACGTG	1 cut(s)	443
PspN4I	GGNNCC	3 cut(s)	293, 437, 464
PspOMI	GGGCCC	1 cut(s)	291
PspPI	GGNCC	3 cut(s)	291, 292, 435
PvuII	CAGCTG	1 cut(s)	217
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
RseI	CAYNNNNRTG	1 cut(s)	15
SacI	GAGCTC	1 cut(s)	427
SalI	GTCGAC	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	4 cut(s)	109, 112, 135, 215
Sau3AI	GATC	2 cut(s)	267, 342
Sau96I	GGNCC	3 cut(s)	291, 292, 435
SchI	GAGTC	2 cut(s)	29, 35
ScrFI	CCNGG	1 cut(s)	459
SduI	GDGCHC	2 cut(s)	295, 427
SetI	ASST	8 cut(s)	129, 150, 219, 251, 341, 427, 445, 468
SfaNI	GCATC	2 cut(s)	39, 444
SinI	GGWCC	1 cut(s)	435
SmiMI	CAYNNNNRTG	1 cut(s)	15
SphI	GCATGC	1 cut(s)	20
Sse9I	AATT	1 cut(s)	387
SsiI	CCGC	4 cut(s)	109, 112, 135, 481
SstI	GAGCTC	1 cut(s)	427
StyD4I	CCNGG	1 cut(s)	457
TaaI	ACNGT	1 cut(s)	323
TaiI	ACGT	1 cut(s)	445
TaqI	TCGA	4 cut(s)	47, 224, 341, 468
TasI	AATT	1 cut(s)	387
TauI	GCSGC	3 cut(s)	111, 114, 137
TfiI	GAWTC	2 cut(s)	29, 278
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TseI	GCWGC	1 cut(s)	214
TspGWI	ACGGA	1 cut(s)	435
Van91I	CCANNNNNTGG	1 cut(s)	301
VpaK11BI	GGWCC	1 cut(s)	435
XceI	RCATGY	1 cut(s)	20
XmiI	GTMKAC	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.