Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0010332

Physical Location & Seq

Genomic Coordinates Reverse (-)

22387904 .. 22388401

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g18800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCTCGTCATCTGCATACAAGCGAATATTCTGACTCGGACTCCTCGATGCGCTTGAAGTCCAAAGCCCGTATGGTGGCCTCCGTCTCGGCATTCCTCGCCATCGCCCGACGCCTCTCGGGAAAACTGAAGGCCGCCAACTCCAACATGATAAAAAACAACCACCAGTCAAAAGTCGCGCCGAATAAGTCACCGATGATGAGGAAGCCGAAGCAGCTAATGTCGACCATAAGCAACAAGGCCATCACGTTCCTGCACCGGAAAAAGATCGGCGAGGAATCGGACAGTAGGGGCCGCCTCCACGCGGAGGAGGAGGAGGAGTGGGGGGACGGTGGGGTATGGCAGAGGTCGATCCTGATGGGGGATAAGTGCGAGCCGTTGGCTTTCTCGGGCGTAATTTATTACGATATTGACGGGAAGAAACTTAACGGAGCTCCCATAAGGTCCCCACGTGCAAGTCCGATGCCGGGGTACCTCGAGAGGGGTAAGAGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

18.46

Weight (kDa)

10.08

Isoelectric Point (pI)

56.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49000 AT3G18560
fragaria_vesca	FvH4_5g12760
malus_domestica	MD06G1210500.v1.1 MD13G1047600.v1.1 MD14G1221200.v1.1
prunus_persica	Prupe.1G304400_v2.0.a1 Prupe.5G216600_v2.0.a1
pyrus_communis	pycom06g18800 pycom13g04190 pycom14g18300
rosa_chinensis	RchiOBHm_Chr7g0184511
rosa_laevigata	RLG00000004970
rosa_multiflora	Rmu_sc0001557.1_g000006 Rmu_sc0003710.1_g000008
rosa_roxburghii	Rroxscaffold_3G00269550
rosa_samantha	Rh7AG079500 Rh7BG067800 Rh7CG068200 Rh7DG067800
rosa_wichuraiana	Rw7G005580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	471
AccB1I	GGYRCC	1 cut(s)	471
AccI	GTMKAC	1 cut(s)	224
AccII	CGCG	2 cut(s)	179, 305
AciI	CCGC	3 cut(s)	135, 295, 305
AclWI	GGATC	1 cut(s)	346
AcuI	CTGAAG	1 cut(s)	149
AcvI	CACGTG	1 cut(s)	452
AcyI	GRCGYC	1 cut(s)	112
AfaI	GTAC	1 cut(s)	473
AfiI	CCNNNNNNNGG	6 cut(s)	76, 304, 307, 361, 467, 481
AgsI	TTSAA	1 cut(s)	58
AluBI	AGCT	2 cut(s)	217, 434
AluI	AGCT	2 cut(s)	217, 434
Alw21I	GWGCWC	1 cut(s)	436
Alw26I	GTCTC	1 cut(s)	91
AlwI	GGATC	1 cut(s)	346
Ama87I	CYCGRG	3 cut(s)	118, 388, 476
AoxI	GGCC	4 cut(s)	78, 132, 240, 292
ApeKI	GCWGC	1 cut(s)	214
Asp718I	GGTACC	1 cut(s)	471
AspLEI	GCGC	2 cut(s)	54, 181
AspS9I	GGNCC	2 cut(s)	292, 444
AsuC2I	CCSGG	1 cut(s)	468
AsuHPI	GGTGA	1 cut(s)	183
AvaI	CYCGRG	3 cut(s)	118, 388, 476
AvaII	GGWCC	1 cut(s)	444
BanI	GGYRCC	1 cut(s)	471
BanII	GRGCYC	1 cut(s)	436
BbrPI	CACGTG	1 cut(s)	452
Bbv12I	GWGCWC	1 cut(s)	436
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	3 cut(s)	110, 251, 352
BceAI	ACGGC	1 cut(s)	361
BcnI	CCSGG	1 cut(s)	468
BcoDI	GTCTC	1 cut(s)	91
BisI	GCNGC	3 cut(s)	135, 215, 295
BlsI	GCNGC	3 cut(s)	136, 216, 296
Bme1390I	CCNGG	1 cut(s)	468
Bme18I	GGWCC	1 cut(s)	444
BmeT110I	CYCGRG	3 cut(s)	118, 388, 476
BmgT120I	GGNCC	2 cut(s)	292, 444
BmiI	GGNNCC	3 cut(s)	293, 446, 473
BmrFI	CCNGG	1 cut(s)	468
BmsI	GCATC	2 cut(s)	39, 453
BpuMI	CCSGG	1 cut(s)	468
BsaAI	YACGTR	1 cut(s)	452
BsaHI	GRCGYC	1 cut(s)	112
BsaJI	CCNNGG	1 cut(s)	467
BsaWI	WCCGGW	1 cut(s)	258
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 56, 305, 335
Bsc4I	CCNNNNNNNGG	6 cut(s)	76, 304, 307, 361, 467, 481
Bse1I	ACTGG	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	467
BseLI	CCNNNNNNNGG	6 cut(s)	76, 304, 307, 361, 467, 481
BseNI	ACTGG	1 cut(s)	166
BseRI	GAGGAG	5 cut(s)	34, 323, 326, 329, 332
BseXI	GCAGC	1 cut(s)	226
BsgI	GTGCAG	1 cut(s)	239
Bsh1236I	CGCG	2 cut(s)	179, 305
BshFI	GGCC	4 cut(s)	80, 134, 242, 294
BshNI	GGYRCC	1 cut(s)	471
BsiHKAI	GWGCWC	1 cut(s)	436
BsiHKCI	CYCGRG	3 cut(s)	118, 388, 476
BsiSI	CCGG	2 cut(s)	259, 467
BslFI	GGGAC	2 cut(s)	341, 430
BslI	CCNNNNNNNGG	6 cut(s)	76, 304, 307, 361, 467, 481
BsmAI	GTCTC	1 cut(s)	91
BsmBI	CGTCTC	1 cut(s)	91
BsmFI	GGGAC	2 cut(s)	341, 430
BsmI	GAATGC	1 cut(s)	92
BsnI	GGCC	4 cut(s)	80, 134, 242, 294
BsoBI	CYCGRG	3 cut(s)	118, 388, 476
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp143I	GATC	2 cut(s)	267, 351
BspACI	CCGC	3 cut(s)	135, 295, 305
BspANI	GGCC	4 cut(s)	80, 134, 242, 294
BspFNI	CGCG	2 cut(s)	179, 305
BspLI	GGNNCC	3 cut(s)	293, 446, 473
BspPI	GGATC	1 cut(s)	346
BspT107I	GGYRCC	1 cut(s)	471
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	467
BssMI	GATC	2 cut(s)	267, 351
BssNI	GRCGYC	1 cut(s)	112
Bst4CI	ACNGT	2 cut(s)	287, 332
BstACI	GRCGYC	1 cut(s)	112
BstBAI	YACGTR	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	374
BstFNI	CGCG	2 cut(s)	179, 305
BstHHI	GCGC	2 cut(s)	54, 181
BstKTI	GATC	2 cut(s)	270, 354
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	2 cut(s)	267, 351
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 214
BstSCI	CCNGG	1 cut(s)	466
BstUI	CGCG	2 cut(s)	179, 305
BstV1I	GCAGC	1 cut(s)	226
BsuRI	GGCC	4 cut(s)	80, 134, 242, 294
BtgZI	GCGATG	1 cut(s)	88
Cac8I	GCNNGC	1 cut(s)	374
CfoI	GCGC	2 cut(s)	54, 181
Cfr13I	GGNCC	2 cut(s)	292, 444
CseI	GACGC	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	472
CviAII	CATG	1 cut(s)	148
CviQI	GTAC	1 cut(s)	472
DpnI	GATC	2 cut(s)	269, 353
DpnII	GATC	2 cut(s)	267, 351
Ecl136II	GAGCTC	1 cut(s)	434
Eco24I	GRGCYC	1 cut(s)	436
Eco47I	GGWCC	1 cut(s)	444
Eco53kI	GAGCTC	1 cut(s)	434
Eco57I	CTGAAG	1 cut(s)	149
Eco72I	CACGTG	1 cut(s)	452
Eco88I	CYCGRG	3 cut(s)	118, 388, 476
EcoICRI	GAGCTC	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	444
EcoT38I	GRGCYC	1 cut(s)	436
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	1 cut(s)	151
FaiI	YATR	6 cut(s)	18, 74, 149, 230, 340, 440
FaqI	GGGAC	2 cut(s)	341, 430
FatI	CATG	1 cut(s)	147
FblI	GTMKAC	1 cut(s)	224
Fnu4HI	GCNGC	3 cut(s)	135, 215, 295
FriOI	GRGCYC	1 cut(s)	436
Fsp4HI	GCNGC	3 cut(s)	135, 215, 295
GlaI	GCGC	2 cut(s)	53, 180
GluI	GCNGC	3 cut(s)	135, 215, 295
HaeIII	GGCC	4 cut(s)	80, 134, 242, 294
HapII	CCGG	2 cut(s)	259, 467
HgaI	GACGC	1 cut(s)	120
HhaI	GCGC	2 cut(s)	54, 181
Hin1I	GRCGYC	1 cut(s)	112
Hin1II	CATG	1 cut(s)	151
Hin6I	GCGC	2 cut(s)	52, 179
HinP1I	GCGC	2 cut(s)	52, 179
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HinfI	GANTC	3 cut(s)	35, 41, 278
HpaII	CCGG	2 cut(s)	259, 467
HphI	GGTGA	1 cut(s)	183
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	4 cut(s)	34, 40, 283, 462
Hpy188III	TCNNGA	3 cut(s)	120, 355, 478
Hpy8I	GTNNAC	1 cut(s)	225
Hpy99I	CGWCG	1 cut(s)	114
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	2 cut(s)	287, 332
HpyCH4IV	ACGT	2 cut(s)	248, 451
HpyCH4V	TGCA	3 cut(s)	16, 256, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 214
HpySE526I	ACGT	2 cut(s)	248, 451
Hsp92I	GRCGYC	1 cut(s)	112
Hsp92II	CATG	1 cut(s)	151
HspAI	GCGC	2 cut(s)	52, 179
KpnI	GGTACC	1 cut(s)	475
Kzo9I	GATC	2 cut(s)	267, 351
LmnI	GCTCC	2 cut(s)	431, 439
LpnPI	CCDG	5 cut(s)	179, 266, 272, 368, 480
Lsp1109I	GCAGC	1 cut(s)	226
LweI	GCATC	2 cut(s)	39, 453
MaeII	ACGT	2 cut(s)	248, 451
MaeIII	GTNAC	1 cut(s)	189
MalI	GATC	2 cut(s)	269, 353
MboI	GATC	2 cut(s)	267, 351
MboII	GAAGA	1 cut(s)	430
MhlI	GDGCHC	1 cut(s)	436
MluCI	AATT	1 cut(s)	396
MlyI	GAGTC	2 cut(s)	29, 35
MmeI	TCCRAC	1 cut(s)	168
MseI	TTAA	1 cut(s)	426
MspI	CCGG	2 cut(s)	259, 467
MspR9I	CCNGG	1 cut(s)	468
Mva1269I	GAATGC	1 cut(s)	92
MvnI	CGCG	2 cut(s)	179, 305
MwoI	GCNNNNNNNGC	2 cut(s)	98, 214
NciI	CCSGG	1 cut(s)	468
NdeII	GATC	2 cut(s)	267, 351
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	3 cut(s)	293, 446, 473
NmeAIII	GCCGAG	1 cut(s)	68
NmuCI	GTSAC	1 cut(s)	189
PaeR7I	CTCGAG	1 cut(s)	476
PcsI	WCGNNNNNNNCGW	1 cut(s)	44
PctI	GAATGC	1 cut(s)	92
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	3 cut(s)	136, 216, 296
PleI	GAGTC	2 cut(s)	29, 35
PmaCI	CACGTG	1 cut(s)	452
PmlI	CACGTG	1 cut(s)	452
PpsI	GAGTC	2 cut(s)	29, 35
Ppu21I	YACGTR	1 cut(s)	452
PpuMI	RGGWCCY	1 cut(s)	444
Psp124BI	GAGCTC	1 cut(s)	436
Psp5II	RGGWCCY	1 cut(s)	444
PspCI	CACGTG	1 cut(s)	452
PspN4I	GGNNCC	3 cut(s)	293, 446, 473
PspPI	GGNCC	2 cut(s)	292, 444
PspPPI	RGGWCCY	1 cut(s)	444
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
SacI	GAGCTC	1 cut(s)	436
SalI	GTCGAC	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	426
SatI	GCNGC	3 cut(s)	135, 215, 295
Sau3AI	GATC	2 cut(s)	267, 351
Sau96I	GGNCC	2 cut(s)	292, 444
SchI	GAGTC	2 cut(s)	29, 35
ScrFI	CCNGG	1 cut(s)	468
SduI	GDGCHC	1 cut(s)	436
SetI	ASST	7 cut(s)	219, 251, 350, 436, 446, 454, 477
SfaNI	GCATC	2 cut(s)	39, 453
Sfr274I	CTCGAG	1 cut(s)	476
SinI	GGWCC	1 cut(s)	444
SlaI	CTCGAG	1 cut(s)	476
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	1 cut(s)	396
SsiI	CCGC	3 cut(s)	135, 295, 305
SspI	AATATT	1 cut(s)	29
SstI	GAGCTC	1 cut(s)	436
StyD4I	CCNGG	1 cut(s)	466
TaaI	ACNGT	2 cut(s)	287, 332
TaiI	ACGT	2 cut(s)	251, 454
TaqI	TCGA	4 cut(s)	47, 224, 350, 477
TasI	AATT	1 cut(s)	396
TauI	GCSGC	2 cut(s)	137, 297
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TseFI	GTSAC	1 cut(s)	189
TseI	GCWGC	1 cut(s)	214
Tsp45I	GTSAC	1 cut(s)	189
TspGWI	ACGGA	2 cut(s)	73, 444
VpaK11BI	GGWCC	1 cut(s)	444
XcmI	CCANNNNNNNNNTGG	1 cut(s)	70
XhoI	CTCGAG	1 cut(s)	476
XmiI	GTMKAC	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.