Prupe.5G216600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0010332
Physical Location & Seq
Reverse (-)
16980341 .. 16980826
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G216600.1

Sequence Viewer

Length: 486 bp
ATGGACCGTCGTCTCCGTACAGGCACGGAATATCCCAGCTCGGACTGTCCGGCGCGCCTGAAATCCAAAGCCCGGATGATCAACTCCGTCTCGGCTCTGGTCGACATAGCCAGCCGCCTCTCCAAGAAGCTCAAGGCTAAGCCGAGGAGCGCTAATAACTCGAAAATCGCCCCCAAGTCATCGCCGATGAGGAAGCCGAAGCAGCTGATGTCGACCATAAGCAACAAGGCGATCACGTTCCTGCACAGGAAAAAGATTGGCGAGGAATCGGCGGACGCCCACCTCGAGGATAAGGAGGAAGAGTGGGGGAACGGCGGGGTCTGGCAGAGGTCTATCCTGATGGGGGACAAGTGCGAGCCGTTGGATTTCTCGGGTGCGATTTATTACGACAGTCACGGGAACCAGCTGAACGGAGCACCTCTCCGGTCCCCACGTGCGAGTCCCTTGCCTGGGTACCTCGAGAGGGCCGCTCATAAGAGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

17.92

Weight (kDa)

10.0

Isoelectric Point (pI)

52.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 284
Acc65I GGTACC 1 cut(s) 453
AccB1I GGYRCC 1 cut(s) 453
AccBSI CCGCTC 1 cut(s) 470
AccI GTMKAC 2 cut(s) 102, 212
AccII CGCG 1 cut(s) 55
AciI CCGC 4 cut(s) 115, 272, 315, 468
AcvI CACGTG 1 cut(s) 434
AcyI GRCGYC 1 cut(s) 276
AfaI GTAC 2 cut(s) 19, 455
AfeI AGCGCT 1 cut(s) 151
AfiI CCNNNNNNNGG 6 cut(s) 72, 286, 343, 449, 450, 463
AjnI CCWGG 1 cut(s) 448
AluBI AGCT 4 cut(s) 39, 130, 205, 406
AluI AGCT 4 cut(s) 39, 130, 205, 406
Alw21I GWGCWC 1 cut(s) 418
Alw26I GTCTC 2 cut(s) 17, 94
Ama87I CYCGRG 3 cut(s) 284, 370, 458
Aor51HI AGCGCT 1 cut(s) 151
AoxI GGCC 1 cut(s) 465
ApeKI GCWGC 1 cut(s) 202
AscI GGCGCGCC 1 cut(s) 53
Asp718I GGTACC 1 cut(s) 453
AspLEI GCGC 3 cut(s) 55, 57, 152
AspS9I GGNCC 3 cut(s) 4, 426, 465
AsuC2I CCSGG 1 cut(s) 73
AvaI CYCGRG 3 cut(s) 284, 370, 458
AvaII GGWCC 2 cut(s) 4, 426
BanI GGYRCC 1 cut(s) 453
BbrPI CACGTG 1 cut(s) 434
Bbv12I GWGCWC 1 cut(s) 418
BbvI GCAGC 1 cut(s) 214
BccI CCATC 1 cut(s) 334
BceAI ACGGC 2 cut(s) 328, 343
BcgI CGANNNNNNTGC 2 cut(s) 427, 461
BciT130I CCWGG 1 cut(s) 450
BclI TGATCA 1 cut(s) 78
BcnI CCSGG 1 cut(s) 73
BcoDI GTCTC 2 cut(s) 17, 94
BfoI RGCGCY 1 cut(s) 153
BisI GCNGC 3 cut(s) 115, 203, 468
BlpI GCTNAGC 1 cut(s) 138
BlsI GCNGC 3 cut(s) 116, 204, 469
Bme1390I CCNGG 2 cut(s) 73, 450
Bme18I GGWCC 2 cut(s) 4, 426
BmeT110I CYCGRG 3 cut(s) 284, 370, 458
BmgT120I GGNCC 3 cut(s) 4, 426, 465
BmiI GGNNCC 3 cut(s) 401, 428, 455
BmrFI CCNGG 2 cut(s) 73, 450
BoxI GACNNNNGTC 1 cut(s) 9
BplI GAGNNNNNCTC 4 cut(s) 405, 437, 454, 486
Bpu1102I GCTNAGC 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 116
BpuMI CCSGG 1 cut(s) 73
BsaAI YACGTR 1 cut(s) 434
BsaHI GRCGYC 1 cut(s) 276
BsaJI CCNNGG 2 cut(s) 143, 449
BsaWI WCCGGW 1 cut(s) 423
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 6 cut(s) 72, 286, 343, 449, 450, 463
BseBI CCWGG 1 cut(s) 450
BseDI CCNNGG 2 cut(s) 143, 449
BseGI GGATG 1 cut(s) 81
BseLI CCNNNNNNNGG 6 cut(s) 72, 286, 343, 449, 450, 463
BsePI GCGCGC 1 cut(s) 53
BseRI GAGGAG 1 cut(s) 160
BseXI GCAGC 1 cut(s) 214
BseYI CCCAGC 1 cut(s) 35
BsgI GTGCAG 1 cut(s) 227
Bsh1236I CGCG 1 cut(s) 55
BshFI GGCC 1 cut(s) 467
BshNI GGYRCC 1 cut(s) 453
BsiHKAI GWGCWC 1 cut(s) 418
BsiHKCI CYCGRG 3 cut(s) 284, 370, 458
BsiSI CCGG 3 cut(s) 50, 73, 424
BslFI GGGAC 3 cut(s) 359, 412, 426
BslI CCNNNNNNNGG 6 cut(s) 72, 286, 343, 449, 450, 463
BsmAI GTCTC 2 cut(s) 17, 94
BsmBI CGTCTC 2 cut(s) 17, 94
BsmFI GGGAC 3 cut(s) 359, 412, 426
BsnI GGCC 1 cut(s) 467
BsoBI CYCGRG 3 cut(s) 284, 370, 458
Bsp1286I GDGCHC 1 cut(s) 418
Bsp143I GATC 2 cut(s) 78, 231
Bsp1720I GCTNAGC 1 cut(s) 138
BspACI CCGC 4 cut(s) 115, 272, 315, 468
BspANI GGCC 1 cut(s) 467
BspFNI CGCG 1 cut(s) 55
BspLI GGNNCC 3 cut(s) 401, 428, 455
BspT107I GGYRCC 1 cut(s) 453
BsrBI CCGCTC 1 cut(s) 470
BssECI CCNNGG 2 cut(s) 143, 449
BssHII GCGCGC 1 cut(s) 53
BssMI GATC 2 cut(s) 78, 231
BssNI GRCGYC 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 450
Bst4CI ACNGT 3 cut(s) 8, 47, 392
Bst6I CTCTTC 1 cut(s) 294
BstACI GRCGYC 1 cut(s) 276
BstBAI YACGTR 1 cut(s) 434
BstC8I GCNNGC 3 cut(s) 55, 112, 356
BstDEI CTNAG 1 cut(s) 138
BstF5I GGATG 1 cut(s) 81
BstFNI CGCG 1 cut(s) 55
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 3 cut(s) 55, 57, 152
BstKTI GATC 2 cut(s) 81, 234
BstMAI GTCTC 2 cut(s) 17, 94
BstMBI GATC 2 cut(s) 78, 231
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstNI CCWGG 1 cut(s) 450
BstPAI GACNNNNGTC 1 cut(s) 9
BstSCI CCNGG 2 cut(s) 71, 448
BstUI CGCG 1 cut(s) 55
BstV1I GCAGC 1 cut(s) 214
BsuRI GGCC 1 cut(s) 467
BtgZI GCGATG 1 cut(s) 165
BtsCI GGATG 1 cut(s) 81
Cac8I GCNNGC 3 cut(s) 55, 112, 356
CfoI GCGC 3 cut(s) 55, 57, 152
Cfr13I GGNCC 3 cut(s) 4, 426, 465
CseI GACGC 1 cut(s) 284
Csp6I GTAC 2 cut(s) 18, 454
CviQI GTAC 2 cut(s) 18, 454
DdeI CTNAG 1 cut(s) 138
DpnI GATC 2 cut(s) 80, 233
DpnII GATC 2 cut(s) 78, 231
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
EciI GGCGGA 1 cut(s) 287
Eco47I GGWCC 2 cut(s) 4, 426
Eco47III AGCGCT 1 cut(s) 151
Eco72I CACGTG 1 cut(s) 434
Eco88I CYCGRG 3 cut(s) 284, 370, 458
EcoRII CCWGG 1 cut(s) 448
Esp3I CGTCTC 2 cut(s) 17, 94
FaiI YATR 3 cut(s) 107, 218, 474
FaqI GGGAC 3 cut(s) 359, 412, 426
FauI CCCGC 1 cut(s) 308
FbaI TGATCA 1 cut(s) 78
FblI GTMKAC 2 cut(s) 102, 212
Fnu4HI GCNGC 3 cut(s) 115, 203, 468
FokI GGATG 1 cut(s) 88
Fsp4HI GCNGC 3 cut(s) 115, 203, 468
GlaI GCGC 3 cut(s) 54, 56, 151
GluI GCNGC 3 cut(s) 115, 203, 468
GsaI CCCAGC 1 cut(s) 39
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 1 cut(s) 467
HapII CCGG 3 cut(s) 50, 73, 424
HgaI GACGC 1 cut(s) 284
HhaI GCGC 3 cut(s) 55, 57, 152
Hin1I GRCGYC 1 cut(s) 276
Hin6I GCGC 3 cut(s) 53, 55, 150
HinP1I GCGC 3 cut(s) 53, 55, 150
HincII GTYRAC 2 cut(s) 103, 213
HindII GTYRAC 2 cut(s) 103, 213
HinfI GANTC 2 cut(s) 266, 439
HpaII CCGG 3 cut(s) 50, 73, 424
Hpy166II GTNNAC 2 cut(s) 103, 213
Hpy188I TCNGA 1 cut(s) 43
Hpy188III TCNNGA 2 cut(s) 337, 460
Hpy8I GTNNAC 2 cut(s) 103, 213
Hpy99I CGWCG 1 cut(s) 12
HpyCH4III ACNGT 3 cut(s) 8, 47, 392
HpyCH4IV ACGT 2 cut(s) 236, 433
HpyCH4V TGCA 1 cut(s) 244
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
HpyF3I CTNAG 1 cut(s) 138
HpySE526I ACGT 2 cut(s) 236, 433
Hsp92I GRCGYC 1 cut(s) 276
HspAI GCGC 3 cut(s) 53, 55, 150
KpnI GGTACC 1 cut(s) 457
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 2 cut(s) 78, 231
LmnI GCTCC 2 cut(s) 147, 413
Lsp1109I GCAGC 1 cut(s) 214
MaeII ACGT 2 cut(s) 236, 433
MaeIII GTNAC 1 cut(s) 392
MalI GATC 2 cut(s) 80, 233
MbiI CCGCTC 1 cut(s) 470
MboI GATC 2 cut(s) 78, 231
MboII GAAGA 1 cut(s) 311
MhlI GDGCHC 1 cut(s) 418
MlyI GAGTC 1 cut(s) 448
MmeI TCCRAC 1 cut(s) 342
MspA1I CMGCKG 2 cut(s) 205, 406
MspI CCGG 3 cut(s) 50, 73, 424
MspR9I CCNGG 2 cut(s) 73, 450
MvaI CCWGG 1 cut(s) 450
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 1 cut(s) 202
NciI CCSGG 1 cut(s) 73
NdeII GATC 2 cut(s) 78, 231
NlaIV GGNNCC 3 cut(s) 401, 428, 455
NmeAIII GCCGAG 2 cut(s) 71, 168
NmuCI GTSAC 1 cut(s) 392
PaeR7I CTCGAG 2 cut(s) 284, 458
PalAI GGCGCGCC 1 cut(s) 53
PauI GCGCGC 1 cut(s) 53
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PfeI GAWTC 1 cut(s) 266
PkrI GCNGC 3 cut(s) 116, 204, 469
PleI GAGTC 1 cut(s) 447
PmaCI CACGTG 1 cut(s) 434
PmlI CACGTG 1 cut(s) 434
PpsI GAGTC 1 cut(s) 447
Ppu21I YACGTR 1 cut(s) 434
PshAI GACNNNNGTC 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 448
PspCI CACGTG 1 cut(s) 434
PspFI CCCAGC 1 cut(s) 35
PspGI CCWGG 1 cut(s) 448
PspN4I GGNNCC 3 cut(s) 401, 428, 455
PspPI GGNCC 3 cut(s) 4, 426, 465
PspXI VCTCGAGB 1 cut(s) 284
PteI GCGCGC 1 cut(s) 53
PvuII CAGCTG 2 cut(s) 205, 406
RsaI GTAC 2 cut(s) 19, 455
RsaNI GTAC 2 cut(s) 18, 454
SalI GTCGAC 2 cut(s) 101, 211
SatI GCNGC 3 cut(s) 115, 203, 468
Sau3AI GATC 2 cut(s) 78, 231
Sau96I GGNCC 3 cut(s) 4, 426, 465
SchI GAGTC 1 cut(s) 448
ScrFI CCNGG 2 cut(s) 73, 450
SduI GDGCHC 1 cut(s) 418
Sfr274I CTCGAG 2 cut(s) 284, 458
SgsI GGCGCGCC 1 cut(s) 53
SinI GGWCC 2 cut(s) 4, 426
SlaI CTCGAG 2 cut(s) 284, 458
SmlI CTYRAG 3 cut(s) 131, 284, 458
SmoI CTYRAG 3 cut(s) 131, 284, 458
SsiI CCGC 4 cut(s) 115, 272, 315, 468
StyD4I CCNGG 2 cut(s) 71, 448
TaaI ACNGT 3 cut(s) 8, 47, 392
TaiI ACGT 2 cut(s) 239, 436
TaqI TCGA 5 cut(s) 102, 161, 212, 285, 459
TauI GCSGC 2 cut(s) 117, 470
TfiI GAWTC 1 cut(s) 266
TseFI GTSAC 1 cut(s) 392
TseI GCWGC 1 cut(s) 202
Tsp45I GTSAC 1 cut(s) 392
TspGWI ACGGA 4 cut(s) 5, 41, 76, 426
VpaK11BI GGWCC 2 cut(s) 4, 426
XhoI CTCGAG 2 cut(s) 284, 458
XmiI GTMKAC 2 cut(s) 102, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.