Rh7CG068200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0010332
Physical Location & Seq
Reverse (-)
4871270 .. 4874059
2790 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG068200.1

Sequence Viewer

Length: 459 bp
ATGGTCCGTCGGCTCCGAACAAACTCCGAAGCCGACTCGGACAGCTATCCGATACGGCTGAGCTCGAAGGCGAGGTTGCTCGCCTCCGTCTCGGCCCTCATGGACATAGCCAGCCGCCTAACCCATAAGCTCAAGGCCAAGCCTATGATCAAGACGTCGTCGTTGAACAGGCCCAAGCAGCTGATGGCGACCATAAGCAACAAGGCCATCACGCTCATGCACCGGAAGAAGGTGGCCGGCGGCGGTGCGGGACCAAAGGGTGGTGGGGCCCTTGAGGAGGAGTGGGGAGACGGCGGGGTTTGGCAGCGGTCGATTCTAATGGGGGACAAGTGCGAGCCGTTGGATTTCTCGGGCGTAATATATTACGATAGTAAGGGGCAGCAGCTGAACGGGGCTCCTCTCAGGTCGCCACGTGCGAGTCCCTTGCCTGGGTACCTGGAGAGGGCTCAGAAAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.52

Weight (kDa)

10.14

Isoelectric Point (pI)

52.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 158
Acc65I GGTACC 1 cut(s) 432
AccB1I GGYRCC 1 cut(s) 432
AccB7I CCANNNNNTGG 1 cut(s) 260
AciI CCGC 6 cut(s) 115, 240, 243, 248, 294, 307
AcoI YGGCCR 1 cut(s) 234
AcvI CACGTG 1 cut(s) 413
AcyI GRCGYC 1 cut(s) 155
AfaI GTAC 1 cut(s) 434
AfiI CCNNNNNNNGG 6 cut(s) 229, 260, 277, 428, 429, 442
AgsI TTSAA 1 cut(s) 166
AjnI CCWGG 2 cut(s) 427, 435
AluBI AGCT 5 cut(s) 45, 63, 130, 181, 385
AluI AGCT 5 cut(s) 45, 63, 130, 181, 385
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 2 cut(s) 94, 282
AlwNI CAGNNNCTG 1 cut(s) 385
Ama87I CYCGRG 1 cut(s) 349
AoxI GGCC 6 cut(s) 93, 135, 170, 204, 234, 267
ApaI GGGCCC 1 cut(s) 271
ApeKI GCWGC 4 cut(s) 178, 304, 379, 382
Asp718I GGTACC 1 cut(s) 432
AspS9I GGNCC 6 cut(s) 4, 94, 171, 251, 267, 268
AvaI CYCGRG 1 cut(s) 349
AvaII GGWCC 2 cut(s) 4, 251
BaeGI GKGCMC 1 cut(s) 271
BanI GGYRCC 1 cut(s) 432
BanII GRGCYC 4 cut(s) 65, 271, 397, 448
BbrPI CACGTG 1 cut(s) 413
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 4 cut(s) 190, 316, 391, 394
BccI CCATC 2 cut(s) 178, 215
BceAI ACGGC 3 cut(s) 71, 307, 322
BcgI CGANNNNNNTGC 2 cut(s) 406, 440
BciT130I CCWGG 2 cut(s) 429, 437
BclI TGATCA 1 cut(s) 147
BcoDI GTCTC 2 cut(s) 94, 282
BisI GCNGC 6 cut(s) 115, 179, 241, 305, 380, 383
BlpI GCTNAGC 1 cut(s) 59
BlsI GCNGC 6 cut(s) 116, 180, 242, 306, 381, 384
Bme1390I CCNGG 2 cut(s) 429, 437
Bme18I GGWCC 2 cut(s) 4, 251
BmeT110I CYCGRG 1 cut(s) 349
BmgT120I GGNCC 6 cut(s) 4, 94, 171, 251, 267, 268
BmiI GGNNCC 6 cut(s) 14, 252, 268, 269, 396, 434
BmrFI CCNGG 2 cut(s) 429, 437
BpmI CTGGAG 1 cut(s) 458
Bpu1102I GCTNAGC 1 cut(s) 59
BpuEI CTTGAG 2 cut(s) 116, 293
BsaAI YACGTR 1 cut(s) 413
BsaHI GRCGYC 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 428
BsaWI WCCGGW 1 cut(s) 222
Bsc4I CCNNNNNNNGG 6 cut(s) 229, 260, 277, 428, 429, 442
Bse118I RCCGGY 1 cut(s) 236
BseBI CCWGG 2 cut(s) 429, 437
BseDI CCNNGG 1 cut(s) 428
BseLI CCNNNNNNNGG 6 cut(s) 229, 260, 277, 428, 429, 442
BseMII CTCAG 2 cut(s) 50, 415
BseRI GAGGAG 3 cut(s) 290, 293, 387
BseSI GKGCMC 1 cut(s) 271
BseXI GCAGC 4 cut(s) 190, 316, 391, 394
Bsh1285I CGRYCG 1 cut(s) 311
BshFI GGCC 6 cut(s) 95, 137, 172, 206, 236, 269
BshNI GGYRCC 1 cut(s) 432
BsiEI CGRYCG 1 cut(s) 311
BsiHKAI GWGCWC 1 cut(s) 65
BsiHKCI CYCGRG 1 cut(s) 349
BsiSI CCGG 2 cut(s) 223, 237
BslFI GGGAC 3 cut(s) 264, 338, 405
BslI CCNNNNNNNGG 6 cut(s) 229, 260, 277, 428, 429, 442
BsmAI GTCTC 2 cut(s) 94, 282
BsmBI CGTCTC 2 cut(s) 94, 282
BsmFI GGGAC 3 cut(s) 264, 338, 405
BsnI GGCC 6 cut(s) 95, 137, 172, 206, 236, 269
BsoBI CYCGRG 1 cut(s) 349
Bsp120I GGGCCC 1 cut(s) 267
Bsp1286I GDGCHC 4 cut(s) 65, 271, 397, 448
Bsp143I GATC 1 cut(s) 147
Bsp1720I GCTNAGC 1 cut(s) 59
BspACI CCGC 6 cut(s) 115, 240, 243, 248, 294, 307
BspANI GGCC 6 cut(s) 95, 137, 172, 206, 236, 269
BspCNI CTCAG 2 cut(s) 51, 414
BspLI GGNNCC 6 cut(s) 14, 252, 268, 269, 396, 434
BspT107I GGYRCC 1 cut(s) 432
BsrFI RCCGGY 1 cut(s) 236
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 1 cut(s) 428
BssMI GATC 1 cut(s) 147
BssNI GRCGYC 1 cut(s) 155
Bst2UI CCWGG 2 cut(s) 429, 437
BstACI GRCGYC 1 cut(s) 155
BstBAI YACGTR 1 cut(s) 413
BstC8I GCNNGC 4 cut(s) 81, 112, 238, 335
BstDEI CTNAG 3 cut(s) 59, 401, 447
BstENI CCTNNNNNAGG 1 cut(s) 275
BstKTI GATC 1 cut(s) 150
BstMAI GTCTC 2 cut(s) 94, 282
BstMBI GATC 1 cut(s) 147
BstMCI CGRYCG 1 cut(s) 311
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstNI CCWGG 2 cut(s) 429, 437
BstSCI CCNGG 2 cut(s) 427, 435
BstSLI GKGCMC 1 cut(s) 271
BstV1I GCAGC 4 cut(s) 190, 316, 391, 394
BsuRI GGCC 6 cut(s) 95, 137, 172, 206, 236, 269
Cac8I GCNNGC 4 cut(s) 81, 112, 238, 335
CaiI CAGNNNCTG 1 cut(s) 385
Cfr10I RCCGGY 1 cut(s) 236
Cfr13I GGNCC 6 cut(s) 4, 94, 171, 251, 267, 268
Csp6I GTAC 1 cut(s) 433
CviAII CATG 2 cut(s) 100, 217
CviQI GTAC 1 cut(s) 433
DdeI CTNAG 3 cut(s) 59, 401, 447
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
EaeI YGGCCR 1 cut(s) 234
Ecl136II GAGCTC 1 cut(s) 63
Eco24I GRGCYC 4 cut(s) 65, 271, 397, 448
Eco47I GGWCC 2 cut(s) 4, 251
Eco53kI GAGCTC 1 cut(s) 63
Eco72I CACGTG 1 cut(s) 413
Eco88I CYCGRG 1 cut(s) 349
EcoICRI GAGCTC 1 cut(s) 63
EcoNI CCTNNNNNAGG 1 cut(s) 275
EcoO109I RGGNCCY 2 cut(s) 267, 268
EcoRII CCWGG 2 cut(s) 427, 435
EcoT38I GRGCYC 4 cut(s) 65, 271, 397, 448
Esp3I CGTCTC 2 cut(s) 94, 282
FaeI CATG 2 cut(s) 103, 220
FaiI YATR 7 cut(s) 101, 107, 126, 146, 194, 218, 361
FaqI GGGAC 3 cut(s) 264, 338, 405
FatI CATG 2 cut(s) 99, 216
FauI CCCGC 2 cut(s) 241, 287
FbaI TGATCA 1 cut(s) 147
Fnu4HI GCNGC 6 cut(s) 115, 179, 241, 305, 380, 383
FriOI GRGCYC 4 cut(s) 65, 271, 397, 448
Fsp4HI GCNGC 6 cut(s) 115, 179, 241, 305, 380, 383
GluI GCNGC 6 cut(s) 115, 179, 241, 305, 380, 383
GsuI CTGGAG 1 cut(s) 458
HaeIII GGCC 6 cut(s) 95, 137, 172, 206, 236, 269
HapII CCGG 2 cut(s) 223, 237
Hin1I GRCGYC 1 cut(s) 155
Hin1II CATG 2 cut(s) 103, 220
HinfI GANTC 3 cut(s) 35, 313, 418
HpaII CCGG 2 cut(s) 223, 237
Hpy188I TCNGA 6 cut(s) 17, 28, 40, 51, 450, 458
Hpy188III TCNNGA 1 cut(s) 151
Hpy99I CGWCG 3 cut(s) 12, 160, 163
HpyAV CCTTC 2 cut(s) 61, 223
HpyCH4IV ACGT 2 cut(s) 155, 412
HpyCH4V TGCA 1 cut(s) 220
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
HpyF3I CTNAG 3 cut(s) 59, 401, 447
HpySE526I ACGT 2 cut(s) 155, 412
Hsp92I GRCGYC 1 cut(s) 155
Hsp92II CATG 2 cut(s) 103, 220
KpnI GGTACC 1 cut(s) 436
KroI GCCGGC 1 cut(s) 236
KroNI GCCGGC 1 cut(s) 238
Ksp22I TGATCA 1 cut(s) 147
Kzo9I GATC 1 cut(s) 147
LmnI GCTCC 2 cut(s) 18, 400
LpnPI CCDG 9 cut(s) 124, 154, 236, 250, 388, 414, 422, 441, 449
Lsp1109I GCAGC 4 cut(s) 190, 316, 391, 394
MaeII ACGT 2 cut(s) 155, 412
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 1 cut(s) 238
MhlI GDGCHC 4 cut(s) 65, 271, 397, 448
MlyI GAGTC 2 cut(s) 29, 427
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 7 cut(s) 66, 94, 107, 268, 271, 408, 435
MroNI GCCGGC 1 cut(s) 236
MslI CAYNNNNRTG 1 cut(s) 215
MspA1I CMGCKG 3 cut(s) 181, 307, 385
MspI CCGG 2 cut(s) 223, 237
MspR9I CCNGG 2 cut(s) 429, 437
MvaI CCWGG 2 cut(s) 429, 437
MwoI GCNNNNNNNGC 1 cut(s) 178
NaeI GCCGGC 1 cut(s) 238
NdeII GATC 1 cut(s) 147
NgoMIV GCCGGC 1 cut(s) 236
NlaIII CATG 2 cut(s) 103, 220
NlaIV GGNNCC 6 cut(s) 14, 252, 268, 269, 396, 434
NmeAIII GCCGAG 1 cut(s) 71
PcsI WCGNNNNNNNCGW 1 cut(s) 413
PdiI GCCGGC 1 cut(s) 238
PfeI GAWTC 1 cut(s) 313
PflFI GACNNNGTC 1 cut(s) 157
PflMI CCANNNNNTGG 1 cut(s) 260
PkrI GCNGC 6 cut(s) 116, 180, 242, 306, 381, 384
PleI GAGTC 2 cut(s) 29, 426
PmaCI CACGTG 1 cut(s) 413
PmlI CACGTG 1 cut(s) 413
PpsI GAGTC 2 cut(s) 29, 426
Ppu21I YACGTR 1 cut(s) 413
Psp124BI GAGCTC 1 cut(s) 65
Psp6I CCWGG 2 cut(s) 427, 435
PspCI CACGTG 1 cut(s) 413
PspGI CCWGG 2 cut(s) 427, 435
PspN4I GGNNCC 6 cut(s) 14, 252, 268, 269, 396, 434
PspOMI GGGCCC 1 cut(s) 267
PspPI GGNCC 6 cut(s) 4, 94, 171, 251, 267, 268
PstNI CAGNNNCTG 1 cut(s) 385
PsyI GACNNNGTC 1 cut(s) 157
PvuII CAGCTG 2 cut(s) 181, 385
RsaI GTAC 1 cut(s) 434
RsaNI GTAC 1 cut(s) 433
RseI CAYNNNNRTG 1 cut(s) 215
SacI GAGCTC 1 cut(s) 65
SatI GCNGC 6 cut(s) 115, 179, 241, 305, 380, 383
Sau3AI GATC 1 cut(s) 147
Sau96I GGNCC 6 cut(s) 4, 94, 171, 251, 267, 268
SchI GAGTC 2 cut(s) 29, 427
ScrFI CCNGG 2 cut(s) 429, 437
SduI GDGCHC 4 cut(s) 65, 271, 397, 448
SinI GGWCC 2 cut(s) 4, 251
SmiMI CAYNNNNRTG 1 cut(s) 215
SmlI CTYRAG 2 cut(s) 131, 272
SmoI CTYRAG 2 cut(s) 131, 272
SsiI CCGC 6 cut(s) 115, 240, 243, 248, 294, 307
SstI GAGCTC 1 cut(s) 65
StyD4I CCNGG 2 cut(s) 427, 435
TaiI ACGT 2 cut(s) 158, 415
TaqI TCGA 2 cut(s) 65, 311
TauI GCSGC 2 cut(s) 117, 243
TfiI GAWTC 1 cut(s) 313
TseI GCWGC 4 cut(s) 178, 304, 379, 382
TspGWI ACGGA 1 cut(s) 76
Tth111I GACNNNGTC 1 cut(s) 157
Van91I CCANNNNNTGG 1 cut(s) 260
VpaK11BI GGWCC 2 cut(s) 4, 251
XagI CCTNNNNNAGG 1 cut(s) 275
XcmI CCANNNNNNNNNTGG 1 cut(s) 181
ZraI GACGTC 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.