Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010332

Physical Location & Seq

Genomic Coordinates Forward (+)

7210655 .. 7211486

Gene Structure 832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g12760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGTCCGTCGGCTCCGATCAAACTCCGAAGCCGACTCGGACAGCTGTCCGATACGGCTGAGCTCCAAGGAGAGGCTGCTCGCCTCCGTTGCTGCCCTCATGGACATAGCTAGCCGCTTAACACATAAGCTCAAGGCCAAGCAGCCTAGGAATACGTCCTCGTCGTTGAACAGGCCCAAGCAGCTGATGTCGACCATAAGCAACAAGGCCATCACGCTTCTAAACCGGAAGAAGGTCGGCGGCGGCGAGAGGCACAAGGGTAAGGCTCATGAGGAGGAGGAGTGGGGAGACGGCGGGGTGTGGCAGCGGTCGATACTGATGGGGGACAAGTGTGAGCCGTTGGATTTCTCCGGCGCGATATATTACGATAGTAAGGGGCAGCAGATGACCGGAGTTCCTATCAGGTCGCCACGTGCGAGTCCCTTGCCGGGGTACCTGGAGAGGGCTCGAGCTCAGAAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

17.1

Weight (kDa)

10.1

Isoelectric Point (pI)

62.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49000 AT3G18560
fragaria_vesca	FvH4_5g12760
malus_domestica	MD06G1210500.v1.1 MD13G1047600.v1.1 MD14G1221200.v1.1
prunus_persica	Prupe.1G304400_v2.0.a1 Prupe.5G216600_v2.0.a1
pyrus_communis	pycom06g18800 pycom13g04190 pycom14g18300
rosa_chinensis	RchiOBHm_Chr7g0184511
rosa_laevigata	RLG00000004970
rosa_multiflora	Rmu_sc0001557.1_g000006 Rmu_sc0003710.1_g000008
rosa_roxburghii	Rroxscaffold_3G00269550
rosa_samantha	Rh7AG079500 Rh7BG067800 Rh7CG068200 Rh7DG067800
rosa_wichuraiana	Rw7G005580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	432
AccB1I	GGYRCC	1 cut(s)	432
AccI	GTMKAC	1 cut(s)	191
AccII	CGCG	1 cut(s)	356
AciI	CCGC	5 cut(s)	115, 240, 243, 294, 307
AcvI	CACGTG	1 cut(s)	413
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	5 cut(s)	72, 232, 428, 429, 442
AgsI	TTSAA	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	435
AluBI	AGCT	6 cut(s)	45, 63, 110, 130, 184, 452
AluI	AGCT	6 cut(s)	45, 63, 110, 130, 184, 452
Alw21I	GWGCWC	2 cut(s)	65, 454
Alw26I	GTCTC	1 cut(s)	282
Ama87I	CYCGRG	1 cut(s)	447
AoxI	GGCC	3 cut(s)	135, 173, 207
ApeKI	GCWGC	6 cut(s)	76, 92, 142, 181, 304, 379
Asp718I	GGTACC	1 cut(s)	432
AspA2I	CCTAGG	1 cut(s)	146
AspLEI	GCGC	1 cut(s)	356
AspS9I	GGNCC	2 cut(s)	4, 174
AsuC2I	CCSGG	1 cut(s)	429
AsuNHI	GCTAGC	1 cut(s)	110
AvaI	CYCGRG	1 cut(s)	447
AvaII	GGWCC	1 cut(s)	4
AvrII	CCTAGG	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	432
BanII	GRGCYC	3 cut(s)	65, 448, 454
BbrPI	CACGTG	1 cut(s)	413
Bbv12I	GWGCWC	2 cut(s)	65, 454
BbvI	GCAGC	6 cut(s)	63, 79, 154, 193, 316, 391
BccI	CCATC	2 cut(s)	218, 313
BceAI	ACGGC	3 cut(s)	71, 307, 322
BcgI	CGANNNNNNTGC	2 cut(s)	406, 440
BciT130I	CCWGG	1 cut(s)	437
BcnI	CCSGG	1 cut(s)	429
BcoDI	GTCTC	1 cut(s)	282
BfaI	CTAG	2 cut(s)	111, 147
BisI	GCNGC	9 cut(s)	77, 93, 115, 143, 182, 241, 244, 305, 380
BlnI	CCTAGG	1 cut(s)	146
BlpI	GCTNAGC	1 cut(s)	59
BlsI	GCNGC	9 cut(s)	78, 94, 116, 144, 183, 242, 245, 306, 381
Bme1390I	CCNGG	2 cut(s)	429, 437
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	447
BmgT120I	GGNCC	2 cut(s)	4, 174
BmiI	GGNNCC	2 cut(s)	14, 434
BmrFI	CCNGG	2 cut(s)	429, 437
BmtI	GCTAGC	1 cut(s)	114
BoxI	GACNNNNGTC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	458
Bpu1102I	GCTNAGC	1 cut(s)	59
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	429
BsaAI	YACGTR	1 cut(s)	413
BsaJI	CCNNGG	3 cut(s)	66, 146, 428
BsaWI	WCCGGW	2 cut(s)	225, 389
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bsc4I	CCNNNNNNNGG	5 cut(s)	72, 232, 428, 429, 442
BseBI	CCWGG	1 cut(s)	437
BseDI	CCNNGG	3 cut(s)	66, 146, 428
BseLI	CCNNNNNNNGG	5 cut(s)	72, 232, 428, 429, 442
BseMII	CTCAG	1 cut(s)	50
BseRI	GAGGAG	3 cut(s)	287, 290, 293
BseXI	GCAGC	6 cut(s)	63, 79, 154, 193, 316, 391
Bsh1236I	CGCG	1 cut(s)	356
Bsh1285I	CGRYCG	1 cut(s)	311
BshFI	GGCC	3 cut(s)	137, 175, 209
BshNI	GGYRCC	1 cut(s)	432
BsiEI	CGRYCG	1 cut(s)	311
BsiHKAI	GWGCWC	2 cut(s)	65, 454
BsiHKCI	CYCGRG	1 cut(s)	447
BsiSI	CCGG	4 cut(s)	226, 351, 390, 428
BslFI	GGGAC	2 cut(s)	338, 405
BslI	CCNNNNNNNGG	5 cut(s)	72, 232, 428, 429, 442
BsmAI	GTCTC	1 cut(s)	282
BsmBI	CGTCTC	1 cut(s)	282
BsmFI	GGGAC	2 cut(s)	338, 405
BsnI	GGCC	3 cut(s)	137, 175, 209
BsoBI	CYCGRG	1 cut(s)	447
Bsp1286I	GDGCHC	3 cut(s)	65, 448, 454
Bsp143I	GATC	1 cut(s)	17
Bsp1720I	GCTNAGC	1 cut(s)	59
BspACI	CCGC	5 cut(s)	115, 240, 243, 294, 307
BspANI	GGCC	3 cut(s)	137, 175, 209
BspCNI	CTCAG	1 cut(s)	51
BspFNI	CGCG	1 cut(s)	356
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	2 cut(s)	14, 434
BspOI	GCTAGC	1 cut(s)	114
BspT107I	GGYRCC	1 cut(s)	432
BssECI	CCNNGG	3 cut(s)	66, 146, 428
BssMI	GATC	1 cut(s)	17
BssT1I	CCWWGG	2 cut(s)	66, 146
Bst2UI	CCWGG	1 cut(s)	437
BstBAI	YACGTR	1 cut(s)	413
BstC8I	GCNNGC	2 cut(s)	81, 112
BstDEI	CTNAG	2 cut(s)	59, 453
BstFNI	CGCG	1 cut(s)	356
BstHHI	GCGC	1 cut(s)	356
BstKTI	GATC	1 cut(s)	20
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	1 cut(s)	17
BstMCI	CGRYCG	1 cut(s)	311
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 181
BstNI	CCWGG	1 cut(s)	437
BstPAI	GACNNNNGTC	1 cut(s)	45
BstSCI	CCNGG	2 cut(s)	427, 435
BstUI	CGCG	1 cut(s)	356
BstV1I	GCAGC	6 cut(s)	63, 79, 154, 193, 316, 391
BsuRI	GGCC	3 cut(s)	137, 175, 209
Cac8I	GCNNGC	2 cut(s)	81, 112
CciI	TCATGA	1 cut(s)	268
CfoI	GCGC	1 cut(s)	356
Cfr13I	GGNCC	2 cut(s)	4, 174
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	2 cut(s)	100, 269
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	2 cut(s)	59, 453
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
Ecl136II	GAGCTC	2 cut(s)	63, 452
Eco130I	CCWWGG	2 cut(s)	66, 146
Eco24I	GRGCYC	3 cut(s)	65, 448, 454
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	2 cut(s)	63, 452
Eco72I	CACGTG	1 cut(s)	413
Eco88I	CYCGRG	1 cut(s)	447
EcoICRI	GAGCTC	2 cut(s)	63, 452
EcoRII	CCWGG	1 cut(s)	435
EcoT14I	CCWWGG	2 cut(s)	66, 146
EcoT38I	GRGCYC	3 cut(s)	65, 448, 454
ErhI	CCWWGG	2 cut(s)	66, 146
Esp3I	CGTCTC	1 cut(s)	282
FaeI	CATG	2 cut(s)	103, 272
FaiI	YATR	6 cut(s)	101, 107, 126, 197, 270, 361
FaqI	GGGAC	2 cut(s)	338, 405
FatI	CATG	2 cut(s)	99, 268
FauI	CCCGC	1 cut(s)	287
FblI	GTMKAC	1 cut(s)	191
Fnu4HI	GCNGC	9 cut(s)	77, 93, 115, 143, 182, 241, 244, 305, 380
FriOI	GRGCYC	3 cut(s)	65, 448, 454
Fsp4HI	GCNGC	9 cut(s)	77, 93, 115, 143, 182, 241, 244, 305, 380
FspBI	CTAG	2 cut(s)	111, 147
GlaI	GCGC	1 cut(s)	355
GluI	GCNGC	9 cut(s)	77, 93, 115, 143, 182, 241, 244, 305, 380
GsuI	CTGGAG	1 cut(s)	458
HaeIII	GGCC	3 cut(s)	137, 175, 209
HapII	CCGG	4 cut(s)	226, 351, 390, 428
HhaI	GCGC	1 cut(s)	356
Hin1II	CATG	2 cut(s)	103, 272
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HinfI	GANTC	2 cut(s)	35, 418
HpaII	CCGG	4 cut(s)	226, 351, 390, 428
Hpy166II	GTNNAC	1 cut(s)	192
Hpy188I	TCNGA	6 cut(s)	17, 28, 40, 51, 456, 464
Hpy188III	TCNNGA	1 cut(s)	269
Hpy8I	GTNNAC	1 cut(s)	192
Hpy99I	CGWCG	2 cut(s)	12, 166
HpyAV	CCTTC	1 cut(s)	226
HpyCH4IV	ACGT	2 cut(s)	155, 412
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 181
HpyF3I	CTNAG	2 cut(s)	59, 453
HpySE526I	ACGT	2 cut(s)	155, 412
Hsp92II	CATG	2 cut(s)	103, 272
HspAI	GCGC	1 cut(s)	354
KpnI	GGTACC	1 cut(s)	436
Kzo9I	GATC	1 cut(s)	17
LmnI	GCTCC	2 cut(s)	18, 68
LpnPI	CCDG	8 cut(s)	157, 239, 364, 388, 403, 422, 441, 449
Lsp1109I	GCAGC	6 cut(s)	63, 79, 154, 193, 316, 391
MaeI	CTAG	2 cut(s)	111, 147
MaeII	ACGT	2 cut(s)	155, 412
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MboII	GAAGA	1 cut(s)	241
MhlI	GDGCHC	3 cut(s)	65, 448, 454
MlyI	GAGTC	2 cut(s)	29, 427
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	9 cut(s)	66, 94, 107, 169, 243, 265, 268, 271, 435
MseI	TTAA	1 cut(s)	119
MspA1I	CMGCKG	3 cut(s)	45, 184, 307
MspI	CCGG	4 cut(s)	226, 351, 390, 428
MspR9I	CCNGG	2 cut(s)	429, 437
MvaI	CCWGG	1 cut(s)	437
MvnI	CGCG	1 cut(s)	356
MwoI	GCNNNNNNNGC	2 cut(s)	89, 181
NciI	CCSGG	1 cut(s)	429
NdeII	GATC	1 cut(s)	17
NheI	GCTAGC	1 cut(s)	110
NlaIII	CATG	2 cut(s)	103, 272
NlaIV	GGNNCC	2 cut(s)	14, 434
PaeR7I	CTCGAG	1 cut(s)	447
PagI	TCATGA	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	3 cut(s)	161, 243, 413
PkrI	GCNGC	9 cut(s)	78, 94, 116, 144, 183, 242, 245, 306, 381
PleI	GAGTC	2 cut(s)	29, 426
PmaCI	CACGTG	1 cut(s)	413
PmlI	CACGTG	1 cut(s)	413
PpsI	GAGTC	2 cut(s)	29, 426
Ppu21I	YACGTR	1 cut(s)	413
PshAI	GACNNNNGTC	1 cut(s)	45
Psp124BI	GAGCTC	2 cut(s)	65, 454
Psp6I	CCWGG	1 cut(s)	435
PspCI	CACGTG	1 cut(s)	413
PspGI	CCWGG	1 cut(s)	435
PspN4I	GGNNCC	2 cut(s)	14, 434
PspPI	GGNCC	2 cut(s)	4, 174
PspXI	VCTCGAGB	1 cut(s)	447
PvuII	CAGCTG	2 cut(s)	45, 184
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
SacI	GAGCTC	2 cut(s)	65, 454
SalI	GTCGAC	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	119
SatI	GCNGC	9 cut(s)	77, 93, 115, 143, 182, 241, 244, 305, 380
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	2 cut(s)	4, 174
SchI	GAGTC	2 cut(s)	29, 427
ScrFI	CCNGG	2 cut(s)	429, 437
SduI	GDGCHC	3 cut(s)	65, 448, 454
Sfr274I	CTCGAG	1 cut(s)	447
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	447
SmlI	CTYRAG	2 cut(s)	131, 447
SmoI	CTYRAG	2 cut(s)	131, 447
SsiI	CCGC	5 cut(s)	115, 240, 243, 294, 307
SspMI	CTAG	2 cut(s)	111, 147
SstI	GAGCTC	2 cut(s)	65, 454
StyD4I	CCNGG	2 cut(s)	427, 435
StyI	CCWWGG	2 cut(s)	66, 146
TaiI	ACGT	2 cut(s)	158, 415
TaqI	TCGA	3 cut(s)	191, 311, 448
TauI	GCSGC	3 cut(s)	117, 243, 246
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TseI	GCWGC	6 cut(s)	76, 92, 142, 181, 304, 379
TspGWI	ACGGA	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	4
XhoI	CTCGAG	1 cut(s)	447
XmaJI	CCTAGG	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	191
XspI	CTAG	2 cut(s)	111, 147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.