Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0010332

Physical Location & Seq

Genomic Coordinates Forward (+)

3351292 .. 3351987

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1047600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGTTCGTCCAATACCAGAGGTTGCAGCCAACAACTTCGCCTCAATGCCGCTAGCAATCGCCTTGTTCGTCTCAGTCTCTGCCCTTGTAGCTCTATGTGCCAAAGCCAACCATGTACACCGCCGTGCCTCGCCCGGAAAACAAACTAAGTCACCCTCGGCGGCACCTAAGCAACTTGTGGCCAGCCTCAGCAACAAGGCAATTCCACTCGTCTCCAAAAATAAAGGGGAAGAAGTTGAAGTCGTGGATGATGGGTTTGGAGAAGGAGGGGTGTGGCAGAGGTCAATTTTGATGGGTGAGAAGTGCCAGCCACCTGAATTTTCAGGTGTGATATATTATGATGAGCGTGGAAAACAGCTTTCTGAGCTGCCACCAAGGTCGCCTAGGGTCGCCAGTCCCTTGCCAAACCTTTTCTCTCCTGCGGCTAGAGATATGCGACCTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005048 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005768 GO:0005794 GO:0005802 GO:0006109 GO:0006605 GO:0006626 GO:0006793 GO:0006796 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0008104 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0017038 GO:0019222 GO:0030943 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0031984 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0042277 GO:0042578 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044431 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045040 GO:0045184 GO:0046907 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0065007 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0072657 GO:0080090 GO:0090150 GO:0090151 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

149

Amino Acids

15.88

Weight (kDa)

9.33

Isoelectric Point (pI)

60.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49000 AT3G18560
fragaria_vesca	FvH4_5g12760
malus_domestica	MD06G1210500.v1.1 MD13G1047600.v1.1 MD14G1221200.v1.1
prunus_persica	Prupe.1G304400_v2.0.a1 Prupe.5G216600_v2.0.a1
pyrus_communis	pycom06g18800 pycom13g04190 pycom14g18300
rosa_chinensis	RchiOBHm_Chr7g0184511
rosa_laevigata	RLG00000004970
rosa_multiflora	Rmu_sc0001557.1_g000006 Rmu_sc0003710.1_g000008
rosa_roxburghii	Rroxscaffold_3G00269550
rosa_samantha	Rh7AG079500 Rh7BG067800 Rh7CG068200 Rh7DG067800
rosa_wichuraiana	Rw7G005580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	163
AciI	CCGC	4 cut(s)	50, 121, 161, 422
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	1 cut(s)	317
AfaI	GTAC	1 cut(s)	117
AgsI	TTSAA	1 cut(s)	239
AleI	CACNNNNGTG	1 cut(s)	123
AluBI	AGCT	3 cut(s)	92, 358, 367
AluI	AGCT	3 cut(s)	92, 358, 367
Alw26I	GTCTC	3 cut(s)	76, 82, 217
AlwNI	CAGNNNCTG	1 cut(s)	80
AoxI	GGCC	1 cut(s)	180
ApeKI	GCWGC	2 cut(s)	26, 367
ApoI	RAATTY	1 cut(s)	317
AspA2I	CCTAGG	1 cut(s)	383
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	2 cut(s)	144, 308
AsuNHI	GCTAGC	1 cut(s)	52
AvrII	CCTAGG	1 cut(s)	383
BalI	TGGCCA	1 cut(s)	182
BanI	GGYRCC	1 cut(s)	163
BbvCI	CCTCAGC	1 cut(s)	188
BbvI	GCAGC	2 cut(s)	38, 354
BccI	CCATC	2 cut(s)	245, 286
BceAI	ACGGC	1 cut(s)	108
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	3 cut(s)	76, 82, 217
BfaI	CTAG	4 cut(s)	53, 384, 426, 445
BisI	GCNGC	5 cut(s)	27, 50, 162, 368, 423
BlnI	CCTAGG	1 cut(s)	383
BlsI	GCNGC	5 cut(s)	28, 51, 163, 369, 424
Bme1390I	CCNGG	1 cut(s)	135
BmiI	GGNNCC	1 cut(s)	165
BmrFI	CCNGG	1 cut(s)	135
BmtI	GCTAGC	1 cut(s)	56
Bpu10I	CCTNAGC	2 cut(s)	168, 188
BpuMI	CCSGG	1 cut(s)	135
BsaJI	CCNNGG	3 cut(s)	156, 374, 383
Bse1I	ACTGG	1 cut(s)	393
BseDI	CCNNGG	3 cut(s)	156, 374, 383
BseGI	GGATG	1 cut(s)	253
BseMII	CTCAG	3 cut(s)	87, 202, 354
BseNI	ACTGG	1 cut(s)	393
BseXI	GCAGC	2 cut(s)	38, 354
BshFI	GGCC	1 cut(s)	182
BshNI	GGYRCC	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	381
BsmAI	GTCTC	3 cut(s)	76, 82, 217
BsmBI	CGTCTC	2 cut(s)	76, 217
BsmFI	GGGAC	1 cut(s)	381
BsnI	GGCC	1 cut(s)	182
Bsp1407I	TGTACA	1 cut(s)	115
BspACI	CCGC	4 cut(s)	50, 121, 161, 422
BspANI	GGCC	1 cut(s)	182
BspCNI	CTCAG	3 cut(s)	86, 201, 355
BspLI	GGNNCC	1 cut(s)	165
BspOI	GCTAGC	1 cut(s)	56
BspT107I	GGYRCC	1 cut(s)	163
BsrGI	TGTACA	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	393
BssECI	CCNNGG	3 cut(s)	156, 374, 383
BssT1I	CCWWGG	2 cut(s)	374, 383
BstAUI	TGTACA	1 cut(s)	115
BstC8I	GCNNGC	3 cut(s)	54, 184, 308
BstDEI	CTNAG	5 cut(s)	73, 147, 168, 188, 363
BstF5I	GGATG	1 cut(s)	253
BstMAI	GTCTC	3 cut(s)	76, 82, 217
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 98, 364
BstSCI	CCNGG	1 cut(s)	133
BstV1I	GCAGC	2 cut(s)	38, 354
BsuRI	GGCC	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	253
Cac8I	GCNNGC	3 cut(s)	54, 184, 308
CaiI	CAGNNNCTG	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	9 cut(s)	29, 92, 107, 182, 186, 310, 358, 367, 425
CviKI_1	RGCY	9 cut(s)	29, 92, 107, 182, 186, 310, 358, 367, 425
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	5 cut(s)	73, 147, 168, 188, 363
EaeI	YGGCCR	1 cut(s)	180
Eco130I	CCWWGG	2 cut(s)	374, 383
EcoT14I	CCWWGG	2 cut(s)	374, 383
ErhI	CCWWGG	2 cut(s)	374, 383
Esp3I	CGTCTC	2 cut(s)	76, 217
FaeI	CATG	1 cut(s)	116
FaiI	YATR	5 cut(s)	97, 114, 334, 339, 434
FaqI	GGGAC	1 cut(s)	381
FatI	CATG	1 cut(s)	112
Fnu4HI	GCNGC	5 cut(s)	27, 50, 162, 368, 423
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	5 cut(s)	27, 50, 162, 368, 423
FspBI	CTAG	4 cut(s)	53, 384, 426, 445
GluI	GCNGC	5 cut(s)	27, 50, 162, 368, 423
HaeIII	GGCC	1 cut(s)	182
HapII	CCGG	1 cut(s)	135
Hin1II	CATG	1 cut(s)	116
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	2 cut(s)	144, 308
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	1 cut(s)	364
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	1 cut(s)	257
HpyCH4V	TGCA	1 cut(s)	26
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 98, 364
HpyF3I	CTNAG	5 cut(s)	73, 147, 168, 188, 363
Hsp92II	CATG	1 cut(s)	116
LpnPI	CCDG	8 cut(s)	30, 148, 196, 309, 320, 327, 406, 432
Lsp1109I	GCAGC	2 cut(s)	38, 354
MaeI	CTAG	4 cut(s)	53, 384, 426, 445
MaeIII	GTNAC	1 cut(s)	150
MboII	GAAGA	1 cut(s)	242
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	3 cut(s)	201, 285, 317
MluNI	TGGCCA	1 cut(s)	182
MnlI	CCTC	7 cut(s)	13, 52, 139, 166, 197, 260, 273
Mox20I	TGGCCA	1 cut(s)	182
MscI	TGGCCA	1 cut(s)	182
MslI	CAYNNNNRTG	1 cut(s)	123
Msp20I	TGGCCA	1 cut(s)	182
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	3 cut(s)	89, 98, 364
NciI	CCSGG	1 cut(s)	135
NheI	GCTAGC	1 cut(s)	52
NlaIII	CATG	1 cut(s)	116
NlaIV	GGNNCC	1 cut(s)	165
NmeAIII	GCCGAG	1 cut(s)	137
NmuCI	GTSAC	1 cut(s)	150
OliI	CACNNNNGTG	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PkrI	GCNGC	5 cut(s)	28, 51, 163, 369, 424
PspN4I	GGNNCC	1 cut(s)	165
PstNI	CAGNNNCTG	1 cut(s)	80
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
RseI	CAYNNNNRTG	1 cut(s)	123
SatI	GCNGC	5 cut(s)	27, 50, 162, 368, 423
ScrFI	CCNGG	1 cut(s)	135
SmiMI	CAYNNNNRTG	1 cut(s)	123
Sse9I	AATT	3 cut(s)	201, 285, 317
SsiI	CCGC	4 cut(s)	50, 121, 161, 422
SspMI	CTAG	4 cut(s)	53, 384, 426, 445
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	2 cut(s)	374, 383
TasI	AATT	3 cut(s)	201, 285, 317
TatI	WGTACW	1 cut(s)	115
TauI	GCSGC	3 cut(s)	52, 164, 425
TseFI	GTSAC	1 cut(s)	150
TseI	GCWGC	2 cut(s)	26, 367
Tsp45I	GTSAC	1 cut(s)	150
XapI	RAATTY	1 cut(s)	317
XmaJI	CCTAGG	1 cut(s)	383
XspI	CTAG	4 cut(s)	53, 384, 426, 445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.