Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010332

Physical Location & Seq

Genomic Coordinates Reverse (-)

29820504 .. 29820974

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G304400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGTTCGTCTAATTCCAGAAGTTGCAGCCAATGACCACTTTGGCTCAATGCCGCTAGCAATGGCCTTGTTCATCTCTGTCACAGCCCTTGTGGCTCTATGTGCTAAAGCCAAACATGGACGCCGAGCCCCACAACAAATCAATGAAACCAATTGCAAGGAAATTACTGATGGCTCCAAGAAACTCGTGGCCAGCATCAGCAACAAGGCAATTCCATTTGTGCACAAAAATAAAGTTGGCAGAGAAAATTGCAGCCAAGGTGATGAAGTTGAAGATGGGTTTGGAGAAGGAGGGGTTTGGCAGAGGTCAATTTTGATGGGCGACAAGTGTCAGCCACCTGAATTTTCAGGTGCGATTTATTATGATAGTTCTGGGAATCAGCTTTCTGAGCTGCCTCCAAGGTCACCTAGGGTTGCCAGTCCCTTGGCAATGCCTAGCTTTTTATCTCCCGTCGCTAGAGATGCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

16.78

Weight (kDa)

7.68

Isoelectric Point (pI)

55.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49000 AT3G18560
fragaria_vesca	FvH4_5g12760
malus_domestica	MD06G1210500.v1.1 MD13G1047600.v1.1 MD14G1221200.v1.1
prunus_persica	Prupe.1G304400_v2.0.a1 Prupe.5G216600_v2.0.a1
pyrus_communis	pycom06g18800 pycom13g04190 pycom14g18300
rosa_chinensis	RchiOBHm_Chr7g0184511
rosa_laevigata	RLG00000004970
rosa_multiflora	Rmu_sc0001557.1_g000006 Rmu_sc0003710.1_g000008
rosa_roxburghii	Rroxscaffold_3G00269550
rosa_samantha	Rh7AG079500 Rh7BG067800 Rh7CG068200 Rh7DG067800
rosa_wichuraiana	Rw7G005580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	53
AcoI	YGGCCR	1 cut(s)	189
AcsI	RAATTY	1 cut(s)	341
AcyI	GRCGYC	1 cut(s)	121
AgsI	TTSAA	1 cut(s)	272
AjuI	GAANNNNNNNTTGG	2 cut(s)	264, 296
AluBI	AGCT	3 cut(s)	382, 391, 438
AluI	AGCT	3 cut(s)	382, 391, 438
Alw21I	GWGCWC	1 cut(s)	225
Alw44I	GTGCAC	1 cut(s)	221
AoxI	GGCC	2 cut(s)	63, 189
ApaLI	GTGCAC	1 cut(s)	221
ApeKI	GCWGC	3 cut(s)	26, 252, 391
ApoI	RAATTY	1 cut(s)	341
AspA2I	CCTAGG	1 cut(s)	407
AsuHPI	GGTGA	2 cut(s)	272, 396
AsuNHI	GCTAGC	1 cut(s)	55
AvrII	CCTAGG	1 cut(s)	407
BaeGI	GKGCMC	1 cut(s)	225
BalI	TGGCCA	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	130
BauI	CACGAG	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	3 cut(s)	38, 264, 378
BccI	CCATC	3 cut(s)	164, 269, 310
BfaI	CTAG	4 cut(s)	56, 408, 435, 456
BglI	GCCNNNNNGGC	1 cut(s)	92
BisI	GCNGC	4 cut(s)	27, 53, 253, 392
BlnI	CCTAGG	1 cut(s)	407
BlsI	GCNGC	4 cut(s)	28, 54, 254, 393
BmiI	GGNNCC	1 cut(s)	175
BmsI	GCATC	2 cut(s)	204, 451
BmtI	GCTAGC	1 cut(s)	59
BoxI	GACNNNNGTC	1 cut(s)	327
BsaHI	GRCGYC	1 cut(s)	121
BsaJI	CCNNGG	4 cut(s)	256, 398, 407, 423
Bse1I	ACTGG	1 cut(s)	417
Bse3DI	GCAATG	2 cut(s)	66, 435
BseDI	CCNNGG	4 cut(s)	256, 398, 407, 423
BseMI	GCAATG	2 cut(s)	66, 435
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	1 cut(s)	417
BseSI	GKGCMC	1 cut(s)	225
BseXI	GCAGC	3 cut(s)	38, 264, 378
BshFI	GGCC	2 cut(s)	65, 191
BsiHKAI	GWGCWC	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	405
BsmFI	GGGAC	1 cut(s)	405
BsnI	GGCC	2 cut(s)	65, 191
Bsp1286I	GDGCHC	2 cut(s)	130, 225
BspACI	CCGC	1 cut(s)	53
BspANI	GGCC	2 cut(s)	65, 191
BspCNI	CTCAG	1 cut(s)	379
BspLI	GGNNCC	1 cut(s)	175
BspOI	GCTAGC	1 cut(s)	59
BsrDI	GCAATG	2 cut(s)	66, 435
BsrI	ACTGG	1 cut(s)	417
BssECI	CCNNGG	4 cut(s)	256, 398, 407, 423
BssNI	GRCGYC	1 cut(s)	121
BssSI	CACGAG	1 cut(s)	185
BssT1I	CCWWGG	4 cut(s)	256, 398, 407, 423
Bst2BI	CACGAG	1 cut(s)	185
BstACI	GRCGYC	1 cut(s)	121
BstC8I	GCNNGC	2 cut(s)	57, 193
BstDEI	CTNAG	1 cut(s)	387
BstEII	GGTNACC	1 cut(s)	402
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 101, 388, 461
BstPAI	GACNNNNGTC	1 cut(s)	327
BstPI	GGTNACC	1 cut(s)	402
BstSLI	GKGCMC	1 cut(s)	225
BstV1I	GCAGC	3 cut(s)	38, 264, 378
BstXI	CCANNNNNNTGG	1 cut(s)	424
BsuRI	GGCC	2 cut(s)	65, 191
Cac8I	GCNNGC	2 cut(s)	57, 193
CseI	GACGC	1 cut(s)	129
CviAII	CATG	1 cut(s)	116
DdeI	CTNAG	1 cut(s)	387
EaeI	YGGCCR	1 cut(s)	189
Eco130I	CCWWGG	4 cut(s)	256, 398, 407, 423
Eco24I	GRGCYC	1 cut(s)	130
Eco91I	GGTNACC	1 cut(s)	402
EcoO65I	GGTNACC	1 cut(s)	402
EcoT14I	CCWWGG	4 cut(s)	256, 398, 407, 423
EcoT38I	GRGCYC	1 cut(s)	130
ErhI	CCWWGG	4 cut(s)	256, 398, 407, 423
FaeI	CATG	1 cut(s)	119
FaiI	YATR	3 cut(s)	100, 117, 363
FaqI	GGGAC	1 cut(s)	405
FatI	CATG	1 cut(s)	115
Fnu4HI	GCNGC	4 cut(s)	27, 53, 253, 392
FriOI	GRGCYC	1 cut(s)	130
Fsp4HI	GCNGC	4 cut(s)	27, 53, 253, 392
FspBI	CTAG	4 cut(s)	56, 408, 435, 456
GluI	GCNGC	4 cut(s)	27, 53, 253, 392
HaeIII	GGCC	2 cut(s)	65, 191
HgaI	GACGC	1 cut(s)	129
Hin1I	GRCGYC	1 cut(s)	121
Hin1II	CATG	1 cut(s)	119
HinfI	GANTC	1 cut(s)	376
HphI	GGTGA	2 cut(s)	272, 396
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	1 cut(s)	388
Hpy188III	TCNNGA	1 cut(s)	17
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	1 cut(s)	455
HpyAV	CCTTC	1 cut(s)	281
HpyCH4V	TGCA	5 cut(s)	26, 156, 223, 252, 464
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 101, 388, 461
HpyF3I	CTNAG	1 cut(s)	387
Hsp92I	GRCGYC	1 cut(s)	121
Hsp92II	CATG	1 cut(s)	119
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	6 cut(s)	30, 205, 333, 351, 357, 430
Lsp1109I	GCAGC	3 cut(s)	38, 264, 378
LweI	GCATC	2 cut(s)	204, 451
MaeI	CTAG	4 cut(s)	56, 408, 435, 456
MaeIII	GTNAC	2 cut(s)	79, 402
MboII	GAAGA	1 cut(s)	284
MfeI	CAATTG	1 cut(s)	151
MhlI	GDGCHC	2 cut(s)	130, 225
MlsI	TGGCCA	1 cut(s)	191
MluCI	AATT	8 cut(s)	12, 151, 162, 210, 247, 309, 341, 466
MluNI	TGGCCA	1 cut(s)	191
MnlI	CCTC	3 cut(s)	284, 297, 405
Mox20I	TGGCCA	1 cut(s)	191
MscI	TGGCCA	1 cut(s)	191
MseI	TTAA	1 cut(s)	469
Msp20I	TGGCCA	1 cut(s)	191
MunI	CAATTG	1 cut(s)	151
MwoI	GCNNNNNNNGC	4 cut(s)	92, 101, 388, 461
NheI	GCTAGC	1 cut(s)	55
NlaIII	CATG	1 cut(s)	119
NlaIV	GGNNCC	1 cut(s)	175
NmeAIII	GCCGAG	1 cut(s)	149
NmuCI	GTSAC	2 cut(s)	79, 402
PfeI	GAWTC	1 cut(s)	376
PkrI	GCNGC	4 cut(s)	28, 54, 254, 393
PshAI	GACNNNNGTC	1 cut(s)	327
PspEI	GGTNACC	1 cut(s)	402
PspN4I	GGNNCC	1 cut(s)	175
SaqAI	TTAA	1 cut(s)	469
SatI	GCNGC	4 cut(s)	27, 53, 253, 392
SduI	GDGCHC	2 cut(s)	130, 225
SetI	ASST	9 cut(s)	262, 308, 340, 352, 384, 393, 404, 409, 440
SfaNI	GCATC	2 cut(s)	204, 451
Sse9I	AATT	8 cut(s)	12, 151, 162, 210, 247, 309, 341, 466
SsiI	CCGC	1 cut(s)	53
SspMI	CTAG	4 cut(s)	56, 408, 435, 456
StyI	CCWWGG	4 cut(s)	256, 398, 407, 423
TasI	AATT	8 cut(s)	12, 151, 162, 210, 247, 309, 341, 466
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	1 cut(s)	469
Tru9I	TTAA	1 cut(s)	469
TseFI	GTSAC	2 cut(s)	79, 402
TseI	GCWGC	3 cut(s)	26, 252, 391
Tsp45I	GTSAC	2 cut(s)	79, 402
TspDTI	ATGAA	3 cut(s)	61, 159, 279
VneI	GTGCAC	1 cut(s)	221
XapI	RAATTY	1 cut(s)	341
XcmI	CCANNNNNNNNNTGG	1 cut(s)	184
XmaJI	CCTAGG	1 cut(s)	407
XspI	CTAG	4 cut(s)	56, 408, 435, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.