Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008204

Physical Location & Seq

Genomic Coordinates Forward (+)

18215800 .. 18218339

Gene Structure 2540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G49240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAGGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTTGGTCGACCTAGACATCATGGTGTCATGGTTGGGATGAATCAGAAAGATGCGTATGTTGGTGATGAAGCACAATCCAAAAGAGGTATCCTCACATTGAAATACCCTATTGAGCATGGTGTTGTTAGCAACTGGGATGACATGGAGAAGATTTGGCATCACACTTTCTACAATGAGCTCCGTATTGCTCCTGAAGAGCACCCGGTTCTACTTACCGAGGCTCCTCTTAACCCAAAAGCCAACAGAGAGAAGATGACTCAGATCATGTTTGAGACCTTTAATTCTCCAGCTATGTATGTTGCCATTCAAGCTGTTCTATCACTTTACGCCAGTGGTCGTACAACCGGTATTGTGTTGGACTCTGGTGATGGTGTGTCTCACACTGTGCCTATCTACGAGGGTTTCTCACTTCCACATGCTATCCTCCGTCTCGACCTTGCTGGTCGTGACCTTACTGATTACCTCATGAAGATCCTTACCGAGAGAGGTTACATGTTCACCACAACAGCAGAACGGGAAATTGTGAGAGACATCAAGGAGAAGCTTTCCTTTGTCGCTGTCGACTACGAGCAAGAGATGGAGACCTCGAAAACCAGCTCCTCCATCGAAAAGAACTATGAATTACCCGACGGACAAGTGATCACGATCGGTGCTGAGAGATTCAGGTGCCCAGAAGTCCTTTTCCAGCCATCATTTGTTGGAATGGAAGCTGCAGGGATCCACGAGACAACTTACAACTCGATCATGAAGTGTGATGTTGATATCAGGAAGGACCTTTACGGTAACATTGTGCTCAGTGGTGGTACAACTATGTTCTCAGGTATTGCAGACCGTATGAGCAAAGAGATCACAGCTCTTGCCCCGAGCAGCATGAAGATTAAGGTCGTGGCACCACCCGAGAGGAAGTACAGTGTCTGGATTGGTGGTTCTATCCTTGCTTCCCTCAGCACTTTCCAGCAGATGTGGATCTCTAAGGCAGAGTATGATGAAGCAGGTCCAGGCATTGTCCACAGAAAATGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009941 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016020 GO:0016043 GO:0016049 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048869 GO:0050896 GO:0055044 GO:0060560 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

377

Amino Acids

41.86

Weight (kDa)

5.37

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	5 - 377	1.4e-144	Actin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49240 AT2G42090 AT2G42100 AT2G42170 AT2G42170 AT2G42170 AT3G18780 AT3G18780 AT3G18780
fragaria_vesca	FvH4_5g10190
malus_domestica	MD06G1127300.v1.1 MD14G1142600.v1.1
prunus_persica	Prupe.5G137100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0188051
rosa_laevigata	RLG00000004731
rosa_roxburghii	Rroxscaffold_3G00266780
rosa_rugosa	Rorug06G0487700 Rorug06G0487800
rosa_samantha	Rh7AG092100 Rh7BG093700 Rh7CG093000 Rh7DG094200
rosa_wichuraiana	Rw7G007960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1091
AccB1I	GGYRCC	2 cut(s)	774, 997
AccBSI	CCGCTC	1 cut(s)	92
AccI	GTMKAC	2 cut(s)	115, 669
AciI	CCGC	1 cut(s)	92
AclWI	GGATC	4 cut(s)	574, 820, 833, 1082
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	321
AdeI	CACNNNGTG	1 cut(s)	493
AfaI	GTAC	4 cut(s)	46, 448, 913, 1016
AflIII	ACRYGT	1 cut(s)	600
AgeI	ACCGGT	1 cut(s)	452
AgsI	TTSAA	3 cut(s)	23, 208, 416
AjnI	CCWGG	1 cut(s)	1105
AloI	GAACNNNNNNTCC	2 cut(s)	1018, 1050
AluBI	AGCT	7 cut(s)	286, 398, 419, 652, 705, 818, 962
AluI	AGCT	7 cut(s)	286, 398, 419, 652, 705, 818, 962
Alw21I	GWGCWC	3 cut(s)	288, 309, 903
Alw26I	GTCTC	6 cut(s)	374, 489, 542, 630, 683, 827
AlwI	GGATC	4 cut(s)	574, 820, 833, 1082
AlwNI	CAGNNNCTG	1 cut(s)	1023
Ama87I	CYCGRG	2 cut(s)	970, 1004
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	818, 975
AsiGI	ACCGGT	1 cut(s)	452
AspS9I	GGNCC	2 cut(s)	880, 1103
AsuC2I	CCSGG	1 cut(s)	311
AsuHPI	GGTGA	3 cut(s)	182, 485, 598
AvaI	CYCGRG	2 cut(s)	970, 1004
AvaII	GGWCC	2 cut(s)	880, 1103
BaeGI	GKGCMC	1 cut(s)	779
BamHI	GGATCC	1 cut(s)	825
BanI	GGYRCC	2 cut(s)	774, 997
BanII	GRGCYC	1 cut(s)	288
BarI	GAAGNNNNNNTAC	2 cut(s)	869, 901
BauI	CACGAG	1 cut(s)	830
Bbv12I	GWGCWC	3 cut(s)	288, 309, 903
BbvCI	CCTCAGC	1 cut(s)	1052
BbvI	GCAGC	2 cut(s)	805, 987
BccI	CCATC	4 cut(s)	470, 679, 719, 805
BciT130I	CCWGG	1 cut(s)	1107
BciVI	GTATCC	1 cut(s)	206
BclI	TGATCA	1 cut(s)	747
BcnI	CCSGG	1 cut(s)	311
BcoDI	GTCTC	6 cut(s)	374, 489, 542, 630, 683, 827
BfaI	CTAG	1 cut(s)	120
BfmI	CTRYAG	1 cut(s)	819
BfuAI	ACCTGC	1 cut(s)	1091
BfuI	GTATCC	1 cut(s)	206
BisI	GCNGC	2 cut(s)	819, 976
BlsI	GCNGC	2 cut(s)	820, 977
Bme1390I	CCNGG	2 cut(s)	311, 1107
Bme18I	GGWCC	2 cut(s)	880, 1103
BmeT110I	CYCGRG	2 cut(s)	970, 1004
BmgT120I	GGNCC	2 cut(s)	880, 1103
BmiI	GGNNCC	4 cut(s)	330, 776, 827, 999
BmrFI	CCNGG	2 cut(s)	311, 1107
BmrI	ACTGGG	2 cut(s)	96, 250
BmsI	GCATC	3 cut(s)	70, 148, 274
BmuI	ACTGGG	2 cut(s)	96, 250
BplI	GAGNNNNNCTC	4 cut(s)	183, 215, 497, 529
BpmI	CTGGAG	2 cut(s)	93, 378
Bpu10I	CCTNAGC	1 cut(s)	1052
BpuMI	CCSGG	1 cut(s)	311
BsaBI	GATNNNNATC	2 cut(s)	752, 1073
BsaI	GGTCTC	2 cut(s)	374, 683
BsaJI	CCNNGG	1 cut(s)	324
BsaWI	WCCGGW	1 cut(s)	452
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bse118I	RCCGGY	1 cut(s)	452
Bse1I	ACTGG	4 cut(s)	52, 102, 245, 438
Bse8I	GATNNNNATC	2 cut(s)	752, 1073
BseBI	CCWGG	1 cut(s)	1107
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	2 cut(s)	150, 250
BseJI	GATNNNNATC	2 cut(s)	752, 1073
BseMII	CTCAG	5 cut(s)	380, 753, 916, 939, 1066
BseNI	ACTGG	4 cut(s)	52, 102, 245, 438
BseRI	GAGGAG	2 cut(s)	321, 697
BseSI	GKGCMC	1 cut(s)	779
BseXI	GCAGC	2 cut(s)	805, 987
Bsh1285I	CGRYCG	1 cut(s)	756
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	2 cut(s)	774, 997
BshTI	ACCGGT	1 cut(s)	452
BsiEI	CGRYCG	1 cut(s)	756
BsiHKAI	GWGCWC	3 cut(s)	288, 309, 903
BsiHKCI	CYCGRG	2 cut(s)	970, 1004
BsiSI	CCGG	2 cut(s)	311, 453
BsmAI	GTCTC	6 cut(s)	374, 489, 542, 630, 683, 827
BsmBI	CGTCTC	1 cut(s)	542
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	2 cut(s)	374, 683
BsoBI	CYCGRG	2 cut(s)	970, 1004
Bsp1286I	GDGCHC	4 cut(s)	288, 309, 779, 903
Bsp143I	GATC	8 cut(s)	369, 579, 747, 753, 825, 849, 954, 1074
BspACI	CCGC	1 cut(s)	92
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	5 cut(s)	379, 754, 915, 938, 1065
BspHI	TCATGA	2 cut(s)	573, 852
BspLI	GGNNCC	4 cut(s)	330, 776, 827, 999
BspMAI	CTGCAG	1 cut(s)	823
BspMI	ACCTGC	1 cut(s)	1091
BspPI	GGATC	4 cut(s)	574, 820, 833, 1082
BspQI	GCTCTTC	1 cut(s)	297
BspT107I	GGYRCC	2 cut(s)	774, 997
BspTNI	GGTCTC	2 cut(s)	374, 683
BsrBI	CCGCTC	1 cut(s)	92
BsrFI	RCCGGY	1 cut(s)	452
BsrI	ACTGG	4 cut(s)	52, 102, 245, 438
BssAI	RCCGGY	1 cut(s)	452
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	8 cut(s)	369, 579, 747, 753, 825, 849, 954, 1074
BssSI	CACGAG	1 cut(s)	830
Bst2BI	CACGAG	1 cut(s)	830
Bst2UI	CCWGG	1 cut(s)	1107
Bst4CI	ACNGT	4 cut(s)	493, 890, 941, 1019
Bst6I	CTCTTC	1 cut(s)	297
BstDEI	CTNAG	6 cut(s)	366, 762, 902, 925, 1052, 1080
BstF5I	GGATG	2 cut(s)	150, 250
BstKTI	GATC	8 cut(s)	372, 582, 750, 756, 828, 852, 957, 1077
BstMAI	GTCTC	6 cut(s)	374, 489, 542, 630, 683, 827
BstMBI	GATC	8 cut(s)	369, 579, 747, 753, 825, 849, 954, 1074
BstMCI	CGRYCG	1 cut(s)	756
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 89, 416
BstNI	CCWGG	1 cut(s)	1107
BstNSI	RCATGY	2 cut(s)	527, 604
BstSCI	CCNGG	2 cut(s)	309, 1105
BstSFI	CTRYAG	1 cut(s)	819
BstSLI	GKGCMC	1 cut(s)	779
BstV1I	GCAGC	2 cut(s)	805, 987
BstX2I	RGATCY	3 cut(s)	579, 825, 1074
BstYI	RGATCY	3 cut(s)	579, 825, 1074
BsuI	GTATCC	1 cut(s)	206
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	150, 250
BtsIMutI	CAGTG	5 cut(s)	109, 445, 489, 910, 1024
BveI	ACCTGC	1 cut(s)	1091
CaiI	CAGNNNCTG	1 cut(s)	1023
CciI	TCATGA	2 cut(s)	573, 852
Cfr10I	RCCGGY	1 cut(s)	452
Cfr13I	GGNCC	2 cut(s)	880, 1103
Csp6I	GTAC	4 cut(s)	45, 447, 912, 1015
CspAI	ACCGGT	1 cut(s)	452
CviQI	GTAC	4 cut(s)	45, 447, 912, 1015
DdeI	CTNAG	6 cut(s)	366, 762, 902, 925, 1052, 1080
DpnI	GATC	8 cut(s)	371, 581, 749, 755, 827, 851, 956, 1076
DpnII	GATC	8 cut(s)	369, 579, 747, 753, 825, 849, 954, 1074
DraIII	CACNNNGTG	1 cut(s)	493
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Ecl136II	GAGCTC	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	288
Eco31I	GGTCTC	2 cut(s)	374, 683
Eco32I	GATATC	1 cut(s)	871
Eco47I	GGWCC	2 cut(s)	880, 1103
Eco53kI	GAGCTC	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	321
Eco88I	CYCGRG	2 cut(s)	970, 1004
EcoICRI	GAGCTC	1 cut(s)	286
EcoO109I	RGGNCCY	1 cut(s)	880
EcoRII	CCWGG	1 cut(s)	1105
EcoRV	GATATC	1 cut(s)	871
EcoT38I	GRGCYC	1 cut(s)	288
Esp3I	CGTCTC	1 cut(s)	542
FalI	AAGNNNNNCTT	2 cut(s)	641, 673
FbaI	TGATCA	1 cut(s)	747
FblI	GTMKAC	2 cut(s)	115, 669
Fnu4HI	GCNGC	2 cut(s)	819, 976
FokI	GGATG	2 cut(s)	157, 257
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	2 cut(s)	819, 976
FspBI	CTAG	1 cut(s)	120
GluI	GCNGC	2 cut(s)	819, 976
GsuI	CTGGAG	2 cut(s)	93, 378
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	311, 453
HincII	GTYRAC	2 cut(s)	116, 670
HindII	GTYRAC	2 cut(s)	116, 670
HindIII	AAGCTT	1 cut(s)	650
HinfI	GANTC	5 cut(s)	66, 148, 364, 467, 768
HpaII	CCGG	2 cut(s)	311, 453
HphI	GGTGA	3 cut(s)	182, 485, 598
Hpy166II	GTNNAC	4 cut(s)	116, 606, 670, 1117
Hpy188I	TCNGA	2 cut(s)	153, 369
Hpy188III	TCNNGA	8 cut(s)	299, 539, 554, 574, 751, 853, 874, 1024
Hpy8I	GTNNAC	4 cut(s)	116, 606, 670, 1117
Hpy99I	CGWCG	1 cut(s)	740
HpyAV	CCTTC	1 cut(s)	871
HpyCH4III	ACNGT	4 cut(s)	493, 890, 941, 1019
HpyCH4V	TGCA	2 cut(s)	821, 935
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 89, 416
HpyF3I	CTNAG	6 cut(s)	366, 762, 902, 925, 1052, 1080
Ksp22I	TGATCA	1 cut(s)	747
Kzo9I	GATC	8 cut(s)	369, 579, 747, 753, 825, 849, 954, 1074
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	5 cut(s)	88, 291, 301, 334, 710
Lsp1109I	GCAGC	2 cut(s)	805, 987
LweI	GCATC	3 cut(s)	70, 148, 274
MaeI	CTAG	1 cut(s)	120
MaeIII	GTNAC	4 cut(s)	35, 554, 596, 890
MalI	GATC	8 cut(s)	371, 581, 749, 755, 827, 851, 956, 1076
MbiI	CCGCTC	1 cut(s)	92
MboI	GATC	8 cut(s)	369, 579, 747, 753, 825, 849, 954, 1074
MboII	GAAGA	5 cut(s)	268, 314, 370, 589, 994
MflI	RGATCY	3 cut(s)	579, 825, 1074
MhlI	GDGCHC	4 cut(s)	288, 309, 779, 903
MluCI	AATT	3 cut(s)	388, 627, 728
MlyI	GAGTC	2 cut(s)	358, 461
MmeI	TCCRAC	2 cut(s)	444, 787
MseI	TTAA	4 cut(s)	57, 336, 387, 987
MslI	CAYNNNNRTG	1 cut(s)	129
MspI	CCGG	2 cut(s)	311, 453
MspR9I	CCNGG	2 cut(s)	311, 1107
MvaI	CCWGG	1 cut(s)	1107
MwoI	GCNNNNNNNGC	3 cut(s)	68, 89, 416
NciI	CCSGG	1 cut(s)	311
NdeII	GATC	8 cut(s)	369, 579, 747, 753, 825, 849, 954, 1074
NlaIV	GGNNCC	4 cut(s)	330, 776, 827, 999
NmuCI	GTSAC	2 cut(s)	35, 554
NspI	RCATGY	2 cut(s)	527, 604
PagI	TCATGA	2 cut(s)	573, 852
PciI	ACATGT	1 cut(s)	600
PciSI	GCTCTTC	1 cut(s)	297
PfeI	GAWTC	3 cut(s)	66, 148, 768
PinAI	ACCGGT	1 cut(s)	452
PkrI	GCNGC	2 cut(s)	820, 977
Ple19I	CGATCG	1 cut(s)	756
PleI	GAGTC	2 cut(s)	358, 461
PpsI	GAGTC	2 cut(s)	358, 461
PpuMI	RGGWCCY	1 cut(s)	880
PscI	ACATGT	1 cut(s)	600
Psp124BI	GAGCTC	1 cut(s)	288
Psp5II	RGGWCCY	1 cut(s)	880
Psp6I	CCWGG	1 cut(s)	1105
PspGI	CCWGG	1 cut(s)	1105
PspN4I	GGNNCC	4 cut(s)	330, 776, 827, 999
PspPI	GGNCC	2 cut(s)	880, 1103
PspPPI	RGGWCCY	1 cut(s)	880
PstI	CTGCAG	1 cut(s)	823
PstNI	CAGNNNCTG	1 cut(s)	1023
PsuI	RGATCY	3 cut(s)	579, 825, 1074
PvuI	CGATCG	1 cut(s)	756
RsaI	GTAC	4 cut(s)	46, 448, 913, 1016
RsaNI	GTAC	4 cut(s)	45, 447, 912, 1015
RseI	CAYNNNNRTG	1 cut(s)	129
SacI	GAGCTC	1 cut(s)	288
SalI	GTCGAC	2 cut(s)	114, 668
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	4 cut(s)	57, 336, 387, 987
SatI	GCNGC	2 cut(s)	819, 976
Sau3AI	GATC	8 cut(s)	369, 579, 747, 753, 825, 849, 954, 1074
Sau96I	GGNCC	2 cut(s)	880, 1103
SchI	GAGTC	2 cut(s)	358, 461
ScrFI	CCNGG	2 cut(s)	311, 1107
SduI	GDGCHC	4 cut(s)	288, 309, 779, 903
SfaNI	GCATC	3 cut(s)	70, 148, 274
SfcI	CTRYAG	1 cut(s)	819
SinI	GGWCC	2 cut(s)	880, 1103
SmiMI	CAYNNNNRTG	1 cut(s)	129
Sse9I	AATT	3 cut(s)	388, 627, 728
SsiI	CCGC	1 cut(s)	92
SspMI	CTAG	1 cut(s)	120
SstI	GAGCTC	1 cut(s)	288
StyD4I	CCNGG	2 cut(s)	309, 1105
TaaI	ACNGT	4 cut(s)	493, 890, 941, 1019
TaqI	TCGA	6 cut(s)	115, 540, 669, 695, 714, 848
TasI	AATT	3 cut(s)	388, 627, 728
TatI	WGTACW	1 cut(s)	1014
TfiI	GAWTC	3 cut(s)	66, 148, 768
Tru1I	TTAA	4 cut(s)	57, 336, 387, 987
Tru9I	TTAA	4 cut(s)	57, 336, 387, 987
TscAI	CASTG	5 cut(s)	109, 445, 496, 910, 1024
TseFI	GTSAC	2 cut(s)	35, 554
TseI	GCWGC	2 cut(s)	818, 975
Tsp45I	GTSAC	2 cut(s)	35, 554
TspDTI	ATGAA	7 cut(s)	161, 189, 590, 741, 869, 995, 1110
TspGWI	ACGGA	3 cut(s)	278, 524, 753
TspRI	CASTG	5 cut(s)	109, 445, 496, 910, 1024
VpaK11BI	GGWCC	2 cut(s)	880, 1103
XceI	RCATGY	2 cut(s)	527, 604
XmiI	GTMKAC	2 cut(s)	115, 669
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.