Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008204

Physical Location & Seq

Genomic Coordinates Forward (+)

17560211 .. 17561945

Gene Structure 1735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G42100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGTCGGATCTAGGTGACGAATCCGTGGCTATCGTGTGTGACAATGGAACTGGAATGGTCAAGGCGGGATTCGCTGGAGACGATGCACCAAGAGCTGTGTTTCCAAGCGTTGTGGGTCGTCCACGACACAGGGGAGTGATGGTAGGAATGGATGAGAAGGATACCTTTGTGGGAGACGAAGCTCAAGCCAGGAGAGGTATTCTTTCACTTAAATACCCAATCGAACACGGTGTTGTTAGCAATTGGGATGACATGGAGAAGATTTGGCACCATACTTTTTACAATGAGCTGCGTTTGGAACCTGAAGAACACCCTATTCTTCTCACTGAAGCTCCTCTTAACCCAAAGGTCAATCGTGAAAAGATGACTCAGATCATGTTTGAGTCATTTGCTTTTCCTAGTATGTATATTGGTATTCAGGCCGTTCTCTCTCTCTATTCCAGTGGTCGTACCACAGGTATTGTGTTGGATTCAGGAGATGGTGTGAGCCACACAGTTCCAATCTACGAAGGTTATGCACTCCCGCATGCGATCTTGCGTCTAGATCTAGCAGGCCGTGACCTAACCGAGTATCTGACGAAAATCATGATGGAACGTGGCTACACATACACCACATCCGCCGAGCGTGAGATAGTCCGAGACATCAAAGAGAAGCTTTGTTACATAGCTGTTGACTACGAGCAAGAAATGGAGAAGGCTACAACGAGCTCGGCAATCGATAGAACCTACGAGCTTCCGGATGGTCAAGTGATCACGATAGGAGCTGAGAGATTCAGGTGCCCTGAGGTTCTTTTCCAGACGTCTTTGATTGGCATGGAAACTTCTGGTATTCATGAGACGACTTACAATTCGATCATGAAGTGTGATGTGGATATAAGGAAGGATTTGTATGGAAACATTGTGTTGAGTGGTGGCACGACGATGTTCCCGGGGATTGCAGATAGGATGAACAAAGAGATCAATGCGCTTGCACCGCCTAGTATGAAGATAAAAGTTGTGGCTCCTCCCGAAAGGAAATATAGTGTTTGGGTTGGAGGCTCCATTCTGGCTTCTCTAAGCAGCTTTGCACCGATGTGGATTACTAAAGCTGAGTATGACGAACAGGGAGGGGCGATTGTTCACAGGAAATGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005198 GO:0005200 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009642 GO:0009644 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009888 GO:0009932 GO:0009941 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010114 GO:0010218 GO:0016020 GO:0016043 GO:0016049 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048869 GO:0050896 GO:0055044 GO:0060560 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

378

Amino Acids

42.12

Weight (kDa)

5.18

Isoelectric Point (pI)

30.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	5 - 378	6.8e-142	Actin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49240 AT2G42090 AT2G42100 AT2G42170 AT2G42170 AT2G42170 AT3G18780 AT3G18780 AT3G18780
fragaria_vesca	FvH4_5g10190
malus_domestica	MD06G1127300.v1.1 MD14G1142600.v1.1
prunus_persica	Prupe.5G137100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0188051
rosa_laevigata	RLG00000004731
rosa_roxburghii	Rroxscaffold_3G00266780
rosa_rugosa	Rorug06G0487700 Rorug06G0487800
rosa_samantha	Rh7AG092100 Rh7BG093700 Rh7CG093000 Rh7DG094200
rosa_wichuraiana	Rw7G007960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	803
AccB1I	GGYRCC	2 cut(s)	267, 777
AccIII	TCCGGA	1 cut(s)	736
AciI	CCGC	4 cut(s)	65, 524, 618, 974
AclWI	GGATC	1 cut(s)	15
AcuI	CTGAAG	2 cut(s)	324, 348
AcyI	GRCGYC	1 cut(s)	800
AfaI	GTAC	1 cut(s)	451
AjnI	CCWGG	1 cut(s)	188
AleI	CACNNNNGTG	1 cut(s)	1072
Alw21I	GWGCWC	1 cut(s)	710
Alw26I	GTCTC	4 cut(s)	72, 168, 633, 830
AlwI	GGATC	1 cut(s)	15
Ama87I	CYCGRG	1 cut(s)	928
Aor13HI	TCCGGA	1 cut(s)	736
AoxI	GGCC	2 cut(s)	420, 553
ApeKI	GCWGC	2 cut(s)	289, 1059
ArsI	GACNNNNNNTTYG	2 cut(s)	832, 864
AspLEI	GCGC	1 cut(s)	967
AsuC2I	CCSGG	2 cut(s)	929, 930
AsuHPI	GGTGA	1 cut(s)	26
AvaI	CYCGRG	1 cut(s)	928
AxyI	CCTNAGG	1 cut(s)	783
BaeGI	GKGCMC	1 cut(s)	782
BaeI	ACNNNNGTAYC	2 cut(s)	153, 186
BanI	GGYRCC	2 cut(s)	267, 777
BanII	GRGCYC	1 cut(s)	710
BarI	GAAGNNNNNNTAC	2 cut(s)	644, 676
Bbv12I	GWGCWC	1 cut(s)	710
BbvI	GCAGC	2 cut(s)	276, 1071
BccI	CCATC	4 cut(s)	133, 473, 583, 734
BceAI	ACGGC	2 cut(s)	407, 540
BcgI	CGANNNNNNTGC	2 cut(s)	497, 531
BciT130I	CCWGG	1 cut(s)	190
BciVI	GTATCC	1 cut(s)	154
BclI	TGATCA	1 cut(s)	750
BcnI	CCSGG	2 cut(s)	929, 930
BcoDI	GTCTC	4 cut(s)	72, 168, 633, 830
BfaI	CTAG	5 cut(s)	11, 399, 542, 548, 978
BfuI	GTATCC	1 cut(s)	154
BglII	AGATCT	1 cut(s)	544
BisI	GCNGC	2 cut(s)	290, 1060
BlsI	GCNGC	2 cut(s)	291, 1061
Bme1390I	CCNGG	3 cut(s)	190, 929, 930
BmeT110I	CYCGRG	1 cut(s)	928
BmiI	GGNNCC	5 cut(s)	269, 300, 779, 1002, 1039
BmrFI	CCNGG	3 cut(s)	190, 929, 930
BmsI	GCATC	1 cut(s)	73
BpmI	CTGGAG	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	168
BpuMI	CCSGG	2 cut(s)	929, 930
Bsa29I	ATCGAT	1 cut(s)	717
BsaHI	GRCGYC	1 cut(s)	800
BsaJI	CCNNGG	3 cut(s)	24, 928, 929
BsaWI	WCCGGW	1 cut(s)	736
BsaXI	ACNNNNNCTCC	6 cut(s)	126, 156, 316, 346, 468, 498
Bse1I	ACTGG	2 cut(s)	55, 441
Bse21I	CCTNAGG	1 cut(s)	783
BseAI	TCCGGA	1 cut(s)	736
BseBI	CCWGG	1 cut(s)	190
BseCI	ATCGAT	1 cut(s)	717
BseDI	CCNNGG	3 cut(s)	24, 928, 929
BseGI	GGATG	5 cut(s)	157, 253, 614, 745, 951
BseMII	CTCAG	4 cut(s)	383, 756, 774, 1080
BseNI	ACTGG	2 cut(s)	55, 441
BseRI	GAGGAG	2 cut(s)	324, 993
BseSI	GKGCMC	1 cut(s)	782
BseXI	GCAGC	2 cut(s)	276, 1071
BshFI	GGCC	2 cut(s)	422, 555
BshNI	GGYRCC	2 cut(s)	267, 777
BshVI	ATCGAT	1 cut(s)	717
BsiHKAI	GWGCWC	1 cut(s)	710
BsiHKCI	CYCGRG	1 cut(s)	928
BsiSI	CCGG	2 cut(s)	737, 929
BsmAI	GTCTC	4 cut(s)	72, 168, 633, 830
BsmBI	CGTCTC	3 cut(s)	72, 168, 830
BsnI	GGCC	2 cut(s)	422, 555
BsoBI	CYCGRG	1 cut(s)	928
Bsp1286I	GDGCHC	2 cut(s)	710, 782
Bsp13I	TCCGGA	1 cut(s)	736
Bsp143I	GATC	7 cut(s)	7, 372, 531, 544, 750, 852, 957
BspACI	CCGC	4 cut(s)	65, 524, 618, 974
BspANI	GGCC	2 cut(s)	422, 555
BspCNI	CTCAG	4 cut(s)	382, 757, 775, 1081
BspDI	ATCGAT	1 cut(s)	717
BspEI	TCCGGA	1 cut(s)	736
BspHI	TCATGA	3 cut(s)	585, 832, 855
BspLI	GGNNCC	5 cut(s)	269, 300, 779, 1002, 1039
BspPI	GGATC	1 cut(s)	15
BspT107I	GGYRCC	2 cut(s)	267, 777
BsrI	ACTGG	2 cut(s)	55, 441
BssECI	CCNNGG	3 cut(s)	24, 928, 929
BssMI	GATC	7 cut(s)	7, 372, 531, 544, 750, 852, 957
BssNI	GRCGYC	1 cut(s)	800
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	230, 496
BstACI	GRCGYC	1 cut(s)	800
BstC8I	GCNNGC	3 cut(s)	528, 553, 969
BstDEI	CTNAG	5 cut(s)	369, 765, 783, 1055, 1089
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	5 cut(s)	157, 253, 614, 745, 951
BstHHI	GCGC	1 cut(s)	967
BstKTI	GATC	7 cut(s)	10, 375, 534, 547, 753, 855, 960
BstMAI	GTCTC	4 cut(s)	72, 168, 633, 830
BstMBI	GATC	7 cut(s)	7, 372, 531, 544, 750, 852, 957
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 92, 973
BstNI	CCWGG	1 cut(s)	190
BstNSI	RCATGY	1 cut(s)	530
BstSCI	CCNGG	3 cut(s)	188, 927, 928
BstSLI	GKGCMC	1 cut(s)	782
BstV1I	GCAGC	2 cut(s)	276, 1071
BstX2I	RGATCY	2 cut(s)	7, 544
BstYI	RGATCY	2 cut(s)	7, 544
Bsu15I	ATCGAT	1 cut(s)	717
Bsu36I	CCTNAGG	1 cut(s)	783
BsuI	GTATCC	1 cut(s)	154
BsuRI	GGCC	2 cut(s)	422, 555
BsuTUI	ATCGAT	1 cut(s)	717
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	5 cut(s)	157, 253, 614, 745, 951
BtsIMutI	CAGTG	2 cut(s)	324, 448
Cac8I	GCNNGC	3 cut(s)	528, 553, 969
CciI	TCATGA	3 cut(s)	585, 832, 855
CfoI	GCGC	1 cut(s)	967
Cfr9I	CCCGGG	1 cut(s)	928
ClaI	ATCGAT	1 cut(s)	717
CseI	GACGC	1 cut(s)	527
Csp6I	GTAC	1 cut(s)	450
CspCI	CAANNNNNGTGG	4 cut(s)	93, 128, 442, 477
CviAII	CATG	7 cut(s)	253, 376, 527, 586, 814, 833, 856
CviQI	GTAC	1 cut(s)	450
DdeI	CTNAG	5 cut(s)	369, 765, 783, 1055, 1089
DpnI	GATC	7 cut(s)	9, 374, 533, 546, 752, 854, 959
DpnII	GATC	7 cut(s)	7, 372, 531, 544, 750, 852, 957
EciI	GGCGGA	1 cut(s)	607
Ecl136II	GAGCTC	1 cut(s)	708
Eco24I	GRGCYC	1 cut(s)	710
Eco53kI	GAGCTC	1 cut(s)	708
Eco57I	CTGAAG	2 cut(s)	324, 348
Eco81I	CCTNAGG	1 cut(s)	783
Eco88I	CYCGRG	1 cut(s)	928
EcoICRI	GAGCTC	1 cut(s)	708
EcoRII	CCWGG	1 cut(s)	188
EcoT38I	GRGCYC	1 cut(s)	710
Esp3I	CGTCTC	3 cut(s)	72, 168, 830
FaeI	CATG	7 cut(s)	256, 379, 530, 589, 817, 836, 859
FalI	AAGNNNNNCTT	6 cut(s)	149, 181, 321, 353, 639, 671
FatI	CATG	7 cut(s)	252, 375, 526, 585, 813, 832, 855
FauI	CCCGC	2 cut(s)	58, 531
FbaI	TGATCA	1 cut(s)	750
Fnu4HI	GCNGC	2 cut(s)	290, 1060
FokI	GGATG	5 cut(s)	164, 260, 601, 752, 958
FriOI	GRGCYC	1 cut(s)	710
Fsp4HI	GCNGC	2 cut(s)	290, 1060
FspBI	CTAG	5 cut(s)	11, 399, 542, 548, 978
GlaI	GCGC	1 cut(s)	966
GluI	GCNGC	2 cut(s)	290, 1060
GsuI	CTGGAG	1 cut(s)	96
HaeIII	GGCC	2 cut(s)	422, 555
HapII	CCGG	2 cut(s)	737, 929
HgaI	GACGC	1 cut(s)	527
HhaI	GCGC	1 cut(s)	967
Hin1I	GRCGYC	1 cut(s)	800
Hin1II	CATG	7 cut(s)	256, 379, 530, 589, 817, 836, 859
Hin6I	GCGC	1 cut(s)	965
HinP1I	GCGC	1 cut(s)	965
HincII	GTYRAC	1 cut(s)	673
HindII	GTYRAC	1 cut(s)	673
HindIII	AAGCTT	1 cut(s)	653
HinfI	GANTC	6 cut(s)	20, 69, 367, 383, 470, 771
HpaII	CCGG	2 cut(s)	737, 929
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	3 cut(s)	122, 673, 1120
Hpy188I	TCNGA	4 cut(s)	7, 372, 576, 638
Hpy8I	GTNNAC	3 cut(s)	122, 673, 1120
Hpy99I	CGWCG	1 cut(s)	922
HpyAV	CCTTC	4 cut(s)	151, 503, 688, 874
HpyCH4III	ACNGT	2 cut(s)	230, 496
HpyCH4IV	ACGT	2 cut(s)	595, 800
HpyCH4V	TGCA	5 cut(s)	86, 518, 938, 971, 1067
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 92, 973
HpyF3I	CTNAG	5 cut(s)	369, 765, 783, 1055, 1089
HpySE526I	ACGT	2 cut(s)	595, 800
Hsp92I	GRCGYC	1 cut(s)	800
Hsp92II	CATG	7 cut(s)	256, 379, 530, 589, 817, 836, 859
HspAI	GCGC	1 cut(s)	965
Kpn2I	TCCGGA	1 cut(s)	736
Ksp22I	TGATCA	1 cut(s)	750
Kzo9I	GATC	7 cut(s)	7, 372, 531, 544, 750, 852, 957
LmnI	GCTCC	4 cut(s)	337, 761, 1006, 1043
Lsp1109I	GCAGC	2 cut(s)	276, 1071
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	5 cut(s)	11, 399, 542, 548, 978
MaeII	ACGT	2 cut(s)	595, 800
MaeIII	GTNAC	4 cut(s)	14, 38, 557, 659
MalI	GATC	7 cut(s)	9, 374, 533, 546, 752, 854, 959
MboI	GATC	7 cut(s)	7, 372, 531, 544, 750, 852, 957
MboII	GAAGA	4 cut(s)	271, 311, 317, 997
MfeI	CAATTG	1 cut(s)	241
MflI	RGATCY	2 cut(s)	7, 544
MhlI	GDGCHC	2 cut(s)	710, 782
MluCI	AATT	2 cut(s)	241, 847
MlyI	GAGTC	2 cut(s)	361, 392
MmeI	TCCRAC	2 cut(s)	447, 1012
MnlI	CCTC	6 cut(s)	188, 345, 778, 1014, 1028, 1100
MroI	TCCGGA	1 cut(s)	736
MseI	TTAA	3 cut(s)	210, 339, 1135
MslI	CAYNNNNRTG	2 cut(s)	920, 1072
MspI	CCGG	2 cut(s)	737, 929
MspR9I	CCNGG	3 cut(s)	190, 929, 930
MunI	CAATTG	1 cut(s)	241
MvaI	CCWGG	1 cut(s)	190
MwoI	GCNNNNNNNGC	3 cut(s)	71, 92, 973
NciI	CCSGG	2 cut(s)	929, 930
NdeII	GATC	7 cut(s)	7, 372, 531, 544, 750, 852, 957
NlaIII	CATG	7 cut(s)	256, 379, 530, 589, 817, 836, 859
NlaIV	GGNNCC	5 cut(s)	269, 300, 779, 1002, 1039
NmeAIII	GCCGAG	2 cut(s)	646, 689
NmuCI	GTSAC	3 cut(s)	14, 38, 557
NspI	RCATGY	1 cut(s)	530
OliI	CACNNNNGTG	1 cut(s)	1072
PaeI	GCATGC	1 cut(s)	530
PagI	TCATGA	3 cut(s)	585, 832, 855
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PfeI	GAWTC	4 cut(s)	20, 69, 470, 771
PkrI	GCNGC	2 cut(s)	291, 1061
PleI	GAGTC	2 cut(s)	361, 391
PpsI	GAGTC	2 cut(s)	361, 391
Psp124BI	GAGCTC	1 cut(s)	710
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	5 cut(s)	269, 300, 779, 1002, 1039
PsuI	RGATCY	2 cut(s)	7, 544
RsaI	GTAC	1 cut(s)	451
RsaNI	GTAC	1 cut(s)	450
RseI	CAYNNNNRTG	2 cut(s)	920, 1072
SacI	GAGCTC	1 cut(s)	710
SaqAI	TTAA	3 cut(s)	210, 339, 1135
SatI	GCNGC	2 cut(s)	290, 1060
Sau3AI	GATC	7 cut(s)	7, 372, 531, 544, 750, 852, 957
SchI	GAGTC	2 cut(s)	361, 392
ScrFI	CCNGG	3 cut(s)	190, 929, 930
SduI	GDGCHC	2 cut(s)	710, 782
SfaNI	GCATC	1 cut(s)	73
SmaI	CCCGGG	1 cut(s)	930
SmiMI	CAYNNNNRTG	2 cut(s)	920, 1072
SmlI	CTYRAG	1 cut(s)	183
SmoI	CTYRAG	1 cut(s)	183
SphI	GCATGC	1 cut(s)	530
Sse9I	AATT	2 cut(s)	241, 847
SsiI	CCGC	4 cut(s)	65, 524, 618, 974
SspMI	CTAG	5 cut(s)	11, 399, 542, 548, 978
SstI	GAGCTC	1 cut(s)	710
StyD4I	CCNGG	3 cut(s)	188, 927, 928
TaaI	ACNGT	2 cut(s)	230, 496
TaiI	ACGT	2 cut(s)	598, 803
TaqI	TCGA	3 cut(s)	222, 717, 851
TasI	AATT	2 cut(s)	241, 847
TfiI	GAWTC	4 cut(s)	20, 69, 470, 771
Tru1I	TTAA	3 cut(s)	210, 339, 1135
Tru9I	TTAA	3 cut(s)	210, 339, 1135
TscAI	CASTG	2 cut(s)	331, 448
TseFI	GTSAC	3 cut(s)	14, 38, 557
TseI	GCWGC	2 cut(s)	289, 1059
Tsp45I	GTSAC	3 cut(s)	14, 38, 557
TspDTI	ATGAA	4 cut(s)	821, 872, 962, 998
TspGWI	ACGGA	1 cut(s)	13
TspMI	CCCGGG	1 cut(s)	928
TspRI	CASTG	2 cut(s)	331, 448
XbaI	TCTAGA	1 cut(s)	541
XceI	RCATGY	1 cut(s)	530
XmaI	CCCGGG	1 cut(s)	928
XspI	CTAG	5 cut(s)	11, 399, 542, 548, 978
ZraI	GACGTC	1 cut(s)	801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.