Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008204

Physical Location & Seq

Genomic Coordinates Forward (+)

17556744 .. 17558369

Gene Structure 1626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G42090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGAAGCCTATCGTGTGTGACAAGGGACATGGAATGGTGCAGGCGGGATTTGCTGGAGACGAAGCACCAAAGGTTGTGTTTCCATGTGTCGTGGGTCGTCCAAGAGATGGATTGAATCCGAACGAATCTTATGTGGGAGAAGAAGGTCATGCCAACAGAGATATTCTCACACTTAAAGACCCAATGGAGCATGGTATCGTTAACAATTGGGATGACATGGAGAAGATTTGGCACTATACTTTCTACAACGAGCTACGTGTGGATCCTGAAGAACACCCTGTACTTCTCACTGAAGCTCCTTATAACCCTAAAGCCAATCGTGAGAAAATGACTCAGATCATGTTTGAGAGCTTTGATGTTCCTGCTATGTACGTCTCCATGCAATCTGTTCTTTATCTCTATTCCAGTGGTCGTACCACAGGTGTTGTGTTGGATTTAGGAGAGAGGGTGAGCCACACAGTTCCAGTATACGAAGGTTACGCACTCCCACACGGTATACTTCGTCTAGACCTTGGAGGCCGTGACCTAACTGACTACCTCATAGAAATCATGACCGAACGTGGCTACACATACACCACATCCGCCGAGCGGGAAATAGTCCGAGACATCAAAGAGAAGCTTTGTTACGTAGCACTCGACTACGAGCAAGAAATGGAGAAGACAACAAAGGGTTGGACAATCGATAAAACCTACGTGCTTCCCGATGGTCAAGAGATCACGATAGAAGCCGAGAGATTCATGTGCCCCGAGGTTCTTTTCCAGCCGTCTGTGATCGGAAAGGAATCTTCTGGTATTCACGAGGCGACTCGCAATTCCATCTTGAAGTGTCCTGTTGATACGAGGAGGGATATGTATGGTAACATTTTGATGACTGGTGGCACGACGATGTTACATGGGATTAAAGAAAGAATGACCAAAGAGCTAAATGCACTTGTACCGTCGAGTATGAAAGTTAAAGTTGTAGTTCCTCCGGAAAGTGAGTGTAGTGTTTGGATTGGAGGCTCCATTTTGGCTTCTCTAAGCACCTTTCACCAGATGTGGATAACTAAGGATGAATATGAAGAACATGGAGCGGCGATTGTTCACAGAAAATGCGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005198 GO:0005200 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009642 GO:0009644 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009888 GO:0009932 GO:0009941 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010114 GO:0010218 GO:0016020 GO:0016043 GO:0016049 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048869 GO:0050896 GO:0055044 GO:0060560 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

366

Amino Acids

41.42

Weight (kDa)

5.19

Isoelectric Point (pI)

37.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	2 - 365	9.6e-133	Actin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49240 AT2G42090 AT2G42100 AT2G42170 AT2G42170 AT2G42170 AT3G18780 AT3G18780 AT3G18780
fragaria_vesca	FvH4_5g10190
malus_domestica	MD06G1127300.v1.1 MD14G1142600.v1.1
prunus_persica	Prupe.5G137100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0188051
rosa_laevigata	RLG00000004731
rosa_roxburghii	Rroxscaffold_3G00266780
rosa_rugosa	Rorug06G0487700 Rorug06G0487800
rosa_samantha	Rh7AG092100 Rh7BG093700 Rh7CG093000 Rh7DG094200
rosa_wichuraiana	Rw7G007960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	303
AccB7I	CCANNNNNTGG	1 cut(s)	107
AccBSI	CCGCTC	2 cut(s)	589, 1073
AccI	GTMKAC	2 cut(s)	468, 496
AccIII	TCCGGA	1 cut(s)	970
AciI	CCGC	4 cut(s)	44, 582, 589, 1073
AclWI	GGATC	2 cut(s)	257, 270
AcuI	CTGAAG	2 cut(s)	288, 312
AfaI	GTAC	4 cut(s)	282, 371, 415, 936
AfiI	CCNNNNNNNGG	2 cut(s)	107, 588
AflIII	ACRYGT	1 cut(s)	256
AgsI	TTSAA	2 cut(s)	115, 823
AluBI	AGCT	5 cut(s)	253, 296, 351, 619, 922
AluI	AGCT	5 cut(s)	253, 296, 351, 619, 922
Alw26I	GTCTC	3 cut(s)	51, 379, 597
AlwI	GGATC	2 cut(s)	257, 270
Ama87I	CYCGRG	1 cut(s)	746
Aor13HI	TCCGGA	1 cut(s)	970
AoxI	GGCC	1 cut(s)	517
AsuHPI	GGTGA	2 cut(s)	460, 1022
AvaI	CYCGRG	1 cut(s)	746
BaeGI	GKGCMC	1 cut(s)	746
BamHI	GGATCC	1 cut(s)	262
BarI	GAAGNNNNNNTAC	2 cut(s)	608, 640
BauI	CACGAG	1 cut(s)	797
BbsI	GAAGAC	1 cut(s)	665
BccI	CCATC	3 cut(s)	101, 698, 824
BceAI	ACGGC	2 cut(s)	504, 748
BcoDI	GTCTC	3 cut(s)	51, 379, 597
BfaI	CTAG	1 cut(s)	506
BisI	GCNGC	1 cut(s)	1074
BlsI	GCNGC	1 cut(s)	1075
BmeT110I	CYCGRG	1 cut(s)	746
BmiI	GGNNCC	2 cut(s)	264, 1003
BpiI	GAAGAC	1 cut(s)	665
BplI	GAGNNNNNCTC	2 cut(s)	150, 182
BpmI	CTGGAG	1 cut(s)	75
Bsa29I	ATCGAT	1 cut(s)	681
BsaAI	YACGTR	3 cut(s)	257, 628, 694
BsaJI	CCNNGG	2 cut(s)	511, 747
BsaWI	WCCGGW	1 cut(s)	970
BsaXI	ACNNNNNCTCC	4 cut(s)	280, 310, 432, 462
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 588
Bse1I	ACTGG	3 cut(s)	405, 464, 877
BseAI	TCCGGA	1 cut(s)	970
BseCI	ATCGAT	1 cut(s)	681
BseDI	CCNNGG	2 cut(s)	511, 747
BseGI	GGATG	3 cut(s)	217, 578, 1057
BseLI	CCNNNNNNNGG	2 cut(s)	107, 588
BseMII	CTCAG	1 cut(s)	347
BseNI	ACTGG	3 cut(s)	405, 464, 877
BseRI	GAGGAG	1 cut(s)	856
BseSI	GKGCMC	1 cut(s)	746
BsgI	GTGCAG	1 cut(s)	59
BshFI	GGCC	1 cut(s)	519
BshVI	ATCGAT	1 cut(s)	681
BsiHKCI	CYCGRG	1 cut(s)	746
BsiSI	CCGG	1 cut(s)	971
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	2 cut(s)	107, 588
BsmAI	GTCTC	3 cut(s)	51, 379, 597
BsmBI	CGTCTC	2 cut(s)	51, 379
BsmFI	GGGAC	1 cut(s)	39
BsnI	GGCC	1 cut(s)	519
BsoBI	CYCGRG	1 cut(s)	746
Bsp1286I	GDGCHC	1 cut(s)	746
Bsp13I	TCCGGA	1 cut(s)	970
Bsp143I	GATC	4 cut(s)	262, 336, 714, 771
BspACI	CCGC	4 cut(s)	44, 582, 589, 1073
BspANI	GGCC	1 cut(s)	519
BspCNI	CTCAG	1 cut(s)	346
BspDI	ATCGAT	1 cut(s)	681
BspEI	TCCGGA	1 cut(s)	970
BspHI	TCATGA	1 cut(s)	549
BspLI	GGNNCC	2 cut(s)	264, 1003
BspPI	GGATC	2 cut(s)	257, 270
BsrBI	CCGCTC	2 cut(s)	589, 1073
BsrI	ACTGG	3 cut(s)	405, 464, 877
BssECI	CCNNGG	2 cut(s)	511, 747
BssMI	GATC	4 cut(s)	262, 336, 714, 771
BssNAI	GTATAC	2 cut(s)	469, 497
BssSI	CACGAG	1 cut(s)	797
BssT1I	CCWWGG	1 cut(s)	511
Bst1107I	GTATAC	2 cut(s)	469, 497
Bst2BI	CACGAG	1 cut(s)	797
Bst4CI	ACNGT	3 cut(s)	460, 494, 939
BstBAI	YACGTR	3 cut(s)	257, 628, 694
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	3 cut(s)	333, 1019, 1047
BstF5I	GGATG	3 cut(s)	217, 578, 1057
BstKTI	GATC	4 cut(s)	265, 339, 717, 774
BstMAI	GTCTC	3 cut(s)	51, 379, 597
BstMBI	GATC	4 cut(s)	262, 336, 714, 771
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstSLI	GKGCMC	1 cut(s)	746
BstSNI	TACGTA	1 cut(s)	628
BstV2I	GAAGAC	1 cut(s)	665
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BstZ17I	GTATAC	2 cut(s)	469, 497
Bsu15I	ATCGAT	1 cut(s)	681
BsuRI	GGCC	1 cut(s)	519
BsuTUI	ATCGAT	1 cut(s)	681
BtsCI	GGATG	3 cut(s)	217, 578, 1057
BtsIMutI	CAGTG	2 cut(s)	288, 412
Cac8I	GCNNGC	1 cut(s)	42
CciI	TCATGA	1 cut(s)	549
ClaI	ATCGAT	1 cut(s)	681
CseI	GACGC	1 cut(s)	1084
Csp6I	GTAC	4 cut(s)	281, 370, 414, 935
CspCI	CAANNNNNGTGG	2 cut(s)	406, 441
CviQI	GTAC	4 cut(s)	281, 370, 414, 935
DdeI	CTNAG	3 cut(s)	333, 1019, 1047
DpnI	GATC	4 cut(s)	264, 338, 716, 773
DpnII	GATC	4 cut(s)	262, 336, 714, 771
EciI	GGCGGA	1 cut(s)	571
Eco105I	TACGTA	1 cut(s)	628
Eco130I	CCWWGG	1 cut(s)	511
Eco57I	CTGAAG	2 cut(s)	288, 312
Eco88I	CYCGRG	1 cut(s)	746
EcoT14I	CCWWGG	1 cut(s)	511
ErhI	CCWWGG	1 cut(s)	511
Esp3I	CGTCTC	2 cut(s)	51, 379
FalI	AAGNNNNNCTT	2 cut(s)	603, 635
FaqI	GGGAC	1 cut(s)	39
FauI	CCCGC	2 cut(s)	37, 582
FblI	GTMKAC	2 cut(s)	468, 496
Fnu4HI	GCNGC	1 cut(s)	1074
FokI	GGATG	3 cut(s)	224, 565, 1064
Fsp4HI	GCNGC	1 cut(s)	1074
FspBI	CTAG	1 cut(s)	506
GluI	GCNGC	1 cut(s)	1074
GsuI	CTGGAG	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	519
HapII	CCGG	1 cut(s)	971
HgaI	GACGC	1 cut(s)	1084
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	617
HinfI	GANTC	6 cut(s)	115, 125, 331, 735, 782, 805
HpaI	GTTAAC	1 cut(s)	202
HpaII	CCGG	1 cut(s)	971
HphI	GGTGA	2 cut(s)	460, 1022
Hpy166II	GTNNAC	4 cut(s)	202, 469, 497, 1084
Hpy188I	TCNGA	4 cut(s)	120, 336, 602, 776
Hpy8I	GTNNAC	4 cut(s)	202, 469, 497, 1084
Hpy99I	CGWCG	2 cut(s)	886, 943
HpyAV	CCTTC	2 cut(s)	137, 467
HpyCH4III	ACNGT	3 cut(s)	460, 494, 939
HpyCH4IV	ACGT	5 cut(s)	256, 372, 559, 627, 693
HpyCH4V	TGCA	3 cut(s)	40, 382, 929
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	3 cut(s)	333, 1019, 1047
HpySE526I	ACGT	5 cut(s)	256, 372, 559, 627, 693
Kpn2I	TCCGGA	1 cut(s)	970
KspAI	GTTAAC	1 cut(s)	202
Kzo9I	GATC	4 cut(s)	262, 336, 714, 771
LmnI	GCTCC	4 cut(s)	187, 301, 1007, 1070
MaeI	CTAG	1 cut(s)	506
MaeII	ACGT	5 cut(s)	256, 372, 559, 627, 693
MaeIII	GTNAC	6 cut(s)	17, 476, 521, 623, 857, 888
MalI	GATC	4 cut(s)	264, 338, 716, 773
MbiI	CCGCTC	2 cut(s)	589, 1073
MboI	GATC	4 cut(s)	262, 336, 714, 771
MboII	GAAGA	6 cut(s)	152, 235, 281, 670, 777, 1073
MfeI	CAATTG	1 cut(s)	205
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	1 cut(s)	746
MluCI	AATT	2 cut(s)	205, 811
MlyI	GAGTC	2 cut(s)	325, 799
MmeI	TCCRAC	2 cut(s)	411, 653
MnlI	CCTC	9 cut(s)	438, 509, 548, 742, 793, 834, 837, 978, 992
MroI	TCCGGA	1 cut(s)	970
MseI	TTAA	4 cut(s)	174, 201, 900, 954
MslI	CAYNNNNRTG	2 cut(s)	866, 884
MspI	CCGG	1 cut(s)	971
MunI	CAATTG	1 cut(s)	205
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	4 cut(s)	262, 336, 714, 771
NlaIV	GGNNCC	2 cut(s)	264, 1003
NmeAIII	GCCGAG	2 cut(s)	610, 754
NmuCI	GTSAC	2 cut(s)	17, 521
PagI	TCATGA	1 cut(s)	549
PcsI	WCGNNNNNNNCGW	2 cut(s)	633, 699
PfeI	GAWTC	4 cut(s)	115, 125, 735, 782
PflMI	CCANNNNNTGG	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	1075
PleI	GAGTC	2 cut(s)	325, 799
PpsI	GAGTC	2 cut(s)	325, 799
Ppu21I	YACGTR	3 cut(s)	257, 628, 694
PsiI	TTATAA	1 cut(s)	303
PspN4I	GGNNCC	2 cut(s)	264, 1003
PsrI	GAACNNNNNNTAC	2 cut(s)	264, 296
PsuI	RGATCY	1 cut(s)	262
RsaI	GTAC	4 cut(s)	282, 371, 415, 936
RsaNI	GTAC	4 cut(s)	281, 370, 414, 935
RseI	CAYNNNNRTG	2 cut(s)	866, 884
SaqAI	TTAA	4 cut(s)	174, 201, 900, 954
SatI	GCNGC	1 cut(s)	1074
Sau3AI	GATC	4 cut(s)	262, 336, 714, 771
SchI	GAGTC	2 cut(s)	325, 799
SduI	GDGCHC	1 cut(s)	746
SmiMI	CAYNNNNRTG	2 cut(s)	866, 884
SnaBI	TACGTA	1 cut(s)	628
Sse9I	AATT	2 cut(s)	205, 811
SsiI	CCGC	4 cut(s)	44, 582, 589, 1073
SspMI	CTAG	1 cut(s)	506
StyI	CCWWGG	1 cut(s)	511
TaaI	ACNGT	3 cut(s)	460, 494, 939
TaiI	ACGT	5 cut(s)	259, 375, 562, 630, 696
TaqI	TCGA	3 cut(s)	636, 681, 941
TaqII	GACCGA	1 cut(s)	569
TasI	AATT	2 cut(s)	205, 811
TatI	WGTACW	1 cut(s)	280
TauI	GCSGC	1 cut(s)	1076
TfiI	GAWTC	4 cut(s)	115, 125, 735, 782
Tru1I	TTAA	4 cut(s)	174, 201, 900, 954
Tru9I	TTAA	4 cut(s)	174, 201, 900, 954
TscAI	CASTG	2 cut(s)	295, 412
TseFI	GTSAC	2 cut(s)	17, 521
Tsp45I	GTSAC	2 cut(s)	17, 521
TspDTI	ATGAA	5 cut(s)	17, 727, 962, 1068, 1074
TspRI	CASTG	2 cut(s)	295, 412
Van91I	CCANNNNNTGG	1 cut(s)	107
XbaI	TCTAGA	1 cut(s)	505
XmiI	GTMKAC	2 cut(s)	468, 496
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.