Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008204

Physical Location & Seq

Genomic Coordinates Forward (+)

60643486 .. 60645193

Gene Structure 1708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0487800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGAACTCGGGCTCGTCACGAAGGCCTTGCATCGAAGAAAGAAATGGCTTCTGATACTCGCGGCCCTCGGCGCGTCCGGTTACGGCGCCTACAGGGTTTACAGTTCGCCCTCTTTGGTCCAGAAGCGAAAGAGGTTCATCAAGGTCGTCGGAGCCCTAATTTCTATGGCGGAGATGGCGTCTGATTCGGCCGAGACCGTCAGCATTGTCTCCAACGACTTGAAGGAGTTTCTGAACTCCGGTTCCGACGAAATGCCCAAAAGTCTGAAGCAGATTTCCAAGATTGCGAGGTCGGAGGAGTTCTCTGCGTCGTTGCAGAGGTTGACGGAGGCTATGGCGATCGGGGTATGCCGAGGGTTTGAGTTTGAGACGGGGAATGGGGGTTTGGGGAATTCGAGCTATTCAGAGAGAGTTATGGAGAAGGTTTTCTCTGAAGCCGGGACCGGGTTCGCTTCGGTTGTAGTTGGAAGCTTTGCAAGGAATATGGTTATGGGGTTTTACTCAAATGAGCATTCAGGTCAGGATTCGAGTTCTTCGGATGTGAATAGATGGGTCGATGCGGTTTGTAGTGATCCAAGTAAGGAGCTGATAGCGAATTGCATACAGGTTTTCGTGTCTACTGCGGTTGCGGCGTACCTAGACAAAACAAAGGATGTCAATTTCTGTGATGACATGTTTGGTGGAATGACCAATCCCAAGCATCAGGAGAAGGTCAGGGAGCTCTTGGTTTCTGTTTGCAATGGTGCTGTGGAGACTGTTGTGAAAACTTCTCATCAAGTTTTGACGAGTTCTGGTTCGAATCCGAGCTCAAATTCGGGGACTTGGTCAGTTGTTGAAGGTGTGAGTGGAGCTAGGGATGAGTGCCTTGAGCAAGAAGCAAAGCAGCCGAAGGAGGGAAGTTCACTTGAGGCTATTCAGAATAGCGAGTGGATTGGAAAGGTTTCGTCTACATTGGCAGTGCCGCGCAATAGGAAGTTTGTTCGTGAGGTGACTGGGAGGGTGACATTCGAGACTGTAAGATCTTTTGTTGAATTCATGTTGTGGACACTACTGGAGGGGTTGAAAAGAACTGTTAGTGTGGTTCATGGGGAGATTGTGGGTAGGGGGTTGCAAGTTATCAGATATTTTGGTGCAAAGTCTTCGGCTATTGTTACCATATGTCTTGCTTTGCACTTGTATGTTCTAGGAGGTAGTAGAGTTCTCTTGACTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

404

Amino Acids

43.82

Weight (kDa)

8.38

Isoelectric Point (pI)

30.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49240 AT2G42090 AT2G42100 AT2G42170 AT2G42170 AT2G42170 AT3G18780 AT3G18780 AT3G18780
fragaria_vesca	FvH4_5g10190
malus_domestica	MD06G1127300.v1.1 MD14G1142600.v1.1
prunus_persica	Prupe.5G137100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0188051
rosa_laevigata	RLG00000004731
rosa_roxburghii	Rroxscaffold_3G00266780
rosa_rugosa	Rorug06G0487700 Rorug06G0487800
rosa_samantha	Rh7AG092100 Rh7BG093700 Rh7CG093000 Rh7DG094200
rosa_wichuraiana	Rw7G007960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	86
AccI	GTMKAC	2 cut(s)	617, 947
AccII	CGCG	3 cut(s)	62, 74, 964
AciI	CCGC	6 cut(s)	62, 170, 560, 623, 629, 962
AclWI	GGATC	1 cut(s)	566
AcoI	YGGCCR	1 cut(s)	189
AcsI	RAATTY	3 cut(s)	391, 811, 1031
AcuI	CTGAAG	2 cut(s)	287, 453
AcyI	GRCGYC	2 cut(s)	87, 179
AfaI	GTAC	1 cut(s)	635
AfiI	CCNNNNNNNGG	2 cut(s)	444, 893
AflIII	ACRYGT	1 cut(s)	672
AgsI	TTSAA	4 cut(s)	223, 836, 1031, 1063
AjuI	GAANNNNNNNTTGG	2 cut(s)	368, 400
AloI	GAACNNNNNNTCC	2 cut(s)	227, 259
AluBI	AGCT	6 cut(s)	399, 471, 586, 721, 807, 851
AluI	AGCT	6 cut(s)	399, 471, 586, 721, 807, 851
Alw21I	GWGCWC	2 cut(s)	723, 809
Alw26I	GTCTC	5 cut(s)	188, 214, 362, 746, 1004
AlwI	GGATC	1 cut(s)	566
Ama87I	CYCGRG	1 cut(s)	8
AoxI	GGCC	3 cut(s)	24, 63, 189
ApeKI	GCWGC	1 cut(s)	883
ApoI	RAATTY	3 cut(s)	391, 811, 1031
Asp700I	GAANNNNTTC	2 cut(s)	425, 940
AspLEI	GCGC	3 cut(s)	74, 89, 966
AspS9I	GGNCC	3 cut(s)	64, 118, 441
AsuC2I	CCSGG	2 cut(s)	439, 445
AsuHPI	GGTGA	2 cut(s)	1000, 1012
AsuII	TTCGAA	1 cut(s)	797
AvaI	CYCGRG	1 cut(s)	8
AvaII	GGWCC	2 cut(s)	118, 441
BanI	GGYRCC	1 cut(s)	86
BanII	GRGCYC	4 cut(s)	15, 157, 723, 809
BbsI	GAAGAC	1 cut(s)	1131
Bbv12I	GWGCWC	2 cut(s)	723, 809
BbvI	GCAGC	1 cut(s)	895
BccI	CCATC	2 cut(s)	169, 543
BceAI	ACGGC	1 cut(s)	100
BcgI	CGANNNNNNTGC	4 cut(s)	10, 44, 1122, 1156
BcnI	CCSGG	2 cut(s)	439, 445
BcoDI	GTCTC	5 cut(s)	188, 214, 362, 746, 1004
BfaI	CTAG	3 cut(s)	638, 852, 1184
BfmI	CTRYAG	1 cut(s)	91
BfoI	RGCGCY	1 cut(s)	90
BglII	AGATCT	1 cut(s)	1019
BisI	GCNGC	4 cut(s)	63, 630, 884, 962
BlsI	GCNGC	4 cut(s)	64, 631, 885, 963
Bme1390I	CCNGG	2 cut(s)	439, 445
Bme18I	GGWCC	2 cut(s)	118, 441
BmeT110I	CYCGRG	1 cut(s)	8
BmgT120I	GGNCC	3 cut(s)	64, 118, 441
BmiI	GGNNCC	4 cut(s)	88, 154, 244, 442
BmrFI	CCNGG	2 cut(s)	439, 445
BmrI	ACTGGG	1 cut(s)	1002
BmsI	GCATC	3 cut(s)	40, 547, 709
BmuI	ACTGGG	1 cut(s)	1002
BpiI	GAAGAC	1 cut(s)	1131
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
BpmI	CTGGAG	1 cut(s)	1073
Bpu14I	TTCGAA	1 cut(s)	797
BpuEI	CTTGAG	2 cut(s)	887, 926
BpuMI	CCSGG	2 cut(s)	439, 445
BsaHI	GRCGYC	2 cut(s)	87, 179
BsaI	GGTCTC	1 cut(s)	188
BsaJI	CCNNGG	2 cut(s)	67, 352
BsaWI	WCCGGW	2 cut(s)	77, 239
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bsc4I	CCNNNNNNNGG	2 cut(s)	444, 893
Bse1I	ACTGG	2 cut(s)	997, 1056
Bse3DI	GCAATG	1 cut(s)	745
BseDI	CCNNGG	2 cut(s)	67, 352
BseGI	GGATG	3 cut(s)	544, 658, 862
BseLI	CCNNNNNNNGG	2 cut(s)	444, 893
BseMI	GCAATG	1 cut(s)	745
BseNI	ACTGG	2 cut(s)	997, 1056
BseRI	GAGGAG	1 cut(s)	311
BseX3I	CGGCCG	1 cut(s)	189
BseXI	GCAGC	1 cut(s)	895
Bsh1236I	CGCG	3 cut(s)	62, 74, 964
Bsh1285I	CGRYCG	2 cut(s)	192, 342
BshFI	GGCC	3 cut(s)	26, 65, 191
BshNI	GGYRCC	1 cut(s)	86
BsiEI	CGRYCG	2 cut(s)	192, 342
BsiHKAI	GWGCWC	2 cut(s)	723, 809
BsiHKCI	CYCGRG	1 cut(s)	8
BsiSI	CCGG	4 cut(s)	78, 240, 438, 444
BslFI	GGGAC	2 cut(s)	454, 832
BslI	CCNNNNNNNGG	2 cut(s)	444, 893
BsmAI	GTCTC	5 cut(s)	188, 214, 362, 746, 1004
BsmBI	CGTCTC	1 cut(s)	362
BsmFI	GGGAC	2 cut(s)	454, 832
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	3 cut(s)	26, 65, 191
Bso31I	GGTCTC	1 cut(s)	188
BsoBI	CYCGRG	1 cut(s)	8
Bsp119I	TTCGAA	1 cut(s)	797
Bsp1286I	GDGCHC	4 cut(s)	15, 157, 723, 809
Bsp143I	GATC	3 cut(s)	339, 571, 1019
BspACI	CCGC	6 cut(s)	62, 170, 560, 623, 629, 962
BspANI	GGCC	3 cut(s)	26, 65, 191
BspFNI	CGCG	3 cut(s)	62, 74, 964
BspLI	GGNNCC	4 cut(s)	88, 154, 244, 442
BspPI	GGATC	1 cut(s)	566
BspT104I	TTCGAA	1 cut(s)	797
BspT107I	GGYRCC	1 cut(s)	86
BspTNI	GGTCTC	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	745
BsrI	ACTGG	2 cut(s)	997, 1056
BssECI	CCNNGG	2 cut(s)	67, 352
BssMI	GATC	3 cut(s)	339, 571, 1019
BssNI	GRCGYC	2 cut(s)	87, 179
Bst4CI	ACNGT	5 cut(s)	104, 199, 757, 1015, 1072
BstACI	GRCGYC	2 cut(s)	87, 179
BstBI	TTCGAA	1 cut(s)	797
BstDEI	CTNAG	1 cut(s)	1212
BstF5I	GGATG	3 cut(s)	544, 658, 862
BstFNI	CGCG	3 cut(s)	62, 74, 964
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	3 cut(s)	74, 89, 966
BstKTI	GATC	3 cut(s)	342, 574, 1022
BstMAI	GTCTC	5 cut(s)	188, 214, 362, 746, 1004
BstMBI	GATC	3 cut(s)	339, 571, 1019
BstMCI	CGRYCG	2 cut(s)	192, 342
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 176, 629
BstNSI	RCATGY	1 cut(s)	676
BstSCI	CCNGG	2 cut(s)	437, 443
BstSFI	CTRYAG	1 cut(s)	91
BstUI	CGCG	3 cut(s)	62, 74, 964
BstV1I	GCAGC	1 cut(s)	895
BstV2I	GAAGAC	1 cut(s)	1131
BstX2I	RGATCY	1 cut(s)	1019
BstYI	RGATCY	1 cut(s)	1019
BstZI	CGGCCG	1 cut(s)	189
BsuRI	GGCC	3 cut(s)	26, 65, 191
BtsCI	GGATG	3 cut(s)	544, 658, 862
BtsI	GCAGTG	1 cut(s)	963
BtsIMutI	CAGTG	1 cut(s)	963
CfoI	GCGC	3 cut(s)	74, 89, 966
Cfr13I	GGNCC	3 cut(s)	64, 118, 441
CseI	GACGC	3 cut(s)	63, 168, 297
Csp6I	GTAC	1 cut(s)	634
CviAII	CATG	3 cut(s)	673, 1036, 1085
CviQI	GTAC	1 cut(s)	634
DdeI	CTNAG	1 cut(s)	1212
DinI	GGCGCC	1 cut(s)	88
DpnI	GATC	3 cut(s)	341, 573, 1021
DpnII	GATC	3 cut(s)	339, 571, 1019
EaeI	YGGCCR	1 cut(s)	189
EagI	CGGCCG	1 cut(s)	189
EciI	GGCGGA	1 cut(s)	185
Ecl136II	GAGCTC	2 cut(s)	721, 807
EclXI	CGGCCG	1 cut(s)	189
Eco147I	AGGCCT	1 cut(s)	26
Eco24I	GRGCYC	4 cut(s)	15, 157, 723, 809
Eco31I	GGTCTC	1 cut(s)	188
Eco47I	GGWCC	2 cut(s)	118, 441
Eco52I	CGGCCG	1 cut(s)	189
Eco53kI	GAGCTC	2 cut(s)	721, 807
Eco57I	CTGAAG	2 cut(s)	287, 453
Eco88I	CYCGRG	1 cut(s)	8
EcoICRI	GAGCTC	2 cut(s)	721, 807
EcoRI	GAATTC	2 cut(s)	391, 1031
EcoT38I	GRGCYC	4 cut(s)	15, 157, 723, 809
EgeI	GGCGCC	1 cut(s)	88
EheI	GGCGCC	1 cut(s)	88
Esp3I	CGTCTC	1 cut(s)	362
FaeI	CATG	3 cut(s)	676, 1039, 1088
FaqI	GGGAC	2 cut(s)	454, 832
FatI	CATG	3 cut(s)	672, 1035, 1084
FauNDI	CATATG	1 cut(s)	1157
FblI	GTMKAC	2 cut(s)	617, 947
Fnu4HI	GCNGC	4 cut(s)	63, 630, 884, 962
FokI	GGATG	3 cut(s)	551, 665, 869
FriOI	GRGCYC	4 cut(s)	15, 157, 723, 809
Fsp4HI	GCNGC	4 cut(s)	63, 630, 884, 962
FspBI	CTAG	3 cut(s)	638, 852, 1184
GlaI	GCGC	3 cut(s)	73, 88, 965
GluI	GCNGC	4 cut(s)	63, 630, 884, 962
GsuI	CTGGAG	1 cut(s)	1073
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	3 cut(s)	26, 65, 191
HapII	CCGG	4 cut(s)	78, 240, 438, 444
HgaI	GACGC	3 cut(s)	63, 168, 297
HhaI	GCGC	3 cut(s)	74, 89, 966
Hin1I	GRCGYC	2 cut(s)	87, 179
Hin1II	CATG	3 cut(s)	676, 1039, 1088
Hin6I	GCGC	3 cut(s)	72, 87, 964
HinP1I	GCGC	3 cut(s)	72, 87, 964
HincII	GTYRAC	1 cut(s)	324
HindII	GTYRAC	1 cut(s)	324
HindIII	AAGCTT	1 cut(s)	469
HinfI	GANTC	3 cut(s)	185, 524, 799
HpaII	CCGG	4 cut(s)	78, 240, 438, 444
HphI	GGTGA	2 cut(s)	1000, 1012
Hpy166II	GTNNAC	6 cut(s)	100, 324, 618, 902, 948, 1044
Hpy188III	TCNNGA	7 cut(s)	19, 121, 521, 704, 983, 1009, 1204
Hpy8I	GTNNAC	6 cut(s)	100, 324, 618, 902, 948, 1044
Hpy99I	CGWCG	3 cut(s)	152, 251, 313
HpyAV	CCTTC	6 cut(s)	16, 217, 415, 703, 830, 883
HpyCH4III	ACNGT	5 cut(s)	104, 199, 757, 1015, 1072
HpyCH4V	TGCA	8 cut(s)	31, 316, 476, 600, 738, 1111, 1133, 1171
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 176, 629
HpyF3I	CTNAG	1 cut(s)	1212
Hsp92I	GRCGYC	2 cut(s)	87, 179
Hsp92II	CATG	3 cut(s)	676, 1039, 1088
HspAI	GCGC	3 cut(s)	72, 87, 964
KasI	GGCGCC	1 cut(s)	86
Kzo9I	GATC	3 cut(s)	339, 571, 1019
LmnI	GCTCC	4 cut(s)	152, 583, 718, 848
Lsp1109I	GCAGC	1 cut(s)	895
LweI	GCATC	3 cut(s)	40, 547, 709
MaeI	CTAG	3 cut(s)	638, 852, 1184
MaeIII	GTNAC	5 cut(s)	16, 80, 988, 1000, 1150
MalI	GATC	3 cut(s)	341, 573, 1021
MboI	GATC	3 cut(s)	339, 571, 1019
MboII	GAAGA	3 cut(s)	48, 525, 1131
MflI	RGATCY	1 cut(s)	1019
MhlI	GDGCHC	4 cut(s)	15, 157, 723, 809
MluCI	AATT	6 cut(s)	159, 391, 595, 658, 811, 1031
Mly113I	GGCGCC	1 cut(s)	87
MmeI	TCCRAC	5 cut(s)	130, 237, 270, 273, 445
MroXI	GAANNNNTTC	2 cut(s)	425, 940
MslI	CAYNNNNRTG	1 cut(s)	1176
MspI	CCGG	4 cut(s)	78, 240, 438, 444
MspR9I	CCNGG	2 cut(s)	439, 445
Mva1269I	GAATGC	1 cut(s)	511
MvnI	CGCG	3 cut(s)	62, 74, 964
MwoI	GCNNNNNNNGC	3 cut(s)	71, 176, 629
NarI	GGCGCC	1 cut(s)	87
NciI	CCSGG	2 cut(s)	439, 445
NdeI	CATATG	1 cut(s)	1157
NdeII	GATC	3 cut(s)	339, 571, 1019
NlaIII	CATG	3 cut(s)	676, 1039, 1088
NlaIV	GGNNCC	4 cut(s)	88, 154, 244, 442
NmeAIII	GCCGAG	3 cut(s)	48, 217, 377
NmuCI	GTSAC	3 cut(s)	16, 988, 1000
NspI	RCATGY	1 cut(s)	676
NspV	TTCGAA	1 cut(s)	797
PceI	AGGCCT	1 cut(s)	26
PciI	ACATGT	1 cut(s)	672
PctI	GAATGC	1 cut(s)	511
PdmI	GAANNNNTTC	2 cut(s)	425, 940
PfeI	GAWTC	3 cut(s)	185, 524, 799
PflFI	GACNNNGTC	1 cut(s)	823
PkrI	GCNGC	4 cut(s)	64, 631, 885, 963
Ple19I	CGATCG	1 cut(s)	342
PluTI	GGCGCC	1 cut(s)	90
PscI	ACATGT	1 cut(s)	672
Psp124BI	GAGCTC	2 cut(s)	723, 809
PspN4I	GGNNCC	4 cut(s)	88, 154, 244, 442
PspPI	GGNCC	3 cut(s)	64, 118, 441
PsuI	RGATCY	1 cut(s)	1019
PsyI	GACNNNGTC	1 cut(s)	823
PvuI	CGATCG	1 cut(s)	342
RsaI	GTAC	1 cut(s)	635
RsaNI	GTAC	1 cut(s)	634
RseI	CAYNNNNRTG	1 cut(s)	1176
SacI	GAGCTC	2 cut(s)	723, 809
SatI	GCNGC	4 cut(s)	63, 630, 884, 962
Sau3AI	GATC	3 cut(s)	339, 571, 1019
Sau96I	GGNCC	3 cut(s)	64, 118, 441
ScrFI	CCNGG	2 cut(s)	439, 445
SduI	GDGCHC	4 cut(s)	15, 157, 723, 809
SfaNI	GCATC	3 cut(s)	40, 547, 709
SfcI	CTRYAG	1 cut(s)	91
SfoI	GGCGCC	1 cut(s)	88
SfuI	TTCGAA	1 cut(s)	797
SinI	GGWCC	2 cut(s)	118, 441
SmiMI	CAYNNNNRTG	1 cut(s)	1176
SmlI	CTYRAG	2 cut(s)	866, 905
SmoI	CTYRAG	2 cut(s)	866, 905
Sse9I	AATT	6 cut(s)	159, 391, 595, 658, 811, 1031
SseBI	AGGCCT	1 cut(s)	26
SsiI	CCGC	6 cut(s)	62, 170, 560, 623, 629, 962
SspDI	GGCGCC	1 cut(s)	86
SspMI	CTAG	3 cut(s)	638, 852, 1184
SstI	GAGCTC	2 cut(s)	723, 809
StuI	AGGCCT	1 cut(s)	26
StyD4I	CCNGG	2 cut(s)	437, 443
TaaI	ACNGT	5 cut(s)	104, 199, 757, 1015, 1072
TaqI	TCGA	6 cut(s)	34, 395, 527, 555, 797, 1008
TasI	AATT	6 cut(s)	159, 391, 595, 658, 811, 1031
TauI	GCSGC	3 cut(s)	65, 632, 964
TfiI	GAWTC	3 cut(s)	185, 524, 799
TscAI	CASTG	1 cut(s)	963
TseFI	GTSAC	3 cut(s)	16, 988, 1000
TseI	GCWGC	1 cut(s)	883
Tsp45I	GTSAC	3 cut(s)	16, 988, 1000
TspDTI	ATGAA	3 cut(s)	127, 1024, 1073
TspGWI	ACGGA	1 cut(s)	341
TspRI	CASTG	1 cut(s)	963
Tth111I	GACNNNGTC	1 cut(s)	823
VpaK11BI	GGWCC	2 cut(s)	118, 441
XapI	RAATTY	3 cut(s)	391, 811, 1031
XceI	RCATGY	1 cut(s)	676
XmiI	GTMKAC	2 cut(s)	617, 947
XmnI	GAANNNNTTC	2 cut(s)	425, 940
XspI	CTAG	3 cut(s)	638, 852, 1184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.