Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0008204

Physical Location & Seq

Genomic Coordinates Forward (+)

12937007 .. 12939073

Gene Structure 2067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G137100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCAGATACCGAGGACATTCAGCCTCTTGTCTGTGATAATGGAACTGGAATGGTTAAGGCTGGATTTGCCGGAGATGATGCTCCAAGGGCCGTCTTCCCCAGTATTGTTGGTCGACCTAGACACACGGGTGTTATGGTGGGGATGGGACAGAAAGATGCCTATGTTGGAGATGAGGCCCAGTCCAAAAGAGGTATTCTCACACTAAAATACCCTATTGAACATGGGATTGTTAGCAACTGGGACGACATGGAAAAGATCTGGCATCATACTTTCTACAATGAGCTTCGTGTGGCTCCTGAAGAACATCCTGTACTTCTTACTGAGGCACCCCTGAATCCTAAGGCAAACAGGGAGAAGATGACTCAGATCATGTTTGAGACCTTCAATGTCCCTGCTATGTATGTTGCCATTCAAGCAGTTCTCTCCCTCTATGCTAGTGGGCGTACTACAGGTATTGTGCTGGACTCTGGTGATGGAGTCAGTCACACAGTTCCCATCTACGAAGGTTATGCGCTTCCACATGCCATCCTCCGGCTTGACCTCGCTGGAAGAGATTTAACAGATGCCTTAATGAAGATCCTGACTGAGAGAGGGTACACTTTTACTACAACTGCTGAACGGGAAATTGTACGTGACATTAAGGAGAAACTTGCCTATGTGGCACTTGATTATGAACAGGAACTTGAAACTGCTAAAACCAGCTCATCAATTGAGAAGAGCTATGAACTACCTGATGGTCAGGTAATTACAATTGGAGCAGAGCGATTCCGTTGTCCCGAGGTCCTATTTCAACCATCATTTATTGGAATGGAGTCTCCTGGAATTCACGAGACCACCTACAACTCAATTATGAAGTGTGATGTTGACATCAGAAAAGACTTGTATGGTAACATAGTGCTGAGTGGAGGGTCCACCATGTTCCCAGGAATTGCTGATCGAATGAGCAAGGAGATCACAGCCCTTGCACCAAGCAGCGTGAAGATTAAGGTGGTAGCACCTCCAGAGAGAAAATACAGTGTCTGGATTGGAGGGTCTATATTAGCTTCACTGAGCACATTCCAGCAGATGTGGATATCTAAGTCAGAGTACGATGAATCAGGGCCATCCATCGTTCACAGAAAGTGCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

378

Amino Acids

41.75

Weight (kDa)

5.31

Isoelectric Point (pI)

38.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49240 AT2G42090 AT2G42100 AT2G42170 AT2G42170 AT2G42170 AT3G18780 AT3G18780 AT3G18780
fragaria_vesca	FvH4_5g10190
malus_domestica	MD06G1127300.v1.1 MD14G1142600.v1.1
prunus_persica	Prupe.5G137100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0188051
rosa_laevigata	RLG00000004731
rosa_roxburghii	Rroxscaffold_3G00266780
rosa_rugosa	Rorug06G0487700 Rorug06G0487800
rosa_samantha	Rh7AG092100 Rh7BG093700 Rh7CG093000 Rh7DG094200
rosa_wichuraiana	Rw7G007960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	328
AccI	GTMKAC	1 cut(s)	115
AclWI	GGATC	1 cut(s)	574
AcsI	RAATTY	1 cut(s)	825
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	5 cut(s)	315, 448, 599, 633, 1091
AfiI	CCNNNNNNNGG	1 cut(s)	534
AgsI	TTSAA	5 cut(s)	221, 388, 416, 689, 794
AjnI	CCWGG	2 cut(s)	820, 925
AleI	CACNNNNGTG	1 cut(s)	129
AluBI	AGCT	4 cut(s)	286, 705, 723, 1046
AluI	AGCT	4 cut(s)	286, 705, 723, 1046
Alw21I	GWGCWC	1 cut(s)	1058
Alw26I	GTCTC	3 cut(s)	374, 822, 827
AlwI	GGATC	1 cut(s)	574
AlwNI	CAGNNNCTG	1 cut(s)	1023
Ama87I	CYCGRG	1 cut(s)	779
AoxI	GGCC	3 cut(s)	90, 177, 1103
ApeKI	GCWGC	1 cut(s)	975
ApoI	RAATTY	1 cut(s)	825
AspLEI	GCGC	1 cut(s)	517
AspS9I	GGNCC	5 cut(s)	90, 178, 784, 912, 1103
AsuHPI	GGTGA	1 cut(s)	485
AvaI	CYCGRG	1 cut(s)	779
AvaII	GGWCC	2 cut(s)	784, 912
AxyI	CCTNAGG	1 cut(s)	342
BanI	GGYRCC	1 cut(s)	328
BauI	CACGAG	1 cut(s)	830
BbsI	GAAGAC	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	1058
BbvI	GCAGC	1 cut(s)	987
BccI	CCATC	8 cut(s)	139, 470, 506, 536, 731, 805, 1114, 1118
BceAI	ACGGC	1 cut(s)	77
BcgI	CGANNNNNNTGC	2 cut(s)	494, 528
BciT130I	CCWGG	2 cut(s)	822, 927
BcoDI	GTCTC	3 cut(s)	374, 822, 827
BfaI	CTAG	3 cut(s)	120, 438, 1132
BfmI	CTRYAG	1 cut(s)	450
BglI	GCCNNNNNGGC	1 cut(s)	662
BglII	AGATCT	1 cut(s)	258
BisI	GCNGC	1 cut(s)	976
BlsI	GCNGC	1 cut(s)	977
Bme1390I	CCNGG	2 cut(s)	822, 927
Bme18I	GGWCC	2 cut(s)	784, 912
BmeT110I	CYCGRG	1 cut(s)	779
BmgT120I	GGNCC	5 cut(s)	90, 178, 784, 912, 1103
BmiI	GGNNCC	3 cut(s)	297, 330, 913
BmrFI	CCNGG	2 cut(s)	822, 927
BmrI	ACTGGG	3 cut(s)	96, 175, 250
BmsI	GCATC	4 cut(s)	70, 148, 274, 556
BmuI	ACTGGG	3 cut(s)	96, 175, 250
BpiI	GAAGAC	1 cut(s)	88
BplI	GAGNNNNNCTC	2 cut(s)	183, 215
BpmI	CTGGAG	1 cut(s)	987
BsaAI	YACGTR	1 cut(s)	635
BsaI	GGTCTC	2 cut(s)	374, 827
BsaJI	CCNNGG	4 cut(s)	12, 86, 780, 925
Bsc4I	CCNNNNNNNGG	1 cut(s)	534
Bse1I	ACTGG	4 cut(s)	52, 102, 181, 245
Bse21I	CCTNAGG	1 cut(s)	342
BseBI	CCWGG	2 cut(s)	822, 927
BseDI	CCNNGG	4 cut(s)	12, 86, 780, 925
BseGI	GGATG	4 cut(s)	150, 307, 528, 1106
BseLI	CCNNNNNNNGG	1 cut(s)	534
BseMII	CTCAG	5 cut(s)	315, 380, 579, 893, 1043
BseNI	ACTGG	4 cut(s)	52, 102, 181, 245
BseXI	GCAGC	1 cut(s)	987
BshFI	GGCC	3 cut(s)	92, 179, 1105
BshNI	GGYRCC	1 cut(s)	328
BsiHKAI	GWGCWC	1 cut(s)	1058
BsiHKCI	CYCGRG	1 cut(s)	779
BsiSI	CCGG	2 cut(s)	72, 535
BslFI	GGGAC	4 cut(s)	162, 257, 377, 762
BslI	CCNNNNNNNGG	1 cut(s)	534
BsmAI	GTCTC	3 cut(s)	374, 822, 827
BsmFI	GGGAC	4 cut(s)	162, 257, 377, 762
BsnI	GGCC	3 cut(s)	92, 179, 1105
Bso31I	GGTCTC	2 cut(s)	374, 827
BsoBI	CYCGRG	1 cut(s)	779
Bsp1286I	GDGCHC	1 cut(s)	1058
Bsp143I	GATC	5 cut(s)	258, 369, 579, 937, 954
BspANI	GGCC	3 cut(s)	92, 179, 1105
BspCNI	CTCAG	5 cut(s)	316, 379, 580, 894, 1044
BspLI	GGNNCC	3 cut(s)	297, 330, 913
BspPI	GGATC	1 cut(s)	574
BspQI	GCTCTTC	1 cut(s)	713
BspT107I	GGYRCC	1 cut(s)	328
BspTNI	GGTCTC	2 cut(s)	374, 827
BsrI	ACTGG	4 cut(s)	52, 102, 181, 245
BssECI	CCNNGG	4 cut(s)	12, 86, 780, 925
BssMI	GATC	5 cut(s)	258, 369, 579, 937, 954
BssSI	CACGAG	1 cut(s)	830
BssT1I	CCWWGG	1 cut(s)	86
Bst2BI	CACGAG	1 cut(s)	830
Bst2UI	CCWGG	2 cut(s)	822, 927
Bst4CI	ACNGT	2 cut(s)	493, 1019
Bst6I	CTCTTC	2 cut(s)	547, 713
BstBAI	YACGTR	1 cut(s)	635
BstDEI	CTNAG	7 cut(s)	324, 342, 366, 588, 902, 1052, 1080
BstF5I	GGATG	4 cut(s)	150, 307, 528, 1106
BstHHI	GCGC	1 cut(s)	517
BstKTI	GATC	5 cut(s)	261, 372, 582, 940, 957
BstMAI	GTCTC	3 cut(s)	374, 822, 827
BstMBI	GATC	5 cut(s)	258, 369, 579, 937, 954
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 89, 416, 662
BstNI	CCWGG	2 cut(s)	822, 927
BstNSI	RCATGY	1 cut(s)	527
BstSCI	CCNGG	2 cut(s)	820, 925
BstSFI	CTRYAG	1 cut(s)	450
BstV1I	GCAGC	1 cut(s)	987
BstV2I	GAAGAC	1 cut(s)	88
BstX2I	RGATCY	2 cut(s)	258, 579
BstYI	RGATCY	2 cut(s)	258, 579
Bsu36I	CCTNAGG	1 cut(s)	342
BsuRI	GGCC	3 cut(s)	92, 179, 1105
BtsCI	GGATG	4 cut(s)	150, 307, 528, 1106
BtsIMutI	CAGTG	2 cut(s)	1024, 1049
CaiI	CAGNNNCTG	1 cut(s)	1023
CfoI	GCGC	1 cut(s)	517
Cfr13I	GGNCC	5 cut(s)	90, 178, 784, 912, 1103
Csp6I	GTAC	5 cut(s)	314, 447, 598, 632, 1090
CviAII	CATG	5 cut(s)	224, 250, 373, 524, 919
CviQI	GTAC	5 cut(s)	314, 447, 598, 632, 1090
DdeI	CTNAG	7 cut(s)	324, 342, 366, 588, 902, 1052, 1080
DpnI	GATC	5 cut(s)	260, 371, 581, 939, 956
DpnII	GATC	5 cut(s)	258, 369, 579, 937, 954
Eam1104I	CTCTTC	2 cut(s)	547, 713
EarI	CTCTTC	2 cut(s)	547, 713
Eco130I	CCWWGG	1 cut(s)	86
Eco31I	GGTCTC	2 cut(s)	374, 827
Eco32I	GATATC	1 cut(s)	1077
Eco47I	GGWCC	2 cut(s)	784, 912
Eco57I	CTGAAG	1 cut(s)	321
Eco81I	CCTNAGG	1 cut(s)	342
Eco88I	CYCGRG	1 cut(s)	779
EcoO109I	RGGNCCY	1 cut(s)	784
EcoRI	GAATTC	1 cut(s)	825
EcoRII	CCWGG	2 cut(s)	820, 925
EcoRV	GATATC	1 cut(s)	1077
EcoT14I	CCWWGG	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	5 cut(s)	227, 253, 376, 527, 922
FaqI	GGGAC	4 cut(s)	162, 257, 377, 762
FatI	CATG	5 cut(s)	223, 249, 372, 523, 918
FblI	GTMKAC	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	976
FokI	GGATG	4 cut(s)	157, 294, 515, 1093
Fsp4HI	GCNGC	1 cut(s)	976
FspBI	CTAG	3 cut(s)	120, 438, 1132
GlaI	GCGC	1 cut(s)	516
GluI	GCNGC	1 cut(s)	976
GsuI	CTGGAG	1 cut(s)	987
HaeIII	GGCC	3 cut(s)	92, 179, 1105
HapII	CCGG	2 cut(s)	72, 535
HhaI	GCGC	1 cut(s)	517
Hin1II	CATG	5 cut(s)	227, 253, 376, 527, 922
Hin6I	GCGC	1 cut(s)	515
HinP1I	GCGC	1 cut(s)	515
HincII	GTYRAC	2 cut(s)	116, 868
HindII	GTYRAC	2 cut(s)	116, 868
HinfI	GANTC	7 cut(s)	337, 364, 467, 480, 768, 815, 1097
HpaII	CCGG	2 cut(s)	72, 535
HphI	GGTGA	1 cut(s)	485
Hpy166II	GTNNAC	5 cut(s)	116, 600, 868, 915, 1117
Hpy188I	TCNGA	3 cut(s)	369, 875, 1087
Hpy188III	TCNNGA	6 cut(s)	299, 583, 779, 830, 1004, 1024
Hpy8I	GTNNAC	5 cut(s)	116, 600, 868, 915, 1117
HpyAV	CCTTC	2 cut(s)	394, 500
HpyCH4III	ACNGT	2 cut(s)	493, 1019
HpyCH4IV	ACGT	1 cut(s)	634
HpyCH4V	TGCA	1 cut(s)	968
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 89, 416, 662
HpyF3I	CTNAG	7 cut(s)	324, 342, 366, 588, 902, 1052, 1080
HpySE526I	ACGT	1 cut(s)	634
Hsp92II	CATG	5 cut(s)	227, 253, 376, 527, 922
HspAI	GCGC	1 cut(s)	515
Kzo9I	GATC	5 cut(s)	258, 369, 579, 937, 954
LguI	GCTCTTC	1 cut(s)	713
LmnI	GCTCC	3 cut(s)	88, 301, 758
Lsp1109I	GCAGC	1 cut(s)	987
LweI	GCATC	4 cut(s)	70, 148, 274, 556
MaeI	CTAG	3 cut(s)	120, 438, 1132
MaeII	ACGT	1 cut(s)	634
MaeIII	GTNAC	3 cut(s)	485, 635, 890
MalI	GATC	5 cut(s)	260, 371, 581, 939, 956
MboI	GATC	5 cut(s)	258, 369, 579, 937, 954
MboII	GAAGA	7 cut(s)	88, 314, 370, 564, 589, 730, 994
MfeI	CAATTG	2 cut(s)	711, 753
MflI	RGATCY	2 cut(s)	258, 579
MhlI	GDGCHC	1 cut(s)	1058
MluCI	AATT	7 cut(s)	627, 711, 747, 753, 825, 849, 930
MlyI	GAGTC	4 cut(s)	358, 461, 489, 824
MmeI	TCCRAC	1 cut(s)	148
MseI	TTAA	5 cut(s)	57, 560, 572, 642, 987
MslI	CAYNNNNRTG	1 cut(s)	129
MspI	CCGG	2 cut(s)	72, 535
MspR9I	CCNGG	2 cut(s)	822, 927
MunI	CAATTG	2 cut(s)	711, 753
MvaI	CCWGG	2 cut(s)	822, 927
MwoI	GCNNNNNNNGC	4 cut(s)	68, 89, 416, 662
NdeII	GATC	5 cut(s)	258, 369, 579, 937, 954
NlaIII	CATG	5 cut(s)	227, 253, 376, 527, 922
NlaIV	GGNNCC	3 cut(s)	297, 330, 913
NmuCI	GTSAC	2 cut(s)	485, 635
NspI	RCATGY	1 cut(s)	527
OliI	CACNNNNGTG	1 cut(s)	129
PciSI	GCTCTTC	1 cut(s)	713
PfeI	GAWTC	3 cut(s)	337, 768, 1097
PfoI	TCCNGGA	1 cut(s)	820
PkrI	GCNGC	1 cut(s)	977
PleI	GAGTC	4 cut(s)	358, 461, 488, 823
PpsI	GAGTC	4 cut(s)	358, 461, 488, 823
Ppu21I	YACGTR	1 cut(s)	635
PpuMI	RGGWCCY	1 cut(s)	784
Psp5II	RGGWCCY	1 cut(s)	784
Psp6I	CCWGG	2 cut(s)	820, 925
PspGI	CCWGG	2 cut(s)	820, 925
PspN4I	GGNNCC	3 cut(s)	297, 330, 913
PspPI	GGNCC	5 cut(s)	90, 178, 784, 912, 1103
PspPPI	RGGWCCY	1 cut(s)	784
PsrI	GAACNNNNNNTAC	2 cut(s)	297, 329
PstNI	CAGNNNCTG	1 cut(s)	1023
PsuI	RGATCY	2 cut(s)	258, 579
RsaI	GTAC	5 cut(s)	315, 448, 599, 633, 1091
RsaNI	GTAC	5 cut(s)	314, 447, 598, 632, 1090
RseI	CAYNNNNRTG	1 cut(s)	129
SalI	GTCGAC	1 cut(s)	114
SapI	GCTCTTC	1 cut(s)	713
SaqAI	TTAA	5 cut(s)	57, 560, 572, 642, 987
SatI	GCNGC	1 cut(s)	976
Sau3AI	GATC	5 cut(s)	258, 369, 579, 937, 954
Sau96I	GGNCC	5 cut(s)	90, 178, 784, 912, 1103
SchI	GAGTC	4 cut(s)	358, 461, 489, 824
ScrFI	CCNGG	2 cut(s)	822, 927
SduI	GDGCHC	1 cut(s)	1058
SfaNI	GCATC	4 cut(s)	70, 148, 274, 556
SfcI	CTRYAG	1 cut(s)	450
SinI	GGWCC	2 cut(s)	784, 912
SmiMI	CAYNNNNRTG	1 cut(s)	129
Sse9I	AATT	7 cut(s)	627, 711, 747, 753, 825, 849, 930
SspMI	CTAG	3 cut(s)	120, 438, 1132
StyD4I	CCNGG	2 cut(s)	820, 925
StyI	CCWWGG	1 cut(s)	86
TaaI	ACNGT	2 cut(s)	493, 1019
TaiI	ACGT	1 cut(s)	637
TaqI	TCGA	2 cut(s)	115, 940
TasI	AATT	7 cut(s)	627, 711, 747, 753, 825, 849, 930
TatI	WGTACW	1 cut(s)	313
TfiI	GAWTC	3 cut(s)	337, 768, 1097
Tru1I	TTAA	5 cut(s)	57, 560, 572, 642, 987
Tru9I	TTAA	5 cut(s)	57, 560, 572, 642, 987
TscAI	CASTG	2 cut(s)	1024, 1056
TseFI	GTSAC	2 cut(s)	485, 635
TseI	GCWGC	1 cut(s)	975
Tsp45I	GTSAC	2 cut(s)	485, 635
TspDTI	ATGAA	5 cut(s)	590, 690, 741, 869, 1110
TspGWI	ACGGA	1 cut(s)	761
TspRI	CASTG	2 cut(s)	1024, 1056
VpaK11BI	GGWCC	2 cut(s)	784, 912
XapI	RAATTY	1 cut(s)	825
XceI	RCATGY	1 cut(s)	527
XmiI	GTMKAC	1 cut(s)	115
XspI	CTAG	3 cut(s)	120, 438, 1132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.