Rorug06G0487700

Belongs to the actin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0008204
Physical Location & Seq
Forward (+)
60638726 .. 60639501
776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0487700.1

Sequence Viewer

Length: 195 bp
ATGAGTTCTGGTTATCCTCCACCTGGATACGGTGGATATCCACCACCATCAACCGGCTATCCTCAGCCTCCTCAGCCTCAAGTTATTGTCCAACAACCACCACCACCACCACAACAATCGCAATCCACTGGATGCATGGAAGGATGTTTGGCTGCTCTTTGCTGTTGTTGCTGCTTGGAAATGCTTTGCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Actin

Protein Analysis

64

Amino Acids

6.66

Weight (kDa)

4.05

Isoelectric Point (pI)

100.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYSTM PF12734 19 - 63 1.9e-07 Cysteine-rich TM module stress tolerance
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 3 cut(s) 23, 29, 53
AjnI CCWGG 1 cut(s) 22
ApeKI GCWGC 2 cut(s) 152, 171
BbvCI CCTCAGC 2 cut(s) 63, 72
BbvI GCAGC 2 cut(s) 139, 158
BccI CCATC 1 cut(s) 55
BciT130I CCWGG 1 cut(s) 24
BciVI GTATCC 1 cut(s) 20
BfuI GTATCC 1 cut(s) 20
BisI GCNGC 2 cut(s) 153, 172
BlsI GCNGC 2 cut(s) 154, 173
Bme1390I CCNGG 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 24
BmsI GCATC 1 cut(s) 122
Bpu10I CCTNAGC 2 cut(s) 63, 72
BpuEI CTTGAG 1 cut(s) 63
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 29, 53
Bse118I RCCGGY 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 133
BseBI CCWGG 1 cut(s) 24
BseGI GGATG 2 cut(s) 137, 149
BseLI CCNNNNNNNGG 3 cut(s) 23, 29, 53
BseMII CTCAG 2 cut(s) 77, 86
BseNI ACTGG 1 cut(s) 133
BseRI GAGGAG 1 cut(s) 60
BseXI GCAGC 2 cut(s) 139, 158
BsiSI CCGG 1 cut(s) 54
BslI CCNNNNNNNGG 3 cut(s) 23, 29, 53
BspCNI CTCAG 2 cut(s) 76, 85
BsrFI RCCGGY 1 cut(s) 53
BsrI ACTGG 1 cut(s) 133
BssAI RCCGGY 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 1 cut(s) 32
BstDEI CTNAG 2 cut(s) 63, 72
BstF5I GGATG 2 cut(s) 137, 149
BstMWI GCNNNNNNNGC 2 cut(s) 73, 168
BstNI CCWGG 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 22
BstV1I GCAGC 2 cut(s) 139, 158
BsuI GTATCC 1 cut(s) 20
BtsCI GGATG 2 cut(s) 137, 149
BtsIMutI CAGTG 1 cut(s) 126
Cfr10I RCCGGY 1 cut(s) 53
CviAII CATG 1 cut(s) 136
CviJI RGCY 4 cut(s) 57, 67, 76, 152
CviKI_1 RGCY 4 cut(s) 57, 67, 76, 152
DdeI CTNAG 2 cut(s) 63, 72
Eco32I GATATC 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 22
EcoRV GATATC 1 cut(s) 38
EcoT22I ATGCAT 1 cut(s) 137
FaeI CATG 1 cut(s) 139
FaiI YATR 2 cut(s) 137, 193
FatI CATG 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 153, 172
FokI GGATG 2 cut(s) 144, 156
Fsp4HI GCNGC 2 cut(s) 153, 172
GluI GCNGC 2 cut(s) 153, 172
HapII CCGG 1 cut(s) 54
Hin1II CATG 1 cut(s) 139
HpaII CCGG 1 cut(s) 54
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4V TGCA 1 cut(s) 135
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 168
HpyF3I CTNAG 2 cut(s) 63, 72
Hsp92II CATG 1 cut(s) 139
LpnPI CCDG 4 cut(s) 9, 36, 67, 114
Lsp1109I GCAGC 2 cut(s) 139, 158
LweI GCATC 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 5 cut(s) 27, 72, 78, 81, 87
Mph1103I ATGCAT 1 cut(s) 137
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 24
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 2 cut(s) 73, 168
NlaIII CATG 1 cut(s) 139
NsiI ATGCAT 1 cut(s) 137
PkrI GCNGC 2 cut(s) 154, 173
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
SatI GCNGC 2 cut(s) 153, 172
ScrFI CCNGG 1 cut(s) 24
SetI ASST 1 cut(s) 25
SfaNI GCATC 1 cut(s) 122
SgeI CNNG 8 cut(s) 21, 35, 36, 66, 92, 141, 148, 187
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 22
TaaI ACNGT 1 cut(s) 32
TscAI CASTG 1 cut(s) 133
TseI GCWGC 2 cut(s) 152, 171
TspRI CASTG 1 cut(s) 133
XcmI CCANNNNNNNNNTGG 1 cut(s) 133
Zsp2I ATGCAT 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.