Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008204

Physical Location & Seq

Genomic Coordinates Forward (+)

6474710 .. 6477204

Gene Structure 2495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G18780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGCTGAGGCTGATGATATTCAACCAATCGTGTGTGACAATGGTACCGGTATGGTGAAGGCTGGATTTGCAGGAGATGATGCTCCCAGGGCTGTTTTTCCCAGTGTTGTTGGTAGGCCAAGACATCATGGTGTCATGGTTGGGATGAACCAGAAGGATGCATATGTTGGTGATGAAGCACAATCCAAGAGAGGTATTCTTACCTTGAAGTATCCTATTGAGCATGGTGTTGTTAGCAACTGGGATGATATGGAAAAGATCTGGCATCACACTTTCTACAATGAGCTTCGTATTGCTCCTGAAGAGCACCCTGTTCTTCTTACCGAGGCTCCTCTTAACCCAAAGGCCAACAGAGAGAAGATGACTCAAATCATGTTTGAGACCTTTAACTCTCCCGCTATGTATGTCGCCATCCAAGCTGTTCTCTCCTTGTACGCCAGTGGTCGTACAACCGGTATTGTGCTGGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGTTTCTCTCTTCCTCATGCCATCCTCCGTCTTGACCTTGCTGGACGTGACCTTACTGATTACCTCATGAAGATCCTTACAGAGAGAGGTTACATGTTCACCACAACAGCAGAGCGGGAAATTGTAAGAGACATCAAGGAGAAGCTCTCCTTTGTTGCTGTTGACTACGAGCAGGAGATGGAAACCTCAAAGACCAGCTCTTCCATCGAGAAGAACTATGAATTACCCGATGGGCAAGTCATCACGATTGGTGCTGAGAGATTCAGATGCCCAGAAGTCTTGTTCCAGCCCTCGTTTGTGGGAATGGAAGCTGCTGGAATCCACGAGACAACCTATAACTCAATCATGAAGTGTGATGTGGATATCAGGAAGGATCTGTACGGTAACATTGTGCTCAGTGGTGGAACCACTATGTTCTCAGGTATCGCTGACCGTATGAGCAAAGAAATCACAGCACTTGCACCAAGCAGCATGAAGATTAAGGTCGTTGCACCACCTGAAAGGAAGTACAGTGTCTGGATCGGTGGTTCCATTCTTGCTTCCCTCAGCACATTCCAGCAGGTAAAAATTGATCAGATTTTGTTTCGAATTCTCTTACATGCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009642 GO:0009644 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010114 GO:0010218 GO:0016020 GO:0016043 GO:0016049 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071695 GO:0071840 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

371

Amino Acids

41.23

Weight (kDa)

5.44

Isoelectric Point (pI)

36.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	5 - 359	3.4e-132	Actin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49240 AT2G42090 AT2G42100 AT2G42170 AT2G42170 AT2G42170 AT3G18780 AT3G18780 AT3G18780
fragaria_vesca	FvH4_5g10190
malus_domestica	MD06G1127300.v1.1 MD14G1142600.v1.1
prunus_persica	Prupe.5G137100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0188051
rosa_laevigata	RLG00000004731
rosa_roxburghii	Rroxscaffold_3G00266780
rosa_rugosa	Rorug06G0487700 Rorug06G0487800
rosa_samantha	Rh7AG092100 Rh7BG093700 Rh7CG093000 Rh7DG094200
rosa_wichuraiana	Rw7G007960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1057
Acc65I	GGTACC	1 cut(s)	44
AccB1I	GGYRCC	1 cut(s)	44
AccBSI	CCGCTC	1 cut(s)	622
AciI	CCGC	2 cut(s)	396, 622
AclWI	GGATC	3 cut(s)	574, 888, 1034
AcsI	RAATTY	1 cut(s)	1095
AcuI	CTGAAG	1 cut(s)	321
AdeI	CACNNNGTG	1 cut(s)	493
AfaI	GTAC	5 cut(s)	46, 434, 448, 887, 1016
AflIII	ACRYGT	1 cut(s)	600
AgeI	ACCGGT	2 cut(s)	47, 452
AgsI	TTSAA	2 cut(s)	23, 208
AjiI	CACGTC	1 cut(s)	554
AjnI	CCWGG	1 cut(s)	86
AloI	GAACNNNNNNTCC	2 cut(s)	1018, 1050
AluBI	AGCT	5 cut(s)	286, 419, 652, 705, 818
AluI	AGCT	5 cut(s)	286, 419, 652, 705, 818
Alw21I	GWGCWC	2 cut(s)	309, 903
Alw26I	GTCTC	4 cut(s)	374, 489, 630, 827
AlwI	GGATC	3 cut(s)	574, 888, 1034
AlwNI	CAGNNNCTG	1 cut(s)	1023
AoxI	GGCC	2 cut(s)	116, 345
ApeKI	GCWGC	2 cut(s)	818, 975
ApoI	RAATTY	1 cut(s)	1095
AsiGI	ACCGGT	2 cut(s)	47, 452
Asp718I	GGTACC	1 cut(s)	44
AsuHPI	GGTGA	4 cut(s)	67, 182, 485, 598
AsuII	TTCGAA	1 cut(s)	1093
BaeI	ACNNNNGTAYC	2 cut(s)	28, 61
BanI	GGYRCC	1 cut(s)	44
BarI	GAAGNNNNNNTAC	2 cut(s)	869, 901
BauI	CACGAG	1 cut(s)	830
Bbv12I	GWGCWC	2 cut(s)	309, 903
BbvCI	CCTCAGC	2 cut(s)	6, 1052
BbvI	GCAGC	2 cut(s)	805, 987
BccI	CCATC	6 cut(s)	419, 470, 536, 679, 719, 731
BciT130I	CCWGG	1 cut(s)	88
BciVI	GTATCC	1 cut(s)	222
BclI	TGATCA	1 cut(s)	1078
BcoDI	GTCTC	4 cut(s)	374, 489, 630, 827
BfuAI	ACCTGC	1 cut(s)	1057
BfuI	GTATCC	1 cut(s)	222
BglII	AGATCT	1 cut(s)	258
BisI	GCNGC	2 cut(s)	819, 976
BlsI	GCNGC	2 cut(s)	820, 977
Bme1390I	CCNGG	1 cut(s)	88
BmgBI	CACGTC	1 cut(s)	554
BmiI	GGNNCC	4 cut(s)	46, 330, 913, 1036
BmrFI	CCNGG	1 cut(s)	88
BmrI	ACTGGG	2 cut(s)	96, 250
BmsI	GCATC	4 cut(s)	70, 148, 274, 764
BmuI	ACTGGG	2 cut(s)	96, 250
BplI	GAGNNNNNCTC	4 cut(s)	497, 529, 638, 670
Bpu10I	CCTNAGC	2 cut(s)	6, 1052
Bpu14I	TTCGAA	1 cut(s)	1093
BsaI	GGTCTC	1 cut(s)	374
BsaJI	CCNNGG	3 cut(s)	86, 87, 324
BsaWI	WCCGGW	2 cut(s)	47, 452
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bse118I	RCCGGY	2 cut(s)	47, 452
Bse1I	ACTGG	3 cut(s)	102, 245, 438
BseBI	CCWGG	1 cut(s)	88
BseDI	CCNNGG	3 cut(s)	86, 87, 324
BseGI	GGATG	5 cut(s)	150, 163, 250, 411, 528
BseMII	CTCAG	4 cut(s)	753, 916, 939, 1066
BseNI	ACTGG	3 cut(s)	102, 245, 438
BseRI	GAGGAG	1 cut(s)	321
BseXI	GCAGC	2 cut(s)	805, 987
BshFI	GGCC	2 cut(s)	118, 347
BshNI	GGYRCC	1 cut(s)	44
BshTI	ACCGGT	2 cut(s)	47, 452
BsiHKAI	GWGCWC	2 cut(s)	309, 903
BsiSI	CCGG	2 cut(s)	48, 453
BsmAI	GTCTC	4 cut(s)	374, 489, 630, 827
BsnI	GGCC	2 cut(s)	118, 347
Bso31I	GGTCTC	1 cut(s)	374
Bsp119I	TTCGAA	1 cut(s)	1093
Bsp1286I	GDGCHC	2 cut(s)	309, 903
Bsp143I	GATC	5 cut(s)	258, 579, 880, 1026, 1078
BspACI	CCGC	2 cut(s)	396, 622
BspANI	GGCC	2 cut(s)	118, 347
BspCNI	CTCAG	4 cut(s)	754, 915, 938, 1065
BspHI	TCATGA	2 cut(s)	573, 852
BspLI	GGNNCC	4 cut(s)	46, 330, 913, 1036
BspMI	ACCTGC	1 cut(s)	1057
BspPI	GGATC	3 cut(s)	574, 888, 1034
BspQI	GCTCTTC	2 cut(s)	297, 712
BspT104I	TTCGAA	1 cut(s)	1093
BspT107I	GGYRCC	1 cut(s)	44
BspTNI	GGTCTC	1 cut(s)	374
BsrBI	CCGCTC	1 cut(s)	622
BsrFI	RCCGGY	2 cut(s)	47, 452
BsrI	ACTGG	3 cut(s)	102, 245, 438
BssAI	RCCGGY	2 cut(s)	47, 452
BssECI	CCNNGG	3 cut(s)	86, 87, 324
BssMI	GATC	5 cut(s)	258, 579, 880, 1026, 1078
BssSI	CACGAG	1 cut(s)	830
Bst2BI	CACGAG	1 cut(s)	830
Bst2UI	CCWGG	1 cut(s)	88
Bst4CI	ACNGT	4 cut(s)	493, 890, 941, 1019
Bst6I	CTCTTC	3 cut(s)	297, 522, 712
BstBI	TTCGAA	1 cut(s)	1093
BstDEI	CTNAG	5 cut(s)	6, 762, 902, 925, 1052
BstF5I	GGATG	5 cut(s)	150, 163, 250, 411, 528
BstKTI	GATC	5 cut(s)	261, 582, 883, 1029, 1081
BstMAI	GTCTC	4 cut(s)	374, 489, 630, 827
BstMBI	GATC	5 cut(s)	258, 579, 880, 1026, 1078
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 89, 416
BstNI	CCWGG	1 cut(s)	88
BstNSI	RCATGY	2 cut(s)	604, 1109
BstSCI	CCNGG	1 cut(s)	86
BstV1I	GCAGC	2 cut(s)	805, 987
BstX2I	RGATCY	3 cut(s)	258, 579, 880
BstYI	RGATCY	3 cut(s)	258, 579, 880
BsuI	GTATCC	1 cut(s)	222
BsuRI	GGCC	2 cut(s)	118, 347
BtrI	CACGTC	1 cut(s)	554
BtsCI	GGATG	5 cut(s)	150, 163, 250, 411, 528
BtsIMutI	CAGTG	5 cut(s)	109, 445, 489, 910, 1024
BveI	ACCTGC	1 cut(s)	1057
CaiI	CAGNNNCTG	1 cut(s)	1023
CciI	TCATGA	2 cut(s)	573, 852
Cfr10I	RCCGGY	2 cut(s)	47, 452
Csp6I	GTAC	5 cut(s)	45, 433, 447, 886, 1015
CspAI	ACCGGT	2 cut(s)	47, 452
CviQI	GTAC	5 cut(s)	45, 433, 447, 886, 1015
DdeI	CTNAG	5 cut(s)	6, 762, 902, 925, 1052
DpnI	GATC	5 cut(s)	260, 581, 882, 1028, 1080
DpnII	GATC	5 cut(s)	258, 579, 880, 1026, 1078
DraIII	CACNNNGTG	1 cut(s)	493
Eam1104I	CTCTTC	3 cut(s)	297, 522, 712
EarI	CTCTTC	3 cut(s)	297, 522, 712
Eco31I	GGTCTC	1 cut(s)	374
Eco32I	GATATC	1 cut(s)	871
Eco57I	CTGAAG	1 cut(s)	321
EcoRI	GAATTC	1 cut(s)	1095
EcoRII	CCWGG	1 cut(s)	86
EcoRV	GATATC	1 cut(s)	871
EcoT22I	ATGCAT	1 cut(s)	163
FalI	AAGNNNNNCTT	2 cut(s)	641, 673
FauI	CCCGC	2 cut(s)	403, 615
FauNDI	CATATG	1 cut(s)	163
FbaI	TGATCA	1 cut(s)	1078
Fnu4HI	GCNGC	2 cut(s)	819, 976
FokI	GGATG	5 cut(s)	157, 170, 257, 398, 515
Fsp4HI	GCNGC	2 cut(s)	819, 976
GluI	GCNGC	2 cut(s)	819, 976
HaeIII	GGCC	2 cut(s)	118, 347
HapII	CCGG	2 cut(s)	48, 453
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
HinfI	GANTC	4 cut(s)	364, 467, 768, 825
HpaII	CCGG	2 cut(s)	48, 453
HphI	GGTGA	4 cut(s)	67, 182, 485, 598
Hpy166II	GTNNAC	2 cut(s)	606, 670
Hpy188I	TCNGA	2 cut(s)	773, 1083
Hpy188III	TCNNGA	8 cut(s)	299, 539, 574, 715, 751, 853, 874, 1024
Hpy8I	GTNNAC	2 cut(s)	606, 670
HpyAV	CCTTC	3 cut(s)	52, 148, 871
HpyCH4III	ACNGT	4 cut(s)	493, 890, 941, 1019
HpyCH4IV	ACGT	1 cut(s)	553
HpyCH4V	TGCA	5 cut(s)	71, 161, 968, 998, 1109
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 89, 416
HpyF3I	CTNAG	5 cut(s)	6, 762, 902, 925, 1052
HpySE526I	ACGT	1 cut(s)	553
KpnI	GGTACC	1 cut(s)	48
Ksp22I	TGATCA	1 cut(s)	1078
Kzo9I	GATC	5 cut(s)	258, 579, 880, 1026, 1078
LguI	GCTCTTC	2 cut(s)	297, 712
LmnI	GCTCC	3 cut(s)	88, 301, 334
Lsp1109I	GCAGC	2 cut(s)	805, 987
LweI	GCATC	4 cut(s)	70, 148, 274, 764
MaeII	ACGT	1 cut(s)	553
MaeIII	GTNAC	4 cut(s)	35, 554, 596, 890
MalI	GATC	5 cut(s)	260, 581, 882, 1028, 1080
MbiI	CCGCTC	1 cut(s)	622
MboI	GATC	5 cut(s)	258, 579, 880, 1026, 1078
MboII	GAAGA	8 cut(s)	308, 314, 370, 509, 589, 699, 730, 994
MflI	RGATCY	3 cut(s)	258, 579, 880
MhlI	GDGCHC	2 cut(s)	309, 903
MluCI	AATT	5 cut(s)	627, 728, 1074, 1095, 1111
MlyI	GAGTC	1 cut(s)	358
Mph1103I	ATGCAT	1 cut(s)	163
MseI	TTAA	3 cut(s)	336, 387, 987
MslI	CAYNNNNRTG	1 cut(s)	129
MspI	CCGG	2 cut(s)	48, 453
MspR9I	CCNGG	1 cut(s)	88
MvaI	CCWGG	1 cut(s)	88
MwoI	GCNNNNNNNGC	3 cut(s)	68, 89, 416
NdeI	CATATG	1 cut(s)	163
NdeII	GATC	5 cut(s)	258, 579, 880, 1026, 1078
NlaIV	GGNNCC	4 cut(s)	46, 330, 913, 1036
NmuCI	GTSAC	2 cut(s)	35, 554
NsiI	ATGCAT	1 cut(s)	163
NspI	RCATGY	2 cut(s)	604, 1109
NspV	TTCGAA	1 cut(s)	1093
PagI	TCATGA	2 cut(s)	573, 852
PasI	CCCWGGG	1 cut(s)	87
PciI	ACATGT	1 cut(s)	600
PciSI	GCTCTTC	2 cut(s)	297, 712
PfeI	GAWTC	3 cut(s)	467, 768, 825
PinAI	ACCGGT	2 cut(s)	47, 452
PkrI	GCNGC	2 cut(s)	820, 977
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
PscI	ACATGT	1 cut(s)	600
Psp6I	CCWGG	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	86
PspN4I	GGNNCC	4 cut(s)	46, 330, 913, 1036
PstNI	CAGNNNCTG	1 cut(s)	1023
PsuI	RGATCY	3 cut(s)	258, 579, 880
RsaI	GTAC	5 cut(s)	46, 434, 448, 887, 1016
RsaNI	GTAC	5 cut(s)	45, 433, 447, 886, 1015
RseI	CAYNNNNRTG	1 cut(s)	129
SapI	GCTCTTC	2 cut(s)	297, 712
SaqAI	TTAA	3 cut(s)	336, 387, 987
SatI	GCNGC	2 cut(s)	819, 976
Sau3AI	GATC	5 cut(s)	258, 579, 880, 1026, 1078
SchI	GAGTC	1 cut(s)	358
ScrFI	CCNGG	1 cut(s)	88
SduI	GDGCHC	2 cut(s)	309, 903
SfaNI	GCATC	4 cut(s)	70, 148, 274, 764
SfuI	TTCGAA	1 cut(s)	1093
SmiMI	CAYNNNNRTG	1 cut(s)	129
Sse9I	AATT	5 cut(s)	627, 728, 1074, 1095, 1111
SsiI	CCGC	2 cut(s)	396, 622
StyD4I	CCNGG	1 cut(s)	86
TaaI	ACNGT	4 cut(s)	493, 890, 941, 1019
TaiI	ACGT	1 cut(s)	556
TaqI	TCGA	2 cut(s)	714, 1093
TasI	AATT	5 cut(s)	627, 728, 1074, 1095, 1111
TatI	WGTACW	1 cut(s)	1014
TfiI	GAWTC	3 cut(s)	467, 768, 825
Tru1I	TTAA	3 cut(s)	336, 387, 987
Tru9I	TTAA	3 cut(s)	336, 387, 987
TscAI	CASTG	5 cut(s)	109, 445, 496, 910, 1024
TseFI	GTSAC	2 cut(s)	35, 554
TseI	GCWGC	2 cut(s)	818, 975
Tsp45I	GTSAC	2 cut(s)	35, 554
TspDTI	ATGAA	6 cut(s)	161, 189, 590, 741, 869, 995
TspGWI	ACGGA	1 cut(s)	524
TspRI	CASTG	5 cut(s)	109, 445, 496, 910, 1024
XapI	RAATTY	1 cut(s)	1095
XceI	RCATGY	2 cut(s)	604, 1109
Zsp2I	ATGCAT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.