AT1G49380

cytochrome c biogenesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009612
Physical Location & Seq
Forward (+)
18276643 .. 18279532
2890 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G49380.1

Sequence Viewer

Length: 1644 bp
ATGATTGTAACACTAAACCCTAAGATTCTCCATTTCTCCAAAATCCATCCTTTTTCTCGACCTTCTTCGTATCTCTGTAGAACTCGAAATGTGTCTCTGATAACCAATTGCAAGCTTCAGAAGCCTCAAGATGGTAATCAGAGAAGTAGTAGTAACAGAAATCTCACGAAGACCATTTCACTTTCCGATTCAGCACCGCCGGTTACGGAGGAGACCGGCGATGGAATTGTTAAGGGAGGTGGTAATGGTGGAGGAGGAGGAGGAGACGGAAGAGGAGGATTAGGGTTTTTGAAGATTTTACCAAGAAAGGTTTTGTCAGTTTTGTCGAATTTGCCACTTGCTATTACAGAAATGTTCACCATTGCTGCTCTCATGGCTCTTGGGACTGTGATTGAACAAGGTGAAACCCCTGATTTCTATTTCCAAAAGTATCCAGAGGATAATCCTGTACTAGGGTTCTTCACTTGGAGATGGATTTCCACACTTGGATTGGATCATATGTACTCTGCTCCTATTTTTCTTGGGATGTTGGTTCTTTTAGCAGCTTCACTTATGGCCTGTACTTATACTACTCAGATACCTTTGGTTAAGGTTGCAAGAAGATGGAGTTTTATGAAGTCAGATGAGGCAATTAAAAAGCAGGAGTTTGCAGATACTCTTCCTAGAGCTTCCATTCAAGACTTGGGAATGATTTTGATGGGTGATGGATTTGAGGTGTTTATGAAGGGTCCTTCATTGTATGCTTTTAAAGGTTTGGCTGGTCGATTTGCACCTATTGGAGTACATATAGCAATGCTTCTGATTATGGTGGGTGGAACTCTTAGTGCTACCGGGAGCTTTAGAGGCTCGGTCACAGTTCCTCAAGGACTAAATTTTGTCATGGGAGATGTCTTAGCACCAATTGGGTTTTTCTCAATTCCAACAGATGCTTTTAATACCGAAGTTCATGTTAATCGATTCACCATGGATTATTATGACAGTGGAGAAGTCTCACAGTTTCACTCTGATCTTTCACTACGTGACCTTAATGGGAAAGAGGTTTTGAGAAAAACAATTAGCGTTAATGATCCCTTGAGATATGGTGGGGTCACCGTATACCAGACAGATTGGAGTTTCTCAGCCTTGCAGGTGACAAAGGATGGTGAAGGACCATTCAACTTGGCTATGGCACCAATTAAGATCAATGGAGACAAGAAATTATATGGGACCTTCTTACCTGTTGGTGATACTAATGCTCCCAATGTCAAAGGAATATCTATGCTAGCTCGGGATCTACAATCCATTGTTGTGTACGATTTGGACGGAAAATTCGCTGGAATAAGGAGACCAAGCTCGAAGCTTCCCATTGAGATCAATGGTATGAAGATTGTTATTGAAGATGCAATTGGAAGCACTGGCCTTGAGTTAAAGACTGACCCAGGAGTACCAGTGGTCTATGCTGGTTTTGGTGCTCTAATGCTCACAACCTGTATCAGTTACTTATCTCATTCACAGATATGGGCACTACAAAACGGAACAGCATTGGTCGTAGGGGGAAAAACAAACAGAGCCAAGAACCAATTCCCTGATGACATGAATCGTTTGCTCGATCAAGTTCCGGAGTTAATCAAGAAGAATACTTCAGTTGTCTCTGAGCAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ResB

Protein Analysis

547

Amino Acids

59.39

Weight (kDa)

8.64

Isoelectric Point (pI)

36.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResB PF05140 113 - 375 8.7e-54 ResB-like family
ResB PF05140 418 - 525 6.9e-10 ResB-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1117
Acc36I ACCTGC 1 cut(s) 1117
AccB1I GGYRCC 1 cut(s) 1168
AccI GTMKAC 1 cut(s) 1095
AccIII TCCGGA 1 cut(s) 1597
AciI CCGC 1 cut(s) 197
AclWI GGATC 3 cut(s) 501, 1061, 1278
AcsI RAATTY 3 cut(s) 328, 871, 1307
AcuI CTGAAG 2 cut(s) 101, 1605
AdeI CACNNNGTG 1 cut(s) 1019
AfaI GTAC 6 cut(s) 450, 503, 562, 783, 1292, 1425
AfiI CCNNNNNNNGG 2 cut(s) 131, 452
AgsI TTSAA 5 cut(s) 292, 395, 677, 1156, 1376
AjnI CCWGG 1 cut(s) 1417
AjuI GAANNNNNNNTTGG 4 cut(s) 1368, 1400, 1544, 1576
AluBI AGCT 7 cut(s) 115, 545, 668, 837, 1265, 1332, 1339
AluI AGCT 7 cut(s) 115, 545, 668, 837, 1265, 1332, 1339
Alw21I GWGCWC 1 cut(s) 1453
Alw26I GTCTC 7 cut(s) 99, 206, 258, 994, 1182, 1318, 1633
AlwI GGATC 3 cut(s) 501, 1061, 1278
Ama87I CYCGRG 1 cut(s) 1266
Aor13HI TCCGGA 1 cut(s) 1597
AoxI GGCC 2 cut(s) 555, 1396
ApeKI GCWGC 2 cut(s) 365, 542
ApoI RAATTY 3 cut(s) 328, 871, 1307
ArsI GACNNNNNNTTYG 2 cut(s) 1292, 1324
Asp700I GAANNNNTTC 1 cut(s) 1559
AspS9I GGNCC 3 cut(s) 728, 1148, 1206
AsuC2I CCSGG 1 cut(s) 832
AsuHPI GGTGA 8 cut(s) 349, 413, 713, 952, 1081, 1141, 1154, 1235
AsuNHI GCTAGC 1 cut(s) 1261
AvaI CYCGRG 1 cut(s) 1266
AvaII GGWCC 3 cut(s) 728, 1148, 1206
BaeGI GKGCMC 1 cut(s) 1504
BanI GGYRCC 1 cut(s) 1168
BbsI GAAGAC 1 cut(s) 176
Bbv12I GWGCWC 1 cut(s) 1453
BbvI GCAGC 2 cut(s) 352, 554
BccI CCATC 8 cut(s) 54, 125, 215, 465, 597, 691, 698, 1133
BciT130I CCWGG 1 cut(s) 1419
BciVI GTATCC 1 cut(s) 441
BcnI CCSGG 1 cut(s) 832
BcoDI GTCTC 7 cut(s) 99, 206, 258, 994, 1182, 1318, 1633
BfaI CTAG 3 cut(s) 452, 663, 1262
BfmI CTRYAG 1 cut(s) 76
BfuAI ACCTGC 1 cut(s) 1117
BfuI GTATCC 1 cut(s) 441
BisI GCNGC 2 cut(s) 366, 543
BlsI GCNGC 2 cut(s) 367, 544
Bme1390I CCNGG 2 cut(s) 832, 1419
Bme18I GGWCC 3 cut(s) 728, 1148, 1206
BmeT110I CYCGRG 1 cut(s) 1266
BmgT120I GGNCC 3 cut(s) 728, 1148, 1206
BmiI GGNNCC 3 cut(s) 729, 1170, 1207
BmrFI CCNGG 2 cut(s) 832, 1419
BmsI GCATC 2 cut(s) 916, 1369
BmtI GCTAGC 1 cut(s) 1265
BpiI GAAGAC 1 cut(s) 176
BpuEI CTTGAG 4 cut(s) 111, 846, 1093, 1421
BpuMI CCSGG 1 cut(s) 832
Bsa29I ATCGAT 1 cut(s) 955
BsaAI YACGTR 1 cut(s) 1019
BsaBI GATNNNNATC 1 cut(s) 135
BsaI GGTCTC 2 cut(s) 206, 1318
BsaJI CCNNGG 2 cut(s) 963, 1417
BsaWI WCCGGW 1 cut(s) 1597
BsaXI ACNNNNNCTCC 4 cut(s) 1219, 1249, 1413, 1443
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 452
Bse118I RCCGGY 2 cut(s) 199, 215
Bse1I ACTGG 2 cut(s) 1399, 1427
Bse3DI GCAATG 2 cut(s) 360, 798
Bse8I GATNNNNATC 1 cut(s) 135
BseAI TCCGGA 1 cut(s) 1597
BseBI CCWGG 1 cut(s) 1419
BseCI ATCGAT 1 cut(s) 955
BseDI CCNNGG 2 cut(s) 963, 1417
BseGI GGATG 3 cut(s) 46, 531, 1144
BseJI GATNNNNATC 1 cut(s) 135
BseLI CCNNNNNNNGG 2 cut(s) 131, 452
BseMI GCAATG 2 cut(s) 360, 798
BseMII CTCAG 3 cut(s) 587, 1131, 1623
BseNI ACTGG 2 cut(s) 1399, 1427
BseRI GAGGAG 6 cut(s) 224, 267, 270, 273, 276, 288
BseSI GKGCMC 1 cut(s) 1504
BseXI GCAGC 2 cut(s) 352, 554
BshFI GGCC 2 cut(s) 557, 1398
BshNI GGYRCC 1 cut(s) 1168
BshVI ATCGAT 1 cut(s) 955
BsiHKAI GWGCWC 1 cut(s) 1453
BsiHKCI CYCGRG 1 cut(s) 1266
BsiSI CCGG 4 cut(s) 200, 216, 831, 1598
BslFI GGGAC 2 cut(s) 397, 1219
BslI CCNNNNNNNGG 2 cut(s) 131, 452
BsmAI GTCTC 7 cut(s) 99, 206, 258, 994, 1182, 1318, 1633
BsmBI CGTCTC 1 cut(s) 258
BsmFI GGGAC 2 cut(s) 397, 1219
BsnI GGCC 2 cut(s) 557, 1398
Bso31I GGTCTC 2 cut(s) 206, 1318
BsoBI CYCGRG 1 cut(s) 1266
Bsp1286I GDGCHC 2 cut(s) 1453, 1504
Bsp13I TCCGGA 1 cut(s) 1597
Bsp143I GATC 7 cut(s) 493, 1006, 1066, 1179, 1270, 1350, 1588
Bsp19I CCATGG 1 cut(s) 963
BspACI CCGC 1 cut(s) 197
BspANI GGCC 2 cut(s) 557, 1398
BspCNI CTCAG 3 cut(s) 586, 1130, 1624
BspDI ATCGAT 1 cut(s) 955
BspEI TCCGGA 1 cut(s) 1597
BspLI GGNNCC 3 cut(s) 729, 1170, 1207
BspMI ACCTGC 1 cut(s) 1117
BspOI GCTAGC 1 cut(s) 1265
BspPI GGATC 3 cut(s) 501, 1061, 1278
BspT107I GGYRCC 1 cut(s) 1168
BspTNI GGTCTC 2 cut(s) 206, 1318
BsrDI GCAATG 2 cut(s) 360, 798
BsrFI RCCGGY 2 cut(s) 199, 215
BsrI ACTGG 2 cut(s) 1399, 1427
BssAI RCCGGY 2 cut(s) 199, 215
BssECI CCNNGG 2 cut(s) 963, 1417
BssMI GATC 7 cut(s) 493, 1006, 1066, 1179, 1270, 1350, 1588
BssNAI GTATAC 1 cut(s) 1096
BssT1I CCWWGG 1 cut(s) 963
Bst1107I GTATAC 1 cut(s) 1096
Bst2UI CCWGG 1 cut(s) 1419
Bst4CI ACNGT 5 cut(s) 388, 856, 980, 996, 1093
Bst6I CTCTTC 2 cut(s) 265, 663
BstBAI YACGTR 1 cut(s) 1019
BstC8I GCNNGC 2 cut(s) 113, 1263
BstDEI CTNAG 6 cut(s) 21, 573, 821, 892, 1117, 1632
BstDSI CCRYGG 1 cut(s) 963
BstEII GGTNACC 1 cut(s) 1087
BstENI CCTNNNNNAGG 1 cut(s) 450
BstF5I GGATG 3 cut(s) 46, 531, 1144
BstKTI GATC 7 cut(s) 496, 1009, 1069, 1182, 1273, 1353, 1591
BstMAI GTCTC 7 cut(s) 99, 206, 258, 994, 1182, 1318, 1633
BstMBI GATC 7 cut(s) 493, 1006, 1066, 1179, 1270, 1350, 1588
BstMWI GCNNNNNNNGC 3 cut(s) 121, 374, 843
BstNI CCWGG 1 cut(s) 1419
BstPI GGTNACC 1 cut(s) 1087
BstSCI CCNGG 2 cut(s) 830, 1417
BstSFI CTRYAG 1 cut(s) 76
BstSLI GKGCMC 1 cut(s) 1504
BstV1I GCAGC 2 cut(s) 352, 554
BstV2I GAAGAC 1 cut(s) 176
BstX2I RGATCY 1 cut(s) 1270
BstYI RGATCY 1 cut(s) 1270
BstZ17I GTATAC 1 cut(s) 1096
Bsu15I ATCGAT 1 cut(s) 955
BsuI GTATCC 1 cut(s) 441
BsuRI GGCC 2 cut(s) 557, 1398
BsuTUI ATCGAT 1 cut(s) 955
BtgI CCRYGG 1 cut(s) 963
BtgZI GCGATG 1 cut(s) 234
BtsCI GGATG 3 cut(s) 46, 531, 1144
BtsIMutI CAGTG 3 cut(s) 985, 1392, 1434
BveI ACCTGC 1 cut(s) 1117
Cac8I GCNNGC 2 cut(s) 113, 1263
Cfr10I RCCGGY 2 cut(s) 199, 215
Cfr13I GGNCC 3 cut(s) 728, 1148, 1206
ClaI ATCGAT 1 cut(s) 955
Csp6I GTAC 6 cut(s) 449, 502, 561, 782, 1291, 1424
CviAII CATG 5 cut(s) 373, 880, 947, 964, 1573
CviQI GTAC 6 cut(s) 449, 502, 561, 782, 1291, 1424
DdeI CTNAG 6 cut(s) 21, 573, 821, 892, 1117, 1632
DpnI GATC 7 cut(s) 495, 1008, 1068, 1181, 1272, 1352, 1590
DpnII GATC 7 cut(s) 493, 1006, 1066, 1179, 1270, 1350, 1588
DraI TTTAAA 1 cut(s) 748
DraIII CACNNNGTG 1 cut(s) 1019
Eam1104I CTCTTC 2 cut(s) 265, 663
EarI CTCTTC 2 cut(s) 265, 663
Eco130I CCWWGG 1 cut(s) 963
Eco31I GGTCTC 2 cut(s) 206, 1318
Eco47I GGWCC 3 cut(s) 728, 1148, 1206
Eco57I CTGAAG 2 cut(s) 101, 1605
Eco88I CYCGRG 1 cut(s) 1266
Eco91I GGTNACC 1 cut(s) 1087
EcoNI CCTNNNNNAGG 1 cut(s) 450
EcoO109I RGGNCCY 2 cut(s) 728, 1206
EcoO65I GGTNACC 1 cut(s) 1087
EcoRII CCWGG 1 cut(s) 1417
EcoT14I CCWWGG 1 cut(s) 963
ErhI CCWWGG 1 cut(s) 963
Esp3I CGTCTC 1 cut(s) 258
FaeI CATG 5 cut(s) 376, 883, 950, 967, 1576
FaqI GGGAC 2 cut(s) 397, 1219
FatI CATG 5 cut(s) 372, 879, 946, 963, 1572
FauNDI CATATG 1 cut(s) 498
FblI GTMKAC 1 cut(s) 1095
Fnu4HI GCNGC 2 cut(s) 366, 543
FokI GGATG 3 cut(s) 33, 538, 1151
Fsp4HI GCNGC 2 cut(s) 366, 543
FspBI CTAG 3 cut(s) 452, 663, 1262
GluI GCNGC 2 cut(s) 366, 543
HaeIII GGCC 2 cut(s) 557, 1398
HapII CCGG 4 cut(s) 200, 216, 831, 1598
Hin1II CATG 5 cut(s) 376, 883, 950, 967, 1576
HindIII AAGCTT 2 cut(s) 113, 1337
HinfI GANTC 4 cut(s) 25, 188, 957, 1576
HpaII CCGG 4 cut(s) 200, 216, 831, 1598
HphI GGTGA 8 cut(s) 349, 413, 713, 952, 1081, 1141, 1154, 1235
Hpy166II GTNNAC 3 cut(s) 357, 1096, 1291
Hpy188I TCNGA 9 cut(s) 99, 120, 141, 187, 576, 622, 801, 1006, 1633
Hpy188III TCNNGA 9 cut(s) 57, 128, 166, 434, 677, 1268, 1598, 1609, 1641
Hpy8I GTNNAC 3 cut(s) 357, 1096, 1291
HpyAV CCTTC 5 cut(s) 72, 718, 741, 1139, 1219
HpyCH4III ACNGT 5 cut(s) 388, 856, 980, 996, 1093
HpyCH4IV ACGT 1 cut(s) 1018
HpyCH4V TGCA 6 cut(s) 111, 596, 650, 770, 1126, 1382
HpyF10VI GCNNNNNNNGC 3 cut(s) 121, 374, 843
HpyF3I CTNAG 6 cut(s) 21, 573, 821, 892, 1117, 1632
HpySE526I ACGT 1 cut(s) 1018
Hsp92II CATG 5 cut(s) 376, 883, 950, 967, 1576
Kpn2I TCCGGA 1 cut(s) 1597
Kzo9I GATC 7 cut(s) 493, 1006, 1066, 1179, 1270, 1350, 1588
LmnI GCTCC 3 cut(s) 514, 834, 1240
Lsp1109I GCAGC 2 cut(s) 352, 554
LweI GCATC 2 cut(s) 916, 1369
MaeI CTAG 3 cut(s) 452, 663, 1262
MaeII ACGT 1 cut(s) 1018
MaeIII GTNAC 8 cut(s) 7, 152, 202, 850, 1019, 1087, 1129, 1475
MalI GATC 7 cut(s) 495, 1008, 1068, 1181, 1272, 1352, 1590
MboI GATC 7 cut(s) 493, 1006, 1066, 1179, 1270, 1350, 1588
MfeI CAATTG 3 cut(s) 106, 900, 1383
MflI RGATCY 1 cut(s) 1270
MhlI GDGCHC 2 cut(s) 1453, 1504
MmeI TCCRAC 1 cut(s) 944
MroI TCCGGA 1 cut(s) 1597
MroXI GAANNNNTTC 1 cut(s) 1559
MslI CAYNNNNRTG 2 cut(s) 1286, 1495
MspI CCGG 4 cut(s) 200, 216, 831, 1598
MspR9I CCNGG 2 cut(s) 832, 1419
MunI CAATTG 3 cut(s) 106, 900, 1383
MvaI CCWGG 1 cut(s) 1419
MwoI GCNNNNNNNGC 3 cut(s) 121, 374, 843
NciI CCSGG 1 cut(s) 832
NcoI CCATGG 1 cut(s) 963
NdeI CATATG 1 cut(s) 498
NdeII GATC 7 cut(s) 493, 1006, 1066, 1179, 1270, 1350, 1588
NheI GCTAGC 1 cut(s) 1261
NlaIII CATG 5 cut(s) 376, 883, 950, 967, 1576
NlaIV GGNNCC 3 cut(s) 729, 1170, 1207
NmuCI GTSAC 4 cut(s) 850, 1019, 1087, 1129
PaqCI CACCTGC 1 cut(s) 1117
PdmI GAANNNNTTC 1 cut(s) 1559
PfeI GAWTC 4 cut(s) 25, 188, 957, 1576
PkrI GCNGC 2 cut(s) 367, 544
Ppu21I YACGTR 1 cut(s) 1019
PpuMI RGGWCCY 2 cut(s) 728, 1206
Psp5II RGGWCCY 2 cut(s) 728, 1206
Psp6I CCWGG 1 cut(s) 1417
PspEI GGTNACC 1 cut(s) 1087
PspGI CCWGG 1 cut(s) 1417
PspN4I GGNNCC 3 cut(s) 729, 1170, 1207
PspPI GGNCC 3 cut(s) 728, 1148, 1206
PspPPI RGGWCCY 2 cut(s) 728, 1206
PsuI RGATCY 1 cut(s) 1270
RsaI GTAC 6 cut(s) 450, 503, 562, 783, 1292, 1425
RsaNI GTAC 6 cut(s) 449, 502, 561, 782, 1291, 1424
RseI CAYNNNNRTG 2 cut(s) 1286, 1495
SatI GCNGC 2 cut(s) 366, 543
Sau3AI GATC 7 cut(s) 493, 1006, 1066, 1179, 1270, 1350, 1588
Sau96I GGNCC 3 cut(s) 728, 1148, 1206
ScrFI CCNGG 2 cut(s) 832, 1419
SduI GDGCHC 2 cut(s) 1453, 1504
SfaNI GCATC 2 cut(s) 916, 1369
SfcI CTRYAG 1 cut(s) 76
SinI GGWCC 3 cut(s) 728, 1148, 1206
SmiMI CAYNNNNRTG 2 cut(s) 1286, 1495
SmlI CTYRAG 4 cut(s) 126, 861, 1072, 1400
SmoI CTYRAG 4 cut(s) 126, 861, 1072, 1400
SsiI CCGC 1 cut(s) 197
SspMI CTAG 3 cut(s) 452, 663, 1262
StyD4I CCNGG 2 cut(s) 830, 1417
StyI CCWWGG 1 cut(s) 963
TaaI ACNGT 5 cut(s) 388, 856, 980, 996, 1093
TaiI ACGT 1 cut(s) 1021
TaqI TCGA 7 cut(s) 58, 85, 326, 763, 955, 1334, 1587
TaqII GACCGA 1 cut(s) 838
TatI WGTACW 4 cut(s) 448, 501, 560, 781
TfiI GAWTC 4 cut(s) 25, 188, 957, 1576
TscAI CASTG 3 cut(s) 985, 1399, 1434
TseFI GTSAC 4 cut(s) 850, 1019, 1087, 1129
TseI GCWGC 2 cut(s) 365, 542
Tsp45I GTSAC 4 cut(s) 850, 1019, 1087, 1129
TspDTI ATGAA 6 cut(s) 629, 723, 737, 935, 1376, 1589
TspGWI ACGGA 4 cut(s) 221, 282, 1317, 1527
TspRI CASTG 3 cut(s) 985, 1399, 1434
VpaK11BI GGWCC 3 cut(s) 728, 1148, 1206
XagI CCTNNNNNAGG 1 cut(s) 450
XapI RAATTY 3 cut(s) 328, 871, 1307
XcmI CCANNNNNNNNNTGG 2 cut(s) 487, 679
XmiI GTMKAC 1 cut(s) 1095
XmnI GAANNNNTTC 1 cut(s) 1559
XspI CTAG 3 cut(s) 452, 663, 1262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.