Cytochrome c biogenesis protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G49380 |
| fragaria_vesca | FvH4_2g07950 FvH4_2g07950 FvH4_2g07950 FvH4_2g07950 |
| malus_domestica | MD05G1072000.v1.1 MD10G1082600.v1.1 |
| prunus_persica | Prupe.8G105700_v2.0.a1 |
| pyrus_communis | pycom10g06510 |
| rosa_chinensis | RchiOBHm_Chr6g0262411 |
| rosa_laevigata | RLG00000014431 |
| rosa_multiflora | Rmu_ssc0000195.1_g000001 |
| rosa_roxburghii | Rroxscaffold_177G00434470 Rroxscaffold_7G00205300 |
| rosa_rugosa | Rorug05G0596800 Rorug05G0596900 Rorug05G0597000 |
| rosa_samantha | Rh6AG117800 Rh6BG111800 Rh6CG109800 Rh6DG099400 |
| rosa_wichuraiana | Rw6G010220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 263, 1198 |
| AccI | GTMKAC | 2 cut(s) | 40, 944 |
| AciI | CCGC | 4 cut(s) | 236, 239, 261, 1425 |
| AclWI | GGATC | 1 cut(s) | 1124 |
| AcsI | RAATTY | 4 cut(s) | 486, 901, 1337, 1589 |
| AcuI | CTGAAG | 3 cut(s) | 182, 1190, 1457 |
| AcyI | GRCGYC | 1 cut(s) | 264 |
| AfaI | GTAC | 3 cut(s) | 157, 533, 813 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 273, 297, 482, 670, 780 |
| AgsI | TTSAA | 9 cut(s) | 76, 88, 124, 707, 754, 871, 901, 964, 1379 |
| AhlI | ACTAGT | 1 cut(s) | 1670 |
| AjnI | CCWGG | 1 cut(s) | 567 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 478, 510 |
| AluBI | AGCT | 6 cut(s) | 284, 698, 734, 867, 1228, 1369 |
| AluI | AGCT | 6 cut(s) | 284, 698, 734, 867, 1228, 1369 |
| Alw21I | GWGCWC | 1 cut(s) | 1483 |
| Alw26I | GTCTC | 2 cut(s) | 404, 1212 |
| AlwI | GGATC | 1 cut(s) | 1124 |
| Ama87I | CYCGRG | 1 cut(s) | 1447 |
| AoxI | GGCC | 7 cut(s) | 435, 510, 585, 657, 925, 1178, 1530 |
| ApeKI | GCWGC | 3 cut(s) | 328, 572, 826 |
| ApoI | RAATTY | 4 cut(s) | 486, 901, 1337, 1589 |
| AspLEI | GCGC | 2 cut(s) | 235, 266 |
| AspS9I | GGNCC | 6 cut(s) | 436, 511, 758, 926, 1178, 1530 |
| AsuC2I | CCSGG | 2 cut(s) | 1448, 1449 |
| AsuHPI | GGTGA | 5 cut(s) | 142, 319, 443, 1111, 1598 |
| AvaI | CYCGRG | 1 cut(s) | 1447 |
| AvaII | GGWCC | 1 cut(s) | 758 |
| BanI | GGYRCC | 2 cut(s) | 263, 1198 |
| BbsI | GAAGAC | 3 cut(s) | 170, 642, 1445 |
| Bbv12I | GWGCWC | 1 cut(s) | 1483 |
| BbvCI | CCTCAGC | 1 cut(s) | 1073 |
| BbvI | GCAGC | 3 cut(s) | 315, 559, 813 |
| BccI | CCATC | 8 cut(s) | 75, 304, 495, 627, 668, 937, 1379, 1535 |
| BceAI | ACGGC | 1 cut(s) | 226 |
| BciT130I | CCWGG | 1 cut(s) | 569 |
| BclI | TGATCA | 4 cut(s) | 424, 523, 1161, 1324 |
| BcnI | CCSGG | 2 cut(s) | 1448, 1449 |
| BcoDI | GTCTC | 2 cut(s) | 404, 1212 |
| BcuI | ACTAGT | 1 cut(s) | 1670 |
| BfaI | CTAG | 3 cut(s) | 614, 1671, 1678 |
| BfoI | RGCGCY | 2 cut(s) | 236, 267 |
| BglII | AGATCT | 1 cut(s) | 1300 |
| BisI | GCNGC | 6 cut(s) | 236, 239, 262, 329, 573, 827 |
| BlsI | GCNGC | 6 cut(s) | 237, 240, 263, 330, 574, 828 |
| Bme1390I | CCNGG | 3 cut(s) | 569, 1448, 1449 |
| Bme18I | GGWCC | 1 cut(s) | 758 |
| BmeT110I | CYCGRG | 1 cut(s) | 1447 |
| BmgT120I | GGNCC | 6 cut(s) | 436, 511, 758, 926, 1178, 1530 |
| BmiI | GGNNCC | 7 cut(s) | 265, 438, 759, 1200, 1237, 1390, 1626 |
| BmrFI | CCNGG | 3 cut(s) | 569, 1448, 1449 |
| BmrI | ACTGGG | 1 cut(s) | 870 |
| BmsI | GCATC | 5 cut(s) | 584, 946, 1252, 1399, 1509 |
| BmuI | ACTGGG | 1 cut(s) | 870 |
| BpiI | GAAGAC | 3 cut(s) | 170, 642, 1445 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1073 |
| BpuEI | CTTGAG | 2 cut(s) | 44, 156 |
| BpuMI | CCSGG | 2 cut(s) | 1448, 1449 |
| Bsa29I | ATCGAT | 1 cut(s) | 1383 |
| BsaHI | GRCGYC | 1 cut(s) | 264 |
| BsaI | GGTCTC | 1 cut(s) | 404 |
| BsaJI | CCNNGG | 3 cut(s) | 332, 514, 1447 |
| BsaWI | WCCGGW | 1 cut(s) | 269 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1411, 1441, 1443, 1473 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 273, 297, 482, 670, 780 |
| Bse118I | RCCGGY | 1 cut(s) | 1456 |
| Bse1I | ACTGG | 1 cut(s) | 865 |
| Bse3DI | GCAATG | 2 cut(s) | 390, 828 |
| BseBI | CCWGG | 1 cut(s) | 569 |
| BseCI | ATCGAT | 1 cut(s) | 1383 |
| BseDI | CCNNGG | 3 cut(s) | 332, 514, 1447 |
| BseGI | GGATG | 1 cut(s) | 660 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 273, 297, 482, 670, 780 |
| BseMI | GCAATG | 2 cut(s) | 390, 828 |
| BseMII | CTCAG | 4 cut(s) | 128, 645, 960, 1064 |
| BseNI | ACTGG | 1 cut(s) | 865 |
| BseRI | GAGGAG | 1 cut(s) | 263 |
| BseXI | GCAGC | 3 cut(s) | 315, 559, 813 |
| BsgI | GTGCAG | 1 cut(s) | 574 |
| BshFI | GGCC | 7 cut(s) | 437, 512, 587, 659, 927, 1180, 1532 |
| BshNI | GGYRCC | 2 cut(s) | 263, 1198 |
| BshVI | ATCGAT | 1 cut(s) | 1383 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1483 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1447 |
| BsiSI | CCGG | 3 cut(s) | 270, 1448, 1457 |
| BslFI | GGGAC | 4 cut(s) | 49, 87, 290, 771 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 273, 297, 482, 670, 780 |
| BsmAI | GTCTC | 2 cut(s) | 404, 1212 |
| BsmFI | GGGAC | 4 cut(s) | 49, 87, 290, 771 |
| BsnI | GGCC | 7 cut(s) | 437, 512, 587, 659, 927, 1180, 1532 |
| Bso31I | GGTCTC | 1 cut(s) | 404 |
| BsoBI | CYCGRG | 1 cut(s) | 1447 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1483 |
| BspACI | CCGC | 4 cut(s) | 236, 239, 261, 1425 |
| BspANI | GGCC | 7 cut(s) | 437, 512, 587, 659, 927, 1180, 1532 |
| BspCNI | CTCAG | 4 cut(s) | 127, 646, 961, 1065 |
| BspDI | ATCGAT | 1 cut(s) | 1383 |
| BspLI | GGNNCC | 7 cut(s) | 265, 438, 759, 1200, 1237, 1390, 1626 |
| BspPI | GGATC | 1 cut(s) | 1124 |
| BspT107I | GGYRCC | 2 cut(s) | 263, 1198 |
| BspTNI | GGTCTC | 1 cut(s) | 404 |
| BsrDI | GCAATG | 2 cut(s) | 390, 828 |
| BsrFI | RCCGGY | 1 cut(s) | 1456 |
| BsrI | ACTGG | 1 cut(s) | 865 |
| BssAI | RCCGGY | 1 cut(s) | 1456 |
| BssECI | CCNNGG | 3 cut(s) | 332, 514, 1447 |
| BssNI | GRCGYC | 1 cut(s) | 264 |
| BssT1I | CCWWGG | 1 cut(s) | 514 |
| Bst2UI | CCWGG | 1 cut(s) | 569 |
| Bst4CI | ACNGT | 2 cut(s) | 886, 1010 |
| Bst6I | CTCTTC | 4 cut(s) | 77, 317, 1209, 1593 |
| BstACI | GRCGYC | 1 cut(s) | 264 |
| BstC8I | GCNNGC | 2 cut(s) | 589, 1613 |
| BstDEI | CTNAG | 6 cut(s) | 114, 654, 851, 969, 1054, 1073 |
| BstEII | GGTNACC | 1 cut(s) | 148 |
| BstF5I | GGATG | 1 cut(s) | 660 |
| BstH2I | RGCGCY | 2 cut(s) | 236, 267 |
| BstHHI | GCGC | 2 cut(s) | 235, 266 |
| BstMAI | GTCTC | 2 cut(s) | 404, 1212 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 560, 569, 1674 |
| BstNI | CCWGG | 1 cut(s) | 569 |
| BstPI | GGTNACC | 1 cut(s) | 148 |
| BstSCI | CCNGG | 3 cut(s) | 567, 1446, 1447 |
| BstV1I | GCAGC | 3 cut(s) | 315, 559, 813 |
| BstV2I | GAAGAC | 3 cut(s) | 170, 642, 1445 |
| BstX2I | RGATCY | 1 cut(s) | 1300 |
| BstYI | RGATCY | 1 cut(s) | 1300 |
| Bsu15I | ATCGAT | 1 cut(s) | 1383 |
| BsuRI | GGCC | 7 cut(s) | 437, 512, 587, 659, 927, 1180, 1532 |
| BsuTUI | ATCGAT | 1 cut(s) | 1383 |
| BtsCI | GGATG | 1 cut(s) | 660 |
| BtsI | GCAGTG | 2 cut(s) | 1151, 1557 |
| BtsIMutI | CAGTG | 5 cut(s) | 966, 1015, 1093, 1151, 1557 |
| Cac8I | GCNNGC | 2 cut(s) | 589, 1613 |
| CfoI | GCGC | 2 cut(s) | 235, 266 |
| Cfr10I | RCCGGY | 1 cut(s) | 1456 |
| Cfr13I | GGNCC | 6 cut(s) | 436, 511, 758, 926, 1178, 1530 |
| Cfr9I | CCCGGG | 1 cut(s) | 1447 |
| ClaI | ATCGAT | 1 cut(s) | 1383 |
| Csp6I | GTAC | 3 cut(s) | 156, 532, 812 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 879, 914 |
| CviAII | CATG | 4 cut(s) | 36, 403, 977, 994 |
| CviQI | GTAC | 3 cut(s) | 156, 532, 812 |
| DdeI | CTNAG | 6 cut(s) | 114, 654, 851, 969, 1054, 1073 |
| DinI | GGCGCC | 1 cut(s) | 265 |
| Eam1104I | CTCTTC | 4 cut(s) | 77, 317, 1209, 1593 |
| EarI | CTCTTC | 4 cut(s) | 77, 317, 1209, 1593 |
| Eco130I | CCWWGG | 1 cut(s) | 514 |
| Eco31I | GGTCTC | 1 cut(s) | 404 |
| Eco47I | GGWCC | 1 cut(s) | 758 |
| Eco57I | CTGAAG | 3 cut(s) | 182, 1190, 1457 |
| Eco88I | CYCGRG | 1 cut(s) | 1447 |
| Eco91I | GGTNACC | 1 cut(s) | 148 |
| EcoO109I | RGGNCCY | 3 cut(s) | 436, 758, 1178 |
| EcoO65I | GGTNACC | 1 cut(s) | 148 |
| EcoRII | CCWGG | 1 cut(s) | 567 |
| EcoT14I | CCWWGG | 1 cut(s) | 514 |
| EgeI | GGCGCC | 1 cut(s) | 265 |
| EheI | GGCGCC | 1 cut(s) | 265 |
| ErhI | CCWWGG | 1 cut(s) | 514 |
| FaeI | CATG | 4 cut(s) | 39, 406, 980, 997 |
| FaqI | GGGAC | 4 cut(s) | 49, 87, 290, 771 |
| FatI | CATG | 4 cut(s) | 35, 402, 976, 993 |
| FauNDI | CATATG | 1 cut(s) | 528 |
| FbaI | TGATCA | 4 cut(s) | 424, 523, 1161, 1324 |
| FblI | GTMKAC | 2 cut(s) | 40, 944 |
| Fnu4HI | GCNGC | 6 cut(s) | 236, 239, 262, 329, 573, 827 |
| FokI | GGATG | 1 cut(s) | 647 |
| Fsp4HI | GCNGC | 6 cut(s) | 236, 239, 262, 329, 573, 827 |
| FspBI | CTAG | 3 cut(s) | 614, 1671, 1678 |
| GlaI | GCGC | 2 cut(s) | 234, 265 |
| GluI | GCNGC | 6 cut(s) | 236, 239, 262, 329, 573, 827 |
| HaeII | RGCGCY | 2 cut(s) | 236, 267 |
| HaeIII | GGCC | 7 cut(s) | 437, 512, 587, 659, 927, 1180, 1532 |
| HapII | CCGG | 3 cut(s) | 270, 1448, 1457 |
| HhaI | GCGC | 2 cut(s) | 235, 266 |
| Hin1I | GRCGYC | 1 cut(s) | 264 |
| Hin1II | CATG | 4 cut(s) | 39, 406, 980, 997 |
| Hin6I | GCGC | 2 cut(s) | 233, 264 |
| HinP1I | GCGC | 2 cut(s) | 233, 264 |
| HindIII | AAGCTT | 2 cut(s) | 1226, 1367 |
| HinfI | GANTC | 3 cut(s) | 1473, 1606, 1640 |
| HpaII | CCGG | 3 cut(s) | 270, 1448, 1457 |
| HphI | GGTGA | 5 cut(s) | 142, 319, 443, 1111, 1598 |
| Hpy166II | GTNNAC | 3 cut(s) | 41, 945, 982 |
| Hpy188I | TCNGA | 7 cut(s) | 226, 288, 413, 655, 682, 1209, 1663 |
| Hpy188III | TCNNGA | 7 cut(s) | 173, 664, 707, 751, 1328, 1595, 1628 |
| Hpy8I | GTNNAC | 3 cut(s) | 41, 945, 982 |
| Hpy99I | CGWCG | 1 cut(s) | 1356 |
| HpyAV | CCTTC | 9 cut(s) | 94, 221, 247, 748, 771, 1057, 1169, 1249, 1325 |
| HpyCH4III | ACNGT | 2 cut(s) | 886, 1010 |
| HpyCH4V | TGCA | 9 cut(s) | 554, 575, 591, 626, 646, 857, 1156, 1412, 1500 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 560, 569, 1674 |
| HpyF3I | CTNAG | 6 cut(s) | 114, 654, 851, 969, 1054, 1073 |
| Hsp92I | GRCGYC | 1 cut(s) | 264 |
| Hsp92II | CATG | 4 cut(s) | 39, 406, 980, 997 |
| HspAI | GCGC | 2 cut(s) | 233, 264 |
| KasI | GGCGCC | 1 cut(s) | 263 |
| Ksp22I | TGATCA | 4 cut(s) | 424, 523, 1161, 1324 |
| LmnI | GCTCC | 7 cut(s) | 230, 289, 731, 864, 875, 1270, 1394 |
| Lsp1109I | GCAGC | 3 cut(s) | 315, 559, 813 |
| LweI | GCATC | 5 cut(s) | 584, 946, 1252, 1399, 1509 |
| MaeI | CTAG | 3 cut(s) | 614, 1671, 1678 |
| MaeIII | GTNAC | 2 cut(s) | 148, 880 |
| MfeI | CAATTG | 4 cut(s) | 1157, 1311, 1374, 1413 |
| MflI | RGATCY | 1 cut(s) | 1300 |
| MhlI | GDGCHC | 1 cut(s) | 1483 |
| Mly113I | GGCGCC | 1 cut(s) | 264 |
| MmeI | TCCRAC | 5 cut(s) | 225, 311, 974, 1231, 1324 |
| MseI | TTAA | 3 cut(s) | 1103, 1185, 1275 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1525 |
| MspI | CCGG | 3 cut(s) | 270, 1448, 1457 |
| MspR9I | CCNGG | 3 cut(s) | 569, 1448, 1449 |
| MunI | CAATTG | 4 cut(s) | 1157, 1311, 1374, 1413 |
| MvaI | CCWGG | 1 cut(s) | 569 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 560, 569, 1674 |
| NarI | GGCGCC | 1 cut(s) | 264 |
| NciI | CCSGG | 2 cut(s) | 1448, 1449 |
| NdeI | CATATG | 1 cut(s) | 528 |
| NlaIII | CATG | 4 cut(s) | 39, 406, 980, 997 |
| NlaIV | GGNNCC | 7 cut(s) | 265, 438, 759, 1200, 1237, 1390, 1626 |
| NmeAIII | GCCGAG | 1 cut(s) | 357 |
| NmuCI | GTSAC | 1 cut(s) | 148 |
| PfeI | GAWTC | 3 cut(s) | 1473, 1606, 1640 |
| PflFI | GACNNNGTC | 1 cut(s) | 292 |
| PkrI | GCNGC | 6 cut(s) | 237, 240, 263, 330, 574, 828 |
| PluTI | GGCGCC | 1 cut(s) | 267 |
| PpuMI | RGGWCCY | 1 cut(s) | 758 |
| Psp5II | RGGWCCY | 1 cut(s) | 758 |
| Psp6I | CCWGG | 1 cut(s) | 567 |
| PspEI | GGTNACC | 1 cut(s) | 148 |
| PspGI | CCWGG | 1 cut(s) | 567 |
| PspN4I | GGNNCC | 7 cut(s) | 265, 438, 759, 1200, 1237, 1390, 1626 |
| PspPI | GGNCC | 6 cut(s) | 436, 511, 758, 926, 1178, 1530 |
| PspPPI | RGGWCCY | 1 cut(s) | 758 |
| PsuI | RGATCY | 1 cut(s) | 1300 |
| PsyI | GACNNNGTC | 1 cut(s) | 292 |
| RsaI | GTAC | 3 cut(s) | 157, 533, 813 |
| RsaNI | GTAC | 3 cut(s) | 156, 532, 812 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1525 |
| SaqAI | TTAA | 3 cut(s) | 1103, 1185, 1275 |
| SatI | GCNGC | 6 cut(s) | 236, 239, 262, 329, 573, 827 |
| Sau96I | GGNCC | 6 cut(s) | 436, 511, 758, 926, 1178, 1530 |
| ScrFI | CCNGG | 3 cut(s) | 569, 1448, 1449 |
| SduI | GDGCHC | 1 cut(s) | 1483 |
| SfaNI | GCATC | 5 cut(s) | 584, 946, 1252, 1399, 1509 |
| SfoI | GGCGCC | 1 cut(s) | 265 |
| SinI | GGWCC | 1 cut(s) | 758 |
| SmaI | CCCGGG | 1 cut(s) | 1449 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1525 |
| SmlI | CTYRAG | 2 cut(s) | 59, 171 |
| SmoI | CTYRAG | 2 cut(s) | 59, 171 |
| SpeI | ACTAGT | 1 cut(s) | 1670 |
| SsiI | CCGC | 4 cut(s) | 236, 239, 261, 1425 |
| SspDI | GGCGCC | 1 cut(s) | 263 |
| SspMI | CTAG | 3 cut(s) | 614, 1671, 1678 |
| StyD4I | CCNGG | 3 cut(s) | 567, 1446, 1447 |
| StyI | CCWWGG | 1 cut(s) | 514 |
| TaaI | ACNGT | 2 cut(s) | 886, 1010 |
| TaqI | TCGA | 5 cut(s) | 317, 453, 1351, 1383, 1576 |
| TaqII | GACCGA | 1 cut(s) | 136 |
| TatI | WGTACW | 2 cut(s) | 531, 811 |
| TauI | GCSGC | 3 cut(s) | 238, 241, 264 |
| TfiI | GAWTC | 3 cut(s) | 1473, 1606, 1640 |
| Tru1I | TTAA | 3 cut(s) | 1103, 1185, 1275 |
| Tru9I | TTAA | 3 cut(s) | 1103, 1185, 1275 |
| TscAI | CASTG | 5 cut(s) | 973, 1015, 1093, 1158, 1557 |
| TseFI | GTSAC | 1 cut(s) | 148 |
| TseI | GCWGC | 3 cut(s) | 328, 572, 826 |
| Tsp45I | GTSAC | 1 cut(s) | 148 |
| TspDTI | ATGAA | 6 cut(s) | 335, 409, 965, 1188, 1619, 1632 |
| TspGWI | ACGGA | 1 cut(s) | 1248 |
| TspMI | CCCGGG | 1 cut(s) | 1447 |
| TspRI | CASTG | 5 cut(s) | 973, 1015, 1093, 1158, 1557 |
| Tth111I | GACNNNGTC | 1 cut(s) | 292 |
| VpaK11BI | GGWCC | 1 cut(s) | 758 |
| XapI | RAATTY | 4 cut(s) | 486, 901, 1337, 1589 |
| XmaI | CCCGGG | 1 cut(s) | 1447 |
| XmiI | GTMKAC | 2 cut(s) | 40, 944 |
| XspI | CTAG | 3 cut(s) | 614, 1671, 1678 |