Rh6BG111800

Cytochrome c biogenesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0009612
Physical Location & Seq
Reverse (-)
17483670 .. 17487949
4280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG111800.1

Sequence Viewer

Length: 1473 bp
ATGGAGGCTCTAAACCCCACCATAACCCCCAAACCATGTCTACCCAGAACCTCTTTCCTCAAATCCCATCTCTTCAACTCCACCTTCAAACCCACATTCTGTCCCCACAATTCTCAGTTCTTCAAAAGGACACCTCTCTCACTCTCGGTCACCTGTACGCTGAAGACCCCTCAAGAAAACAAGAACAAGAAAAGCAACAACATAAGCAAGAAGATTATACTCTCCGAAGGAGCGCCGCCGCCGTTGGAGGAGAAGGGTGGCGGCGCCACCGGAGGGGACAAAGCTCCGGCCAAGTCAGGGAGTGGGGTGATGGGTTCGATGAAGAGGCTGCCGAGGAAGGTTTTGTCGGTTTTGTCTTATCTGCCTTTGGCTATTGGAGAAATGTTTGTCATTGCTGGTCTCATGGCTCTCGGAACTTTCATTGATCAAGGTGAGGCCCCAGATCATTATTTCGATAAATACCCTGAAAGTAATCCTATATTGGGAATTTTCACTTGGAGATGGGTTTTGGCCCTTGGGTTTGATCATATGTACTCATCTCCCATTTTCCTTGCAACATTGGCTCTCCTGGCTGCGTCACTAATGGCCTGCACTTACACAACACAGATACCTCTAGTCAAGGTTGCAAGAAGATGGAGTTTCTTGCAGTCTTCTGAGGCCATCCAGAAGCAGGAGTTTTCAGAGGCTTTGCCAAGAGCTTCTGTTCAAGACTTGGGTGTTATTCTTATGGGAGCTGGATATGAGGTATTCTTGAAGGGACCTTCTTTATATGCCTTTAGGGGGTTGGCTGGACGATTTGCCCCTATTGGAGTACATTTAGCAATGCTGCTGATAATGGTAGGTGGAACTCTTAGTGCAACTGGGAGCTTCAAAGGAGCAGTAACAGTTCCACAGGGTTTGAATTTTGTTGTAGGAGATGTTTTAGGCCCATCTGGGTTTCTGTCTACTCCAACCGATGCTTTCAACACTGAGGTTCATGTAAACAAGTTCTACATGACCTATTTTGACAGTGGAGAGGTATCACAATTTTATACTGATCTTTCACTTATGGACTTAGACGGGAAGGAGGTGCTGAGGAAAACAATCAGTGTAAATAACCCTTTAAGGTATGGAGGGATCACCATATACCAGACAGATTGGAGTATTTCAGCACTGCAAGTGACCAAGGATAATGAAGGGCCTTTTAATTTGGCTGTGGCACCTCTTCAGATCAATGGAGACAAGAAGCTTTACGGAACCTTCTTACCTGTTGGAGATGTTGATGGTCCTAATGTTAAGGGAATATCAATGCTTTTGCGAGATCTACAATCAATTGTCCTGTATGATCAAGAAGGGAAATTTGTTGGAGTTCGACGACCAAGTTCCAAGCTTCCGATTGAAATCGATGGCTCCAAAATTACTATTGTAGATGCAATTGGGAGTAGCGGTCTTGCCCTGAAGGTGATGACTAAAAATTTGTTGTACAACCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ResB

Protein Analysis

490

Amino Acids

53.19

Weight (kDa)

9.06

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResB PF05140 123 - 391 4.8e-50 ResB-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 263, 1198
AccI GTMKAC 2 cut(s) 40, 944
AciI CCGC 4 cut(s) 236, 239, 261, 1425
AclWI GGATC 1 cut(s) 1124
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 4 cut(s) 486, 901, 1337, 1453
AcuI CTGAAG 3 cut(s) 182, 1190, 1457
AcyI GRCGYC 1 cut(s) 264
AfaI GTAC 4 cut(s) 157, 533, 813, 1463
AfiI CCNNNNNNNGG 5 cut(s) 273, 297, 482, 670, 780
AgsI TTSAA 9 cut(s) 76, 88, 124, 707, 754, 871, 901, 964, 1379
AjnI CCWGG 1 cut(s) 567
AjuI GAANNNNNNNTTGG 2 cut(s) 478, 510
AluBI AGCT 6 cut(s) 284, 698, 734, 867, 1228, 1369
AluI AGCT 6 cut(s) 284, 698, 734, 867, 1228, 1369
Alw26I GTCTC 2 cut(s) 404, 1212
AlwI GGATC 1 cut(s) 1124
AoxI GGCC 7 cut(s) 288, 435, 510, 585, 657, 925, 1178
ApeKI GCWGC 3 cut(s) 328, 572, 826
ApoI RAATTY 4 cut(s) 486, 901, 1337, 1453
ArsI GACNNNNNNTTYG 2 cut(s) 1438, 1470
AspLEI GCGC 2 cut(s) 235, 266
AspS9I GGNCC 6 cut(s) 436, 511, 758, 926, 1178, 1265
AsuHPI GGTGA 5 cut(s) 142, 319, 443, 1111, 1453
AvaII GGWCC 2 cut(s) 758, 1265
BanI GGYRCC 2 cut(s) 263, 1198
BbsI GAAGAC 2 cut(s) 170, 642
BbvCI CCTCAGC 1 cut(s) 1073
BbvI GCAGC 3 cut(s) 315, 559, 813
BccI CCATC 8 cut(s) 75, 304, 495, 627, 668, 937, 1256, 1379
BceAI ACGGC 1 cut(s) 226
BciT130I CCWGG 1 cut(s) 569
BclI TGATCA 3 cut(s) 424, 523, 1324
BcoDI GTCTC 2 cut(s) 404, 1212
BfaI CTAG 1 cut(s) 614
BfmI CTRYAG 1 cut(s) 1469
BfoI RGCGCY 2 cut(s) 236, 267
BglII AGATCT 1 cut(s) 1300
BisI GCNGC 6 cut(s) 236, 239, 262, 329, 573, 827
BlsI GCNGC 6 cut(s) 237, 240, 263, 330, 574, 828
Bme1390I CCNGG 1 cut(s) 569
Bme18I GGWCC 2 cut(s) 758, 1265
BmgT120I GGNCC 6 cut(s) 436, 511, 758, 926, 1178, 1265
BmiI GGNNCC 6 cut(s) 265, 438, 759, 1200, 1237, 1390
BmrFI CCNGG 1 cut(s) 569
BmrI ACTGGG 1 cut(s) 870
BmsI GCATC 2 cut(s) 946, 1399
BmuI ACTGGG 1 cut(s) 870
BpiI GAAGAC 2 cut(s) 170, 642
Bpu10I CCTNAGC 1 cut(s) 1073
BpuEI CTTGAG 1 cut(s) 156
Bsa29I ATCGAT 1 cut(s) 1383
BsaBI GATNNNNATC 1 cut(s) 1379
BsaHI GRCGYC 1 cut(s) 264
BsaI GGTCTC 1 cut(s) 404
BsaJI CCNNGG 3 cut(s) 332, 514, 1164
BsaWI WCCGGW 1 cut(s) 269
BsaXI ACNNNNNCTCC 2 cut(s) 1411, 1441
Bsc4I CCNNNNNNNGG 5 cut(s) 273, 297, 482, 670, 780
Bse1I ACTGG 1 cut(s) 865
Bse3DI GCAATG 2 cut(s) 390, 828
Bse8I GATNNNNATC 1 cut(s) 1379
BseBI CCWGG 1 cut(s) 569
BseCI ATCGAT 1 cut(s) 1383
BseDI CCNNGG 3 cut(s) 332, 514, 1164
BseGI GGATG 1 cut(s) 660
BseJI GATNNNNATC 1 cut(s) 1379
BseLI CCNNNNNNNGG 5 cut(s) 273, 297, 482, 670, 780
BseMI GCAATG 2 cut(s) 390, 828
BseMII CTCAG 4 cut(s) 128, 645, 960, 1064
BseNI ACTGG 1 cut(s) 865
BseRI GAGGAG 1 cut(s) 263
BseXI GCAGC 3 cut(s) 315, 559, 813
BsgI GTGCAG 1 cut(s) 574
BshFI GGCC 7 cut(s) 290, 437, 512, 587, 659, 927, 1180
BshNI GGYRCC 2 cut(s) 263, 1198
BshVI ATCGAT 1 cut(s) 1383
BsiSI CCGG 2 cut(s) 270, 287
BslFI GGGAC 3 cut(s) 87, 290, 771
BslI CCNNNNNNNGG 5 cut(s) 273, 297, 482, 670, 780
BsmAI GTCTC 2 cut(s) 404, 1212
BsmFI GGGAC 3 cut(s) 87, 290, 771
BsnI GGCC 7 cut(s) 290, 437, 512, 587, 659, 927, 1180
Bso31I GGTCTC 1 cut(s) 404
Bsp1407I TGTACA 1 cut(s) 1461
Bsp143I GATC 8 cut(s) 424, 442, 523, 1036, 1116, 1209, 1300, 1324
BspACI CCGC 4 cut(s) 236, 239, 261, 1425
BspANI GGCC 7 cut(s) 290, 437, 512, 587, 659, 927, 1180
BspCNI CTCAG 4 cut(s) 127, 646, 961, 1065
BspDI ATCGAT 1 cut(s) 1383
BspLI GGNNCC 6 cut(s) 265, 438, 759, 1200, 1237, 1390
BspPI GGATC 1 cut(s) 1124
BspT107I GGYRCC 2 cut(s) 263, 1198
BspTNI GGTCTC 1 cut(s) 404
BsrDI GCAATG 2 cut(s) 390, 828
BsrGI TGTACA 1 cut(s) 1461
BsrI ACTGG 1 cut(s) 865
BssECI CCNNGG 3 cut(s) 332, 514, 1164
BssMI GATC 8 cut(s) 424, 442, 523, 1036, 1116, 1209, 1300, 1324
BssNI GRCGYC 1 cut(s) 264
BssT1I CCWWGG 2 cut(s) 514, 1164
Bst2UI CCWGG 1 cut(s) 569
Bst4CI ACNGT 2 cut(s) 886, 1010
Bst6I CTCTTC 3 cut(s) 77, 317, 1209
BstACI GRCGYC 1 cut(s) 264
BstAUI TGTACA 1 cut(s) 1461
BstC8I GCNNGC 1 cut(s) 589
BstDEI CTNAG 6 cut(s) 114, 654, 851, 969, 1054, 1073
BstEII GGTNACC 1 cut(s) 148
BstF5I GGATG 1 cut(s) 660
BstH2I RGCGCY 2 cut(s) 236, 267
BstHHI GCGC 2 cut(s) 235, 266
BstKTI GATC 8 cut(s) 427, 445, 526, 1039, 1119, 1212, 1303, 1327
BstMAI GTCTC 2 cut(s) 404, 1212
BstMBI GATC 8 cut(s) 424, 442, 523, 1036, 1116, 1209, 1300, 1324
BstMWI GCNNNNNNNGC 2 cut(s) 560, 569
BstNI CCWGG 1 cut(s) 569
BstPI GGTNACC 1 cut(s) 148
BstSCI CCNGG 1 cut(s) 567
BstSFI CTRYAG 1 cut(s) 1469
BstV1I GCAGC 3 cut(s) 315, 559, 813
BstV2I GAAGAC 2 cut(s) 170, 642
BstX2I RGATCY 1 cut(s) 1300
BstYI RGATCY 1 cut(s) 1300
Bsu15I ATCGAT 1 cut(s) 1383
BsuRI GGCC 7 cut(s) 290, 437, 512, 587, 659, 927, 1180
BsuTUI ATCGAT 1 cut(s) 1383
BtsCI GGATG 1 cut(s) 660
BtsI GCAGTG 1 cut(s) 1151
BtsIMutI CAGTG 4 cut(s) 966, 1015, 1093, 1151
Cac8I GCNNGC 1 cut(s) 589
CfoI GCGC 2 cut(s) 235, 266
Cfr13I GGNCC 6 cut(s) 436, 511, 758, 926, 1178, 1265
ClaI ATCGAT 1 cut(s) 1383
CseI GACGC 1 cut(s) 564
Csp6I GTAC 4 cut(s) 156, 532, 812, 1462
CspCI CAANNNNNGTGG 2 cut(s) 879, 914
CviAII CATG 4 cut(s) 36, 403, 977, 994
CviQI GTAC 4 cut(s) 156, 532, 812, 1462
DdeI CTNAG 6 cut(s) 114, 654, 851, 969, 1054, 1073
DinI GGCGCC 1 cut(s) 265
DpnI GATC 8 cut(s) 426, 444, 525, 1038, 1118, 1211, 1302, 1326
DpnII GATC 8 cut(s) 424, 442, 523, 1036, 1116, 1209, 1300, 1324
EaeI YGGCCR 1 cut(s) 288
Eam1104I CTCTTC 3 cut(s) 77, 317, 1209
EarI CTCTTC 3 cut(s) 77, 317, 1209
Eco130I CCWWGG 2 cut(s) 514, 1164
Eco31I GGTCTC 1 cut(s) 404
Eco47I GGWCC 2 cut(s) 758, 1265
Eco57I CTGAAG 3 cut(s) 182, 1190, 1457
Eco91I GGTNACC 1 cut(s) 148
EcoO109I RGGNCCY 3 cut(s) 436, 758, 1178
EcoO65I GGTNACC 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 567
EcoT14I CCWWGG 2 cut(s) 514, 1164
EgeI GGCGCC 1 cut(s) 265
EheI GGCGCC 1 cut(s) 265
ErhI CCWWGG 2 cut(s) 514, 1164
FaeI CATG 4 cut(s) 39, 406, 980, 997
FaqI GGGAC 3 cut(s) 87, 290, 771
FatI CATG 4 cut(s) 35, 402, 976, 993
FauNDI CATATG 1 cut(s) 528
FbaI TGATCA 3 cut(s) 424, 523, 1324
FblI GTMKAC 2 cut(s) 40, 944
Fnu4HI GCNGC 6 cut(s) 236, 239, 262, 329, 573, 827
FokI GGATG 1 cut(s) 647
Fsp4HI GCNGC 6 cut(s) 236, 239, 262, 329, 573, 827
FspBI CTAG 1 cut(s) 614
GlaI GCGC 2 cut(s) 234, 265
GluI GCNGC 6 cut(s) 236, 239, 262, 329, 573, 827
HaeII RGCGCY 2 cut(s) 236, 267
HaeIII GGCC 7 cut(s) 290, 437, 512, 587, 659, 927, 1180
HapII CCGG 2 cut(s) 270, 287
HgaI GACGC 1 cut(s) 564
HhaI GCGC 2 cut(s) 235, 266
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 4 cut(s) 39, 406, 980, 997
Hin6I GCGC 2 cut(s) 233, 264
HinP1I GCGC 2 cut(s) 233, 264
HindIII AAGCTT 2 cut(s) 1226, 1367
HpaII CCGG 2 cut(s) 270, 287
HphI GGTGA 5 cut(s) 142, 319, 443, 1111, 1453
Hpy166II GTNNAC 3 cut(s) 41, 945, 982
Hpy188I TCNGA 6 cut(s) 226, 413, 655, 682, 1209, 1374
Hpy188III TCNNGA 5 cut(s) 173, 664, 707, 751, 1328
Hpy8I GTNNAC 3 cut(s) 41, 945, 982
Hpy99I CGWCG 1 cut(s) 1356
HpyCH4III ACNGT 2 cut(s) 886, 1010
HpyCH4V TGCA 7 cut(s) 554, 591, 626, 646, 857, 1156, 1412
HpyF10VI GCNNNNNNNGC 2 cut(s) 560, 569
HpyF3I CTNAG 6 cut(s) 114, 654, 851, 969, 1054, 1073
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 4 cut(s) 39, 406, 980, 997
HspAI GCGC 2 cut(s) 233, 264
KasI GGCGCC 1 cut(s) 263
Ksp22I TGATCA 3 cut(s) 424, 523, 1324
Kzo9I GATC 8 cut(s) 424, 442, 523, 1036, 1116, 1209, 1300, 1324
LmnI GCTCC 6 cut(s) 230, 289, 731, 864, 875, 1394
Lsp1109I GCAGC 3 cut(s) 315, 559, 813
LweI GCATC 2 cut(s) 946, 1399
MaeI CTAG 1 cut(s) 614
MaeIII GTNAC 4 cut(s) 148, 576, 880, 1159
MalI GATC 8 cut(s) 426, 444, 525, 1038, 1118, 1211, 1302, 1326
MboI GATC 8 cut(s) 424, 442, 523, 1036, 1116, 1209, 1300, 1324
MboII GAAGA 8 cut(s) 64, 112, 175, 223, 334, 642, 642, 1196
MfeI CAATTG 2 cut(s) 1311, 1413
MflI RGATCY 1 cut(s) 1300
Mly113I GGCGCC 1 cut(s) 264
MmeI TCCRAC 4 cut(s) 225, 974, 1231, 1324
MseI TTAA 3 cut(s) 1103, 1185, 1275
MspI CCGG 2 cut(s) 270, 287
MspR9I CCNGG 1 cut(s) 569
MunI CAATTG 2 cut(s) 1311, 1413
MvaI CCWGG 1 cut(s) 569
MwoI GCNNNNNNNGC 2 cut(s) 560, 569
NarI GGCGCC 1 cut(s) 264
NdeI CATATG 1 cut(s) 528
NdeII GATC 8 cut(s) 424, 442, 523, 1036, 1116, 1209, 1300, 1324
NlaIII CATG 4 cut(s) 39, 406, 980, 997
NlaIV GGNNCC 6 cut(s) 265, 438, 759, 1200, 1237, 1390
NmeAIII GCCGAG 1 cut(s) 357
NmuCI GTSAC 3 cut(s) 148, 576, 1159
PkrI GCNGC 6 cut(s) 237, 240, 263, 330, 574, 828
PluTI GGCGCC 1 cut(s) 267
PpuMI RGGWCCY 1 cut(s) 758
Psp5II RGGWCCY 1 cut(s) 758
Psp6I CCWGG 1 cut(s) 567
PspEI GGTNACC 1 cut(s) 148
PspGI CCWGG 1 cut(s) 567
PspN4I GGNNCC 6 cut(s) 265, 438, 759, 1200, 1237, 1390
PspPI GGNCC 6 cut(s) 436, 511, 758, 926, 1178, 1265
PspPPI RGGWCCY 1 cut(s) 758
PsuI RGATCY 1 cut(s) 1300
RsaI GTAC 4 cut(s) 157, 533, 813, 1463
RsaNI GTAC 4 cut(s) 156, 532, 812, 1462
SaqAI TTAA 3 cut(s) 1103, 1185, 1275
SatI GCNGC 6 cut(s) 236, 239, 262, 329, 573, 827
Sau3AI GATC 8 cut(s) 424, 442, 523, 1036, 1116, 1209, 1300, 1324
Sau96I GGNCC 6 cut(s) 436, 511, 758, 926, 1178, 1265
ScrFI CCNGG 1 cut(s) 569
SfaNI GCATC 2 cut(s) 946, 1399
SfcI CTRYAG 1 cut(s) 1469
SfoI GGCGCC 1 cut(s) 265
SinI GGWCC 2 cut(s) 758, 1265
SmlI CTYRAG 1 cut(s) 171
SmoI CTYRAG 1 cut(s) 171
SsiI CCGC 4 cut(s) 236, 239, 261, 1425
SspDI GGCGCC 1 cut(s) 263
SspMI CTAG 1 cut(s) 614
StyD4I CCNGG 1 cut(s) 567
StyI CCWWGG 2 cut(s) 514, 1164
TaaI ACNGT 2 cut(s) 886, 1010
TaqI TCGA 4 cut(s) 317, 453, 1351, 1383
TaqII GACCGA 1 cut(s) 136
TatI WGTACW 3 cut(s) 531, 811, 1461
TauI GCSGC 3 cut(s) 238, 241, 264
Tru1I TTAA 3 cut(s) 1103, 1185, 1275
Tru9I TTAA 3 cut(s) 1103, 1185, 1275
TscAI CASTG 4 cut(s) 973, 1015, 1093, 1158
TseFI GTSAC 3 cut(s) 148, 576, 1159
TseI GCWGC 3 cut(s) 328, 572, 826
Tsp45I GTSAC 3 cut(s) 148, 576, 1159
TspDTI ATGAA 4 cut(s) 335, 409, 965, 1188
TspGWI ACGGA 1 cut(s) 1248
TspRI CASTG 4 cut(s) 973, 1015, 1093, 1158
VpaK11BI GGWCC 2 cut(s) 758, 1265
XapI RAATTY 4 cut(s) 486, 901, 1337, 1453
XmiI GTMKAC 2 cut(s) 40, 944
XspI CTAG 1 cut(s) 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.