Rh6AG117800

Cytochrome c biogenesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0009612
Physical Location & Seq
Reverse (-)
17749836 .. 17754140
4305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG117800.1

Sequence Viewer

Length: 1551 bp
ATGGTGGCTCTAAACCCCTCCATAACCCCCAAACCATGTCTACCCAGAACCTCTTTCCTCAAATCCCATCTCCTCAACTCCACCTTCAAACCCACATTCTCATTCTCTCCCCACAATTCTCAGTTCTTCAAAAGGACCCCTCTCTCATTCTCAGTCACTTGTGCGCTGAAGACCCCTCAAGAAAACAAGAACAGTAAAAGCAAGAATATAAGCAAGAAGATTATACTCTCCGAAGGAGCGCCGCCGCCGTTGGAGGAGAAGGGTGGAGGCGCCACCGGAGGGGACAAAGCTCCGGCCAAGTCAGGGAGTGGGGTGATGGGTTCGATGAAGAGGCTGCCGAGGAAGGTTTTGTCGGTTTTGTCTTATCTGCCTTTGGCTATTGGAGAAATGTTTGTCATTGCTGGTCTCATGGCTCTCGGAACTTTCATTGATCAAGGTGAGGCCCCAGACCATTATTTCGATAAATACCCTGAAAGTAATCCTATATTGGGAATTTTCACTTGGAGATGGGTTTTGGCCCTTGGGTTTGATCATATGTACTCATCTCCCATTTTCCTTGCAACATTGGCTCTCCTGGCTGCATCACTAATGGCCTGCACTTACACAACACAGATACCTCTAGTCAAGGTTGCAAGAAGATGGAGTTTCTTGCAGTCTTCTGAGGCCATCCAGAAGCAGGAGTTTTCAGAGGCTTTGCCAAGAGCTTCTGTTCAAGACTTGGGTGTTATTCTTATGGGAGCTGGATATGAGGTATTCTTGAAGGGACCTTCTTTATATGCCTTTAGGGGGTTGGCTGGACGATTTGCCCCTATTGGAGTACATTTAGCAATGCTGCTGATAATGGTAGGTGGAACTCTTAGTGCAACTGGGAGCTTCAAAGGAGCAGTAACAGTTCCACAGGGTTTGAATTTTGTTGTAGGAGATGTTTTAGGCCCATCTGGGTTTCTCTCTACTCCAACCGATGCTTTCAACACTGAGGTTCATGTAAACAAGTTCTACATGACCTATTTTGACAGTGGAGAGGTATCACAATTTTATACTGATCTTTCACTTATGGACCTAGACGGGAAGGAGGTGCTGAGGAAAACAATCAGTGTAAATAACCCTTTAAGGTATGGAGGGATCACCATATACCAGACAGATTGGAGTATTTCAGCACTGCAAGTGATCAAGGATAATGAAGGGCCTTTTAATTTGGCTGTGGCACCTCTTCAGATCAATGGAGACAAGAAGCTTTACGGAACCTTCTTACCTGTTGGAGATGTTGATGCTCCTAATGTTAAGGGAATATCAATGCTTTTGCGAGATCTACAATCAATTGTCCTGTATGATCAAGAAGGGAAATTTGTTGGAGTTCGACGACCAAGTTCCAAGCTTCCAATTGAAATCGATGGCTCCAAAATTACTATTGTAGATGCAATTGGGAGTAGCGGTCTTGCCCTGAAGACTGACCCGGGAGTGCCAGTTGTATATGCTGGATTCGGTGCTCTAATGCTCACAACTTGCATCAGTTTTCTATCTCATTCACAGGTGAGAATTTACATCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ResB

Protein Analysis

516

Amino Acids

55.79

Weight (kDa)

9.06

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResB PF05140 125 - 385 1.4e-49 ResB-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 269, 1204
AccI GTMKAC 1 cut(s) 40
AciI CCGC 3 cut(s) 242, 245, 1431
AclWI GGATC 1 cut(s) 1130
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 4 cut(s) 492, 907, 1343, 1536
AcuI CTGAAG 3 cut(s) 188, 1196, 1463
AcyI GRCGYC 1 cut(s) 270
AfaI GTAC 2 cut(s) 539, 819
AfiI CCNNNNNNNGG 5 cut(s) 279, 303, 488, 676, 786
AgsI TTSAA 8 cut(s) 88, 130, 713, 760, 877, 907, 970, 1385
AjnI CCWGG 1 cut(s) 573
AjuI GAANNNNNNNTTGG 2 cut(s) 484, 516
AluBI AGCT 6 cut(s) 290, 704, 740, 873, 1234, 1375
AluI AGCT 6 cut(s) 290, 704, 740, 873, 1234, 1375
Alw21I GWGCWC 1 cut(s) 1489
Alw26I GTCTC 2 cut(s) 410, 1218
AlwI GGATC 1 cut(s) 1130
Ama87I CYCGRG 1 cut(s) 1453
AoxI GGCC 7 cut(s) 294, 441, 516, 591, 663, 931, 1184
ApeKI GCWGC 3 cut(s) 334, 578, 832
ApoI RAATTY 4 cut(s) 492, 907, 1343, 1536
ArsI GACNNNNNNTTYG 2 cut(s) 440, 472
AspLEI GCGC 3 cut(s) 166, 241, 272
AspS9I GGNCC 7 cut(s) 135, 442, 517, 764, 932, 1057, 1184
AsuC2I CCSGG 2 cut(s) 1454, 1455
AsuHPI GGTGA 4 cut(s) 325, 449, 1117, 1543
AvaI CYCGRG 1 cut(s) 1453
AvaII GGWCC 3 cut(s) 135, 764, 1057
BanI GGYRCC 2 cut(s) 269, 1204
BbsI GAAGAC 3 cut(s) 176, 648, 1451
Bbv12I GWGCWC 1 cut(s) 1489
BbvCI CCTCAGC 1 cut(s) 1079
BbvI GCAGC 3 cut(s) 321, 565, 819
BccI CCATC 7 cut(s) 75, 310, 501, 633, 674, 943, 1385
BceAI ACGGC 1 cut(s) 232
BciT130I CCWGG 1 cut(s) 575
BclI TGATCA 4 cut(s) 430, 529, 1167, 1330
BcnI CCSGG 2 cut(s) 1454, 1455
BcoDI GTCTC 2 cut(s) 410, 1218
BfaI CTAG 2 cut(s) 620, 1061
BfoI RGCGCY 2 cut(s) 242, 273
BglII AGATCT 1 cut(s) 1306
BisI GCNGC 5 cut(s) 242, 245, 335, 579, 833
BlsI GCNGC 5 cut(s) 243, 246, 336, 580, 834
Bme1390I CCNGG 3 cut(s) 575, 1454, 1455
Bme18I GGWCC 3 cut(s) 135, 764, 1057
BmeT110I CYCGRG 1 cut(s) 1453
BmgT120I GGNCC 7 cut(s) 135, 442, 517, 764, 932, 1057, 1184
BmiI GGNNCC 7 cut(s) 137, 271, 444, 765, 1206, 1243, 1396
BmrFI CCNGG 3 cut(s) 575, 1454, 1455
BmrI ACTGGG 1 cut(s) 876
BmsI GCATC 5 cut(s) 590, 952, 1258, 1405, 1515
BmuI ACTGGG 1 cut(s) 876
BpiI GAAGAC 3 cut(s) 176, 648, 1451
Bpu10I CCTNAGC 1 cut(s) 1079
BpuEI CTTGAG 1 cut(s) 162
BpuMI CCSGG 2 cut(s) 1454, 1455
Bsa29I ATCGAT 1 cut(s) 1389
BsaHI GRCGYC 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 410
BsaJI CCNNGG 3 cut(s) 338, 520, 1453
BsaWI WCCGGW 1 cut(s) 275
BsaXI ACNNNNNCTCC 4 cut(s) 1417, 1447, 1449, 1479
Bsc4I CCNNNNNNNGG 5 cut(s) 279, 303, 488, 676, 786
Bse1I ACTGG 2 cut(s) 871, 1463
Bse3DI GCAATG 2 cut(s) 396, 834
BseBI CCWGG 1 cut(s) 575
BseCI ATCGAT 1 cut(s) 1389
BseDI CCNNGG 3 cut(s) 338, 520, 1453
BseGI GGATG 1 cut(s) 666
BseLI CCNNNNNNNGG 5 cut(s) 279, 303, 488, 676, 786
BseMI GCAATG 2 cut(s) 396, 834
BseMII CTCAG 5 cut(s) 134, 165, 651, 966, 1070
BseNI ACTGG 2 cut(s) 871, 1463
BseRI GAGGAG 2 cut(s) 62, 269
BseXI GCAGC 3 cut(s) 321, 565, 819
BsgI GTGCAG 1 cut(s) 580
BshFI GGCC 7 cut(s) 296, 443, 518, 593, 665, 933, 1186
BshNI GGYRCC 2 cut(s) 269, 1204
BshVI ATCGAT 1 cut(s) 1389
BsiHKAI GWGCWC 1 cut(s) 1489
BsiHKCI CYCGRG 1 cut(s) 1453
BsiSI CCGG 3 cut(s) 276, 293, 1454
BslFI GGGAC 2 cut(s) 296, 777
BslI CCNNNNNNNGG 5 cut(s) 279, 303, 488, 676, 786
BsmAI GTCTC 2 cut(s) 410, 1218
BsmFI GGGAC 2 cut(s) 296, 777
BsnI GGCC 7 cut(s) 296, 443, 518, 593, 665, 933, 1186
Bso31I GGTCTC 1 cut(s) 410
BsoBI CYCGRG 1 cut(s) 1453
Bsp1286I GDGCHC 1 cut(s) 1489
Bsp143I GATC 8 cut(s) 430, 529, 1042, 1122, 1167, 1215, 1306, 1330
BspACI CCGC 3 cut(s) 242, 245, 1431
BspANI GGCC 7 cut(s) 296, 443, 518, 593, 665, 933, 1186
BspCNI CTCAG 5 cut(s) 133, 164, 652, 967, 1071
BspDI ATCGAT 1 cut(s) 1389
BspLI GGNNCC 7 cut(s) 137, 271, 444, 765, 1206, 1243, 1396
BspPI GGATC 1 cut(s) 1130
BspT107I GGYRCC 2 cut(s) 269, 1204
BspTNI GGTCTC 1 cut(s) 410
BsrDI GCAATG 2 cut(s) 396, 834
BsrI ACTGG 2 cut(s) 871, 1463
BssECI CCNNGG 3 cut(s) 338, 520, 1453
BssMI GATC 8 cut(s) 430, 529, 1042, 1122, 1167, 1215, 1306, 1330
BssNI GRCGYC 1 cut(s) 270
BssT1I CCWWGG 1 cut(s) 520
Bst2UI CCWGG 1 cut(s) 575
Bst4CI ACNGT 3 cut(s) 194, 892, 1016
Bst6I CTCTTC 2 cut(s) 323, 1215
BstACI GRCGYC 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 595
BstDEI CTNAG 6 cut(s) 120, 151, 660, 857, 975, 1079
BstF5I GGATG 1 cut(s) 666
BstH2I RGCGCY 2 cut(s) 242, 273
BstHHI GCGC 3 cut(s) 166, 241, 272
BstKTI GATC 8 cut(s) 433, 532, 1045, 1125, 1170, 1218, 1309, 1333
BstMAI GTCTC 2 cut(s) 410, 1218
BstMBI GATC 8 cut(s) 430, 529, 1042, 1122, 1167, 1215, 1306, 1330
BstMWI GCNNNNNNNGC 2 cut(s) 566, 575
BstNI CCWGG 1 cut(s) 575
BstSCI CCNGG 3 cut(s) 573, 1452, 1453
BstV1I GCAGC 3 cut(s) 321, 565, 819
BstV2I GAAGAC 3 cut(s) 176, 648, 1451
BstX2I RGATCY 1 cut(s) 1306
BstYI RGATCY 1 cut(s) 1306
Bsu15I ATCGAT 1 cut(s) 1389
BsuRI GGCC 7 cut(s) 296, 443, 518, 593, 665, 933, 1186
BsuTUI ATCGAT 1 cut(s) 1389
BtsCI GGATG 1 cut(s) 666
BtsI GCAGTG 1 cut(s) 1157
BtsIMutI CAGTG 4 cut(s) 972, 1021, 1099, 1157
Cac8I GCNNGC 1 cut(s) 595
CfoI GCGC 3 cut(s) 166, 241, 272
Cfr13I GGNCC 7 cut(s) 135, 442, 517, 764, 932, 1057, 1184
Cfr9I CCCGGG 1 cut(s) 1453
ClaI ATCGAT 1 cut(s) 1389
Csp6I GTAC 2 cut(s) 538, 818
CspCI CAANNNNNGTGG 2 cut(s) 885, 920
CviAII CATG 4 cut(s) 36, 409, 983, 1000
CviQI GTAC 2 cut(s) 538, 818
DdeI CTNAG 6 cut(s) 120, 151, 660, 857, 975, 1079
DinI GGCGCC 1 cut(s) 271
DpnI GATC 8 cut(s) 432, 531, 1044, 1124, 1169, 1217, 1308, 1332
DpnII GATC 8 cut(s) 430, 529, 1042, 1122, 1167, 1215, 1306, 1330
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 2 cut(s) 323, 1215
EarI CTCTTC 2 cut(s) 323, 1215
Eco130I CCWWGG 1 cut(s) 520
Eco31I GGTCTC 1 cut(s) 410
Eco47I GGWCC 3 cut(s) 135, 764, 1057
Eco57I CTGAAG 3 cut(s) 188, 1196, 1463
Eco88I CYCGRG 1 cut(s) 1453
EcoO109I RGGNCCY 4 cut(s) 135, 442, 764, 1184
EcoRII CCWGG 1 cut(s) 573
EcoT14I CCWWGG 1 cut(s) 520
EgeI GGCGCC 1 cut(s) 271
EheI GGCGCC 1 cut(s) 271
ErhI CCWWGG 1 cut(s) 520
FaeI CATG 4 cut(s) 39, 412, 986, 1003
FaqI GGGAC 2 cut(s) 296, 777
FatI CATG 4 cut(s) 35, 408, 982, 999
FauNDI CATATG 1 cut(s) 534
FbaI TGATCA 4 cut(s) 430, 529, 1167, 1330
FblI GTMKAC 1 cut(s) 40
Fnu4HI GCNGC 5 cut(s) 242, 245, 335, 579, 833
FokI GGATG 1 cut(s) 653
Fsp4HI GCNGC 5 cut(s) 242, 245, 335, 579, 833
FspBI CTAG 2 cut(s) 620, 1061
GlaI GCGC 3 cut(s) 165, 240, 271
GluI GCNGC 5 cut(s) 242, 245, 335, 579, 833
HaeII RGCGCY 2 cut(s) 242, 273
HaeIII GGCC 7 cut(s) 296, 443, 518, 593, 665, 933, 1186
HapII CCGG 3 cut(s) 276, 293, 1454
HhaI GCGC 3 cut(s) 166, 241, 272
Hin1I GRCGYC 1 cut(s) 270
Hin1II CATG 4 cut(s) 39, 412, 986, 1003
Hin6I GCGC 3 cut(s) 164, 239, 270
HinP1I GCGC 3 cut(s) 164, 239, 270
HindIII AAGCTT 2 cut(s) 1232, 1373
HinfI GANTC 1 cut(s) 1479
HpaII CCGG 3 cut(s) 276, 293, 1454
HphI GGTGA 4 cut(s) 325, 449, 1117, 1543
Hpy166II GTNNAC 2 cut(s) 41, 988
Hpy188I TCNGA 5 cut(s) 232, 419, 661, 688, 1215
Hpy188III TCNNGA 5 cut(s) 179, 670, 713, 757, 1334
Hpy8I GTNNAC 2 cut(s) 41, 988
Hpy99I CGWCG 1 cut(s) 1362
HpyCH4III ACNGT 3 cut(s) 194, 892, 1016
HpyCH4V TGCA 9 cut(s) 560, 581, 597, 632, 652, 863, 1162, 1418, 1506
HpyF10VI GCNNNNNNNGC 2 cut(s) 566, 575
HpyF3I CTNAG 6 cut(s) 120, 151, 660, 857, 975, 1079
Hsp92I GRCGYC 1 cut(s) 270
Hsp92II CATG 4 cut(s) 39, 412, 986, 1003
HspAI GCGC 3 cut(s) 164, 239, 270
KasI GGCGCC 1 cut(s) 269
Ksp22I TGATCA 4 cut(s) 430, 529, 1167, 1330
Kzo9I GATC 8 cut(s) 430, 529, 1042, 1122, 1167, 1215, 1306, 1330
LmnI GCTCC 7 cut(s) 236, 295, 737, 870, 881, 1276, 1400
Lsp1109I GCAGC 3 cut(s) 321, 565, 819
LweI GCATC 5 cut(s) 590, 952, 1258, 1405, 1515
MaeI CTAG 2 cut(s) 620, 1061
MaeIII GTNAC 2 cut(s) 154, 886
MalI GATC 8 cut(s) 432, 531, 1044, 1124, 1169, 1217, 1308, 1332
MboI GATC 8 cut(s) 430, 529, 1042, 1122, 1167, 1215, 1306, 1330
MboII GAAGA 8 cut(s) 118, 181, 229, 340, 648, 648, 1202, 1456
MfeI CAATTG 3 cut(s) 1317, 1380, 1419
MflI RGATCY 1 cut(s) 1306
MhlI GDGCHC 1 cut(s) 1489
Mly113I GGCGCC 1 cut(s) 270
MmeI TCCRAC 4 cut(s) 231, 980, 1237, 1330
MseI TTAA 3 cut(s) 1109, 1191, 1281
MspI CCGG 3 cut(s) 276, 293, 1454
MspR9I CCNGG 3 cut(s) 575, 1454, 1455
MunI CAATTG 3 cut(s) 1317, 1380, 1419
MvaI CCWGG 1 cut(s) 575
MwoI GCNNNNNNNGC 2 cut(s) 566, 575
NarI GGCGCC 1 cut(s) 270
NciI CCSGG 2 cut(s) 1454, 1455
NdeI CATATG 1 cut(s) 534
NdeII GATC 8 cut(s) 430, 529, 1042, 1122, 1167, 1215, 1306, 1330
NlaIII CATG 4 cut(s) 39, 412, 986, 1003
NlaIV GGNNCC 7 cut(s) 137, 271, 444, 765, 1206, 1243, 1396
NmeAIII GCCGAG 1 cut(s) 363
NmuCI GTSAC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 1479
PkrI GCNGC 5 cut(s) 243, 246, 336, 580, 834
PluTI GGCGCC 1 cut(s) 273
PpuMI RGGWCCY 2 cut(s) 135, 764
Psp5II RGGWCCY 2 cut(s) 135, 764
Psp6I CCWGG 1 cut(s) 573
PspGI CCWGG 1 cut(s) 573
PspN4I GGNNCC 7 cut(s) 137, 271, 444, 765, 1206, 1243, 1396
PspPI GGNCC 7 cut(s) 135, 442, 517, 764, 932, 1057, 1184
PspPPI RGGWCCY 2 cut(s) 135, 764
PsuI RGATCY 1 cut(s) 1306
RsaI GTAC 2 cut(s) 539, 819
RsaNI GTAC 2 cut(s) 538, 818
SaqAI TTAA 3 cut(s) 1109, 1191, 1281
SatI GCNGC 5 cut(s) 242, 245, 335, 579, 833
Sau3AI GATC 8 cut(s) 430, 529, 1042, 1122, 1167, 1215, 1306, 1330
Sau96I GGNCC 7 cut(s) 135, 442, 517, 764, 932, 1057, 1184
ScrFI CCNGG 3 cut(s) 575, 1454, 1455
SduI GDGCHC 1 cut(s) 1489
SfaNI GCATC 5 cut(s) 590, 952, 1258, 1405, 1515
SfoI GGCGCC 1 cut(s) 271
SinI GGWCC 3 cut(s) 135, 764, 1057
SmaI CCCGGG 1 cut(s) 1455
SmlI CTYRAG 1 cut(s) 177
SmoI CTYRAG 1 cut(s) 177
SsiI CCGC 3 cut(s) 242, 245, 1431
SspDI GGCGCC 1 cut(s) 269
SspMI CTAG 2 cut(s) 620, 1061
StyD4I CCNGG 3 cut(s) 573, 1452, 1453
StyI CCWWGG 1 cut(s) 520
TaaI ACNGT 3 cut(s) 194, 892, 1016
TaqI TCGA 4 cut(s) 323, 459, 1357, 1389
TatI WGTACW 2 cut(s) 537, 817
TauI GCSGC 2 cut(s) 244, 247
TfiI GAWTC 1 cut(s) 1479
Tru1I TTAA 3 cut(s) 1109, 1191, 1281
Tru9I TTAA 3 cut(s) 1109, 1191, 1281
TscAI CASTG 4 cut(s) 979, 1021, 1099, 1164
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 3 cut(s) 334, 578, 832
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 4 cut(s) 341, 415, 971, 1194
TspGWI ACGGA 1 cut(s) 1254
TspMI CCCGGG 1 cut(s) 1453
TspRI CASTG 4 cut(s) 979, 1021, 1099, 1164
VpaK11BI GGWCC 3 cut(s) 135, 764, 1057
XapI RAATTY 4 cut(s) 492, 907, 1343, 1536
XmaI CCCGGG 1 cut(s) 1453
XmiI GTMKAC 1 cut(s) 40
XspI CTAG 2 cut(s) 620, 1061
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.