RLG00000014431

Cytochrome c biogenesis protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
53056807 .. 53060528
3722 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014431

Sequence Viewer

Length: 1680 bp
ATGGAGGCTCTAAAACCCTCCATAACCCCCAAACCATGTCTACCCAGAACCTCTTTCCTCAACTCCCATCTCCTCAACTCCACCTTCAAACCCACATTCTCTCCCCACAATTCTCAGTTCTTCAAAAGGACACCTCTCTCATTCTCGGTCACCTGTACGCTGAAGACCCCTCAAGAAAACAAGAACAAGAAAAGCAACAATATAAGCAAGAAGATTATACTCTCCGAAGGAGCGCCGCCGCCGTTGGAGGAGAAGGGTGGCGGCGCCACCGGAGGCGACAAAGCTCCGGCCAAGTCAGGGAGTGGGGTGATGGGTTCGATGAAGAGGCTGCCGAGGAAGGTTTTGTCGGTTTTGTCTTATCTGCCTTTGGCTATTGGCGAAATGTTTGTCATTGCTGGTCTCATGGCTCTCGGAACTTTCATTGATCAAGGTGAGGCCCCAGATCATTATTTCGATAAATACCCTGAAAGTAATCCTATATTGGGAATTTTCACTTGGAGATGGGTTTTGGCCCTTGGGTTTGATCATATGTACTCATCTCCCATTTTCCTTGCAACATTGGCTCTCCTGGCTGCATCACTAATGGCCTGCACTTACACAACACAGATACCTCTAGTCAAGGTTGCAAGAAGATGGAGTTTCTTGCAGTCTTCTGAGGCCATCCAGAAGCAGGAGTTTTCAGAGTCTTTGCCAAGAGCTTCTGTTCAAGACTTGGGTGTTATTCTTATGGGAGCTGGATATGAGGTATTCTTGAAGGGACCTTCTTTATATGCCTTTAGGGGGTTGGCTGGACGATTTGCCCCTATTGGAGTACATTTAGCAATGCTGCTGATAATGGTAGGTGGAACTCTTAGTGCAACTGGGAGCTTCAAAGGAGCAGTTACAGTTCCACAGGGTTTGAATTTTGTTGTAGGAGATGTTTTAGGCCCATCTGGGTTTCTGTCTACTCCAACCGATGCTTTCAACACTGAGGTTCATGTAAACAAGTTCTACATGACCTATTTTGACAGTGGAGAGGTATCGCAATTTTATACTGATCTTTCACTTATGGACCTAGACGGGAAGGAGGTGCTGAGGAAAACAATCAGTGTAAATAACCCTTTAAGGTATGGAGGGATCACCATATACCAGACAGATTGGAGTATTTCAGCACTGCAAGTGATCAAGGATAATGAAGGGCCTTTTAATTTGGCTGTGGCGCCTCTTCAGATCAATGGAGACAAGAAGCTTTACGGAACCTTCTTACCTGTTGGAGATGTTGATGCTCCTAATGTTAAGGGAATATCAATGCTTTTGCGAGATCTACAATCAATTGTCCTGTATGATCAAGAAGGGAAATTTGTTGGAGTTCGACGACCAAGTTCCAAGCTTCCAATTGAAATCGATGGCTCCAAAATTACTATTGTAGATGCAATTGGTAGTAGCGGTCTTGCCCTGAAGACTGACCCGGGAGTGCCAGTTGTATATGCTGGATTCGGTGCTCTAATGCTCACAACTTGCATCAGTTTTCTATCTCATTCACAGATATGGGCCTTACAAGATGGAACAGCAGTGGTCGTAGGAGGAAAAACTAACCGAGCAAAGGGTGAATTTCCAGAAGAGATGAATCGCTTGCTTGATCGGGTTCCTGAATTGATTGATTCATCTCTTTCCAAGCAATCTGATAGCACTAGTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

560

Amino Acids

60.39

Weight (kDa)

8.6

Isoelectric Point (pI)

44.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResB PF05140 123 - 383 1.6e-49 ResB-like family
ResB PF05140 446 - 535 5.7e-10 ResB-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 263, 1198
AccI GTMKAC 2 cut(s) 40, 944
AciI CCGC 4 cut(s) 236, 239, 261, 1425
AclWI GGATC 1 cut(s) 1124
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 4 cut(s) 486, 901, 1337, 1589
AcuI CTGAAG 3 cut(s) 182, 1190, 1457
AcyI GRCGYC 2 cut(s) 264, 1199
AfaI GTAC 3 cut(s) 157, 533, 813
AfiI CCNNNNNNNGG 5 cut(s) 297, 482, 670, 780, 1582
AgsI TTSAA 8 cut(s) 88, 124, 707, 754, 871, 901, 964, 1379
AhlI ACTAGT 1 cut(s) 1670
AjnI CCWGG 1 cut(s) 567
AjuI GAANNNNNNNTTGG 2 cut(s) 478, 510
AluBI AGCT 6 cut(s) 284, 698, 734, 867, 1228, 1369
AluI AGCT 6 cut(s) 284, 698, 734, 867, 1228, 1369
Alw21I GWGCWC 1 cut(s) 1483
Alw26I GTCTC 2 cut(s) 404, 1212
AlwI GGATC 1 cut(s) 1124
Ama87I CYCGRG 1 cut(s) 1447
AoxI GGCC 8 cut(s) 288, 435, 510, 585, 657, 925, 1178, 1530
ApeKI GCWGC 3 cut(s) 328, 572, 826
ApoI RAATTY 4 cut(s) 486, 901, 1337, 1589
ArsI GACNNNNNNTTYG 2 cut(s) 372, 404
AspLEI GCGC 3 cut(s) 235, 266, 1201
AspS9I GGNCC 7 cut(s) 436, 511, 758, 926, 1051, 1178, 1530
AsuC2I CCSGG 2 cut(s) 1448, 1449
AsuHPI GGTGA 5 cut(s) 142, 319, 443, 1111, 1598
AvaI CYCGRG 1 cut(s) 1447
AvaII GGWCC 2 cut(s) 758, 1051
BanI GGYRCC 2 cut(s) 263, 1198
BbsI GAAGAC 3 cut(s) 170, 642, 1445
Bbv12I GWGCWC 1 cut(s) 1483
BbvCI CCTCAGC 1 cut(s) 1073
BbvI GCAGC 3 cut(s) 315, 559, 813
BccI CCATC 8 cut(s) 75, 304, 495, 627, 668, 937, 1379, 1535
BceAI ACGGC 1 cut(s) 226
BciT130I CCWGG 1 cut(s) 569
BclI TGATCA 4 cut(s) 424, 523, 1161, 1324
BcnI CCSGG 2 cut(s) 1448, 1449
BcoDI GTCTC 2 cut(s) 404, 1212
BcuI ACTAGT 1 cut(s) 1670
BfaI CTAG 4 cut(s) 614, 1055, 1671, 1678
BfoI RGCGCY 3 cut(s) 236, 267, 1202
BglII AGATCT 1 cut(s) 1300
BisI GCNGC 6 cut(s) 236, 239, 262, 329, 573, 827
BlsI GCNGC 6 cut(s) 237, 240, 263, 330, 574, 828
Bme1390I CCNGG 3 cut(s) 569, 1448, 1449
Bme18I GGWCC 2 cut(s) 758, 1051
BmeT110I CYCGRG 1 cut(s) 1447
BmgT120I GGNCC 7 cut(s) 436, 511, 758, 926, 1051, 1178, 1530
BmiI GGNNCC 7 cut(s) 265, 438, 759, 1200, 1237, 1390, 1626
BmrFI CCNGG 3 cut(s) 569, 1448, 1449
BmrI ACTGGG 1 cut(s) 870
BmsI GCATC 5 cut(s) 584, 946, 1252, 1399, 1509
BmuI ACTGGG 1 cut(s) 870
BpiI GAAGAC 3 cut(s) 170, 642, 1445
Bpu10I CCTNAGC 1 cut(s) 1073
BpuEI CTTGAG 1 cut(s) 156
BpuMI CCSGG 2 cut(s) 1448, 1449
Bsa29I ATCGAT 1 cut(s) 1383
BsaHI GRCGYC 2 cut(s) 264, 1199
BsaI GGTCTC 1 cut(s) 404
BsaJI CCNNGG 3 cut(s) 332, 514, 1447
BsaWI WCCGGW 1 cut(s) 269
BsaXI ACNNNNNCTCC 4 cut(s) 85, 115, 1443, 1473
Bsc4I CCNNNNNNNGG 5 cut(s) 297, 482, 670, 780, 1582
Bse1I ACTGG 2 cut(s) 865, 1457
Bse3DI GCAATG 2 cut(s) 390, 828
BseBI CCWGG 1 cut(s) 569
BseCI ATCGAT 1 cut(s) 1383
BseDI CCNNGG 3 cut(s) 332, 514, 1447
BseGI GGATG 1 cut(s) 660
BseLI CCNNNNNNNGG 5 cut(s) 297, 482, 670, 780, 1582
BseMI GCAATG 2 cut(s) 390, 828
BseMII CTCAG 4 cut(s) 128, 645, 960, 1064
BseNI ACTGG 2 cut(s) 865, 1457
BseRI GAGGAG 2 cut(s) 62, 263
BseXI GCAGC 3 cut(s) 315, 559, 813
BsgI GTGCAG 1 cut(s) 574
BshFI GGCC 8 cut(s) 290, 437, 512, 587, 659, 927, 1180, 1532
BshNI GGYRCC 2 cut(s) 263, 1198
BshVI ATCGAT 1 cut(s) 1383
BsiHKAI GWGCWC 1 cut(s) 1483
BsiHKCI CYCGRG 1 cut(s) 1447
BsiSI CCGG 3 cut(s) 270, 287, 1448
BslFI GGGAC 1 cut(s) 771
BslI CCNNNNNNNGG 5 cut(s) 297, 482, 670, 780, 1582
BsmAI GTCTC 2 cut(s) 404, 1212
BsmFI GGGAC 1 cut(s) 771
BsnI GGCC 8 cut(s) 290, 437, 512, 587, 659, 927, 1180, 1532
Bso31I GGTCTC 1 cut(s) 404
BsoBI CYCGRG 1 cut(s) 1447
Bsp1286I GDGCHC 1 cut(s) 1483
BspACI CCGC 4 cut(s) 236, 239, 261, 1425
BspANI GGCC 8 cut(s) 290, 437, 512, 587, 659, 927, 1180, 1532
BspCNI CTCAG 4 cut(s) 127, 646, 961, 1065
BspDI ATCGAT 1 cut(s) 1383
BspLI GGNNCC 7 cut(s) 265, 438, 759, 1200, 1237, 1390, 1626
BspPI GGATC 1 cut(s) 1124
BspT107I GGYRCC 2 cut(s) 263, 1198
BspTNI GGTCTC 1 cut(s) 404
BsrDI GCAATG 2 cut(s) 390, 828
BsrI ACTGG 2 cut(s) 865, 1457
BssECI CCNNGG 3 cut(s) 332, 514, 1447
BssNI GRCGYC 2 cut(s) 264, 1199
BssT1I CCWWGG 1 cut(s) 514
Bst2UI CCWGG 1 cut(s) 569
Bst4CI ACNGT 2 cut(s) 886, 1010
Bst6I CTCTTC 3 cut(s) 317, 1209, 1593
BstACI GRCGYC 2 cut(s) 264, 1199
BstC8I GCNNGC 2 cut(s) 589, 1613
BstDEI CTNAG 5 cut(s) 114, 654, 851, 969, 1073
BstEII GGTNACC 1 cut(s) 148
BstF5I GGATG 1 cut(s) 660
BstH2I RGCGCY 3 cut(s) 236, 267, 1202
BstHHI GCGC 3 cut(s) 235, 266, 1201
BstMAI GTCTC 2 cut(s) 404, 1212
BstMWI GCNNNNNNNGC 3 cut(s) 560, 569, 1674
BstNI CCWGG 1 cut(s) 569
BstPI GGTNACC 1 cut(s) 148
BstSCI CCNGG 3 cut(s) 567, 1446, 1447
BstV1I GCAGC 3 cut(s) 315, 559, 813
BstV2I GAAGAC 3 cut(s) 170, 642, 1445
BstX2I RGATCY 1 cut(s) 1300
BstYI RGATCY 1 cut(s) 1300
Bsu15I ATCGAT 1 cut(s) 1383
BsuRI GGCC 8 cut(s) 290, 437, 512, 587, 659, 927, 1180, 1532
BsuTUI ATCGAT 1 cut(s) 1383
BtsCI GGATG 1 cut(s) 660
BtsI GCAGTG 2 cut(s) 1151, 1557
BtsIMutI CAGTG 5 cut(s) 966, 1015, 1093, 1151, 1557
Cac8I GCNNGC 2 cut(s) 589, 1613
CfoI GCGC 3 cut(s) 235, 266, 1201
Cfr13I GGNCC 7 cut(s) 436, 511, 758, 926, 1051, 1178, 1530
Cfr9I CCCGGG 1 cut(s) 1447
ClaI ATCGAT 1 cut(s) 1383
Csp6I GTAC 3 cut(s) 156, 532, 812
CspCI CAANNNNNGTGG 2 cut(s) 879, 914
CviAII CATG 4 cut(s) 36, 403, 977, 994
CviQI GTAC 3 cut(s) 156, 532, 812
DdeI CTNAG 5 cut(s) 114, 654, 851, 969, 1073
DinI GGCGCC 2 cut(s) 265, 1200
EaeI YGGCCR 1 cut(s) 288
Eam1104I CTCTTC 3 cut(s) 317, 1209, 1593
EarI CTCTTC 3 cut(s) 317, 1209, 1593
Eco130I CCWWGG 1 cut(s) 514
Eco31I GGTCTC 1 cut(s) 404
Eco47I GGWCC 2 cut(s) 758, 1051
Eco57I CTGAAG 3 cut(s) 182, 1190, 1457
Eco88I CYCGRG 1 cut(s) 1447
Eco91I GGTNACC 1 cut(s) 148
EcoO109I RGGNCCY 3 cut(s) 436, 758, 1178
EcoO65I GGTNACC 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 567
EcoT14I CCWWGG 1 cut(s) 514
EgeI GGCGCC 2 cut(s) 265, 1200
EheI GGCGCC 2 cut(s) 265, 1200
ErhI CCWWGG 1 cut(s) 514
FaeI CATG 4 cut(s) 39, 406, 980, 997
FaqI GGGAC 1 cut(s) 771
FatI CATG 4 cut(s) 35, 402, 976, 993
FauNDI CATATG 1 cut(s) 528
FbaI TGATCA 4 cut(s) 424, 523, 1161, 1324
FblI GTMKAC 2 cut(s) 40, 944
Fnu4HI GCNGC 6 cut(s) 236, 239, 262, 329, 573, 827
FokI GGATG 1 cut(s) 647
Fsp4HI GCNGC 6 cut(s) 236, 239, 262, 329, 573, 827
FspBI CTAG 4 cut(s) 614, 1055, 1671, 1678
GlaI GCGC 3 cut(s) 234, 265, 1200
GluI GCNGC 6 cut(s) 236, 239, 262, 329, 573, 827
HaeII RGCGCY 3 cut(s) 236, 267, 1202
HaeIII GGCC 8 cut(s) 290, 437, 512, 587, 659, 927, 1180, 1532
HapII CCGG 3 cut(s) 270, 287, 1448
HhaI GCGC 3 cut(s) 235, 266, 1201
Hin1I GRCGYC 2 cut(s) 264, 1199
Hin1II CATG 4 cut(s) 39, 406, 980, 997
Hin6I GCGC 3 cut(s) 233, 264, 1199
HinP1I GCGC 3 cut(s) 233, 264, 1199
HindIII AAGCTT 2 cut(s) 1226, 1367
HinfI GANTC 4 cut(s) 683, 1473, 1606, 1640
HpaII CCGG 3 cut(s) 270, 287, 1448
HphI GGTGA 5 cut(s) 142, 319, 443, 1111, 1598
Hpy166II GTNNAC 3 cut(s) 41, 945, 982
Hpy188I TCNGA 6 cut(s) 226, 413, 655, 682, 1209, 1663
Hpy188III TCNNGA 7 cut(s) 173, 664, 707, 751, 1328, 1595, 1628
Hpy8I GTNNAC 3 cut(s) 41, 945, 982
Hpy99I CGWCG 1 cut(s) 1356
HpyCH4III ACNGT 2 cut(s) 886, 1010
HpyCH4V TGCA 9 cut(s) 554, 575, 591, 626, 646, 857, 1156, 1412, 1500
HpyF10VI GCNNNNNNNGC 3 cut(s) 560, 569, 1674
HpyF3I CTNAG 5 cut(s) 114, 654, 851, 969, 1073
Hsp92I GRCGYC 2 cut(s) 264, 1199
Hsp92II CATG 4 cut(s) 39, 406, 980, 997
HspAI GCGC 3 cut(s) 233, 264, 1199
KasI GGCGCC 2 cut(s) 263, 1198
Ksp22I TGATCA 4 cut(s) 424, 523, 1161, 1324
LmnI GCTCC 7 cut(s) 230, 289, 731, 864, 875, 1270, 1394
Lsp1109I GCAGC 3 cut(s) 315, 559, 813
LweI GCATC 5 cut(s) 584, 946, 1252, 1399, 1509
MaeI CTAG 4 cut(s) 614, 1055, 1671, 1678
MaeIII GTNAC 2 cut(s) 148, 880
MboII GAAGA 9 cut(s) 112, 175, 223, 334, 642, 642, 1196, 1450, 1610
MfeI CAATTG 3 cut(s) 1311, 1374, 1413
MflI RGATCY 1 cut(s) 1300
MhlI GDGCHC 1 cut(s) 1483
Mly113I GGCGCC 2 cut(s) 264, 1199
MlyI GAGTC 1 cut(s) 692
MmeI TCCRAC 4 cut(s) 225, 974, 1231, 1324
MseI TTAA 3 cut(s) 1103, 1185, 1275
MslI CAYNNNNRTG 1 cut(s) 1525
MspI CCGG 3 cut(s) 270, 287, 1448
MspR9I CCNGG 3 cut(s) 569, 1448, 1449
MunI CAATTG 3 cut(s) 1311, 1374, 1413
MvaI CCWGG 1 cut(s) 569
MwoI GCNNNNNNNGC 3 cut(s) 560, 569, 1674
NarI GGCGCC 2 cut(s) 264, 1199
NciI CCSGG 2 cut(s) 1448, 1449
NdeI CATATG 1 cut(s) 528
NlaIII CATG 4 cut(s) 39, 406, 980, 997
NlaIV GGNNCC 7 cut(s) 265, 438, 759, 1200, 1237, 1390, 1626
NmeAIII GCCGAG 1 cut(s) 357
NmuCI GTSAC 1 cut(s) 148
PfeI GAWTC 3 cut(s) 1473, 1606, 1640
PkrI GCNGC 6 cut(s) 237, 240, 263, 330, 574, 828
PleI GAGTC 1 cut(s) 691
PluTI GGCGCC 2 cut(s) 267, 1202
PpsI GAGTC 1 cut(s) 691
PpuMI RGGWCCY 1 cut(s) 758
Psp5II RGGWCCY 1 cut(s) 758
Psp6I CCWGG 1 cut(s) 567
PspEI GGTNACC 1 cut(s) 148
PspGI CCWGG 1 cut(s) 567
PspN4I GGNNCC 7 cut(s) 265, 438, 759, 1200, 1237, 1390, 1626
PspPI GGNCC 7 cut(s) 436, 511, 758, 926, 1051, 1178, 1530
PspPPI RGGWCCY 1 cut(s) 758
PsuI RGATCY 1 cut(s) 1300
RsaI GTAC 3 cut(s) 157, 533, 813
RsaNI GTAC 3 cut(s) 156, 532, 812
RseI CAYNNNNRTG 1 cut(s) 1525
SaqAI TTAA 3 cut(s) 1103, 1185, 1275
SatI GCNGC 6 cut(s) 236, 239, 262, 329, 573, 827
Sau96I GGNCC 7 cut(s) 436, 511, 758, 926, 1051, 1178, 1530
SchI GAGTC 1 cut(s) 692
ScrFI CCNGG 3 cut(s) 569, 1448, 1449
SduI GDGCHC 1 cut(s) 1483
SfaNI GCATC 5 cut(s) 584, 946, 1252, 1399, 1509
SfoI GGCGCC 2 cut(s) 265, 1200
SinI GGWCC 2 cut(s) 758, 1051
SmaI CCCGGG 1 cut(s) 1449
SmiMI CAYNNNNRTG 1 cut(s) 1525
SmlI CTYRAG 1 cut(s) 171
SmoI CTYRAG 1 cut(s) 171
SpeI ACTAGT 1 cut(s) 1670
SsiI CCGC 4 cut(s) 236, 239, 261, 1425
SspDI GGCGCC 2 cut(s) 263, 1198
SspMI CTAG 4 cut(s) 614, 1055, 1671, 1678
StyD4I CCNGG 3 cut(s) 567, 1446, 1447
StyI CCWWGG 1 cut(s) 514
TaaI ACNGT 2 cut(s) 886, 1010
TaqI TCGA 4 cut(s) 317, 453, 1351, 1383
TaqII GACCGA 1 cut(s) 136
TatI WGTACW 2 cut(s) 531, 811
TauI GCSGC 3 cut(s) 238, 241, 264
TfiI GAWTC 3 cut(s) 1473, 1606, 1640
Tru1I TTAA 3 cut(s) 1103, 1185, 1275
Tru9I TTAA 3 cut(s) 1103, 1185, 1275
TscAI CASTG 5 cut(s) 973, 1015, 1093, 1158, 1557
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 3 cut(s) 328, 572, 826
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 6 cut(s) 335, 409, 965, 1188, 1619, 1632
TspGWI ACGGA 1 cut(s) 1248
TspMI CCCGGG 1 cut(s) 1447
TspRI CASTG 5 cut(s) 973, 1015, 1093, 1158, 1557
VpaK11BI GGWCC 2 cut(s) 758, 1051
XapI RAATTY 4 cut(s) 486, 901, 1337, 1589
XmaI CCCGGG 1 cut(s) 1447
XmiI GTMKAC 2 cut(s) 40, 944
XspI CTAG 4 cut(s) 614, 1055, 1671, 1678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.