Rroxscaffold_177G00434470

Cytochrome c biogenesis protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000177
Physical Location & Seq
Forward (+)
497489 .. 511855
14367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_177G00434470.1

Sequence Viewer

Length: 1674 bp
ATGATAATCGACGGTCGATCGAATTTATACGATGATCCAACGGTCGGATCCTCACGGATCGCCCTTTGGATCATCCTCCTAAAATTATCACGAAGATCCAACGTCATACGATCAACATATAAAAATTTCAAGTCCATCCAACGTGGCCGGAAATGGCCGCCGGAGTTAGTGGCAGAGCCGCCGCCGACCACCGCCAATAGTGTCGGGGTCGGGCTGCTCTGCTTCGTCTCATCAAGCCTAATGACTTTCCTAACTAGCATCTCCTATTTCGACGTAAAACTGCAACTTCGAGGCCTCGATCCCTTCGGAAAGTTTCGGGTGCAACCGGAACGATTTAGTTCGGAGTTTGCTGTAATCCCACTACATTTGGCTGAAGATTATTCAGTCATAAGAAGCTTCGAGATACTTACAAGCATTTTGCAAAATGACATGAGAGACATATTCTTTGTCCATTTCATAGAGTCATCAAGAATATTTATGTTCTTCAGCAAAAGGACGTGGCTGTTCTTTTCCTTTTTCTATGCATACTCTTTACCTGAGTTTCTTTCCACCGTAATTTTGCTTACATTATGCCTTATGTGGATTTGGGAGTTTTCTTTTAACGTACGCATTAATTGGGGAAAACAGATGGAGTTTTTGCAGTCTTCTGAGGCCATCCAGAAGCAGGAGTTTTCAGAGTCTTTGCCAAGAGCTTCTGTTCAGGACGTGGGTGTTATTCTTATGGGAGCTGGATATGAGGTATTCTTGAAGGGACCTTCTTTATATGCCTTTAGGGGGTTGGCTGGACGATTTGCCCCTATTGGAGTACATTTAGCAATGCTGCTGATAATGGTAGGTGGAACTCTTAGTGCAACTGGGAGCTTCAAAGGAGCAGTTACAGTTCCACAGGGTTTGAATTTTGTTGTAGGAGATGTTTTAGGCCCATCTGGGTTTCTGTCTACTCCAACCGATGCTTTCAACACTGAGGTTCATGTAAACAAGTTCTACATGACCTATTTTGACAGTGGAGAGGTATCACAATTTTATACTGATCTTTCACTTATGGACCTAGACGGGAAGGAGGTGCTGAGGAAAACAATCAGTGTAAATAACCCTTTAAGGTATGGAGGGATCACCATATACCAGACAGATTGGAGTATTTCAGCACTGCAAGTGATCAAGGATAATGAAGGGCCTTTTAATTTGGCTGTGGCGCCTCTTCAGATCAATGGAGACAAGAAGCTTTACGGAACCTTCTTACCTGTTGGAGATGTTGATGCTCCTAATGTTAAGGGAATATCAATGCTTTTGCGAGATCTACAATCAATTGTCCTGTATGATCAAGAAGGGAAATTTGTTGGAGTTCGACGACCAAGTTCCAAGCTTCCAATTGAAATCGATGGCTCCAAAATTACTATTGTAGATGCAATTGGGAGTAGCGGTCTTGCCCTGAAGACTGACCCGGGAGTGCCGGTTGTATATGCTGGATTCGGTGCTCTAATGCTCACAACTTGCATCAGTTTTCTATCTCATTCACAGATATGGGCCTTACAAGATGGAACAGCAGTGGTCGTAGGAGGAAAAACTAACCGAGCAAAGGGTGAATTTCCAGAAGAGATGAATCGCTTGCTTGATCGGGTTCCTGAATTGATTGATTCATCTCTTTCCAACCAATCTGATAGCACTAGTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

557

Amino Acids

61.79

Weight (kDa)

6.06

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResB PF05140 209 - 381 1.2e-29 ResB-like family
ResB PF05140 444 - 533 5.7e-10 ResB-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1192
AccI GTMKAC 1 cut(s) 938
AciI CCGC 5 cut(s) 158, 179, 182, 192, 1419
AclWI GGATC 8 cut(s) 29, 42, 55, 65, 77, 90, 293, 1118
AcoI YGGCCR 2 cut(s) 145, 155
AcsI RAATTY 5 cut(s) 22, 124, 895, 1331, 1583
AcuI CTGAAG 4 cut(s) 393, 469, 1184, 1451
AcyI GRCGYC 1 cut(s) 1193
AfaI GTAC 2 cut(s) 606, 807
AfiI CCNNNNNNNGG 4 cut(s) 44, 664, 774, 1576
AgsI TTSAA 6 cut(s) 130, 748, 865, 895, 958, 1373
AhlI ACTAGT 1 cut(s) 1664
AjiI CACGTC 2 cut(s) 498, 706
AluBI AGCT 6 cut(s) 396, 692, 728, 861, 1222, 1363
AluI AGCT 6 cut(s) 396, 692, 728, 861, 1222, 1363
Alw21I GWGCWC 1 cut(s) 1477
Alw26I GTCTC 3 cut(s) 232, 429, 1206
AlwI GGATC 8 cut(s) 29, 42, 55, 65, 77, 90, 293, 1118
Ama87I CYCGRG 1 cut(s) 1441
AoxI GGCC 7 cut(s) 145, 155, 292, 651, 919, 1172, 1524
ApeKI GCWGC 2 cut(s) 214, 820
ApoI RAATTY 5 cut(s) 22, 124, 895, 1331, 1583
ArsI GACNNNNNNTTYG 2 cut(s) 428, 460
AseI ATTAAT 1 cut(s) 612
AspLEI GCGC 1 cut(s) 1195
AspS9I GGNCC 5 cut(s) 752, 920, 1045, 1172, 1524
AsuC2I CCSGG 2 cut(s) 1442, 1443
AsuHPI GGTGA 2 cut(s) 1105, 1592
AvaI CYCGRG 1 cut(s) 1441
AvaII GGWCC 2 cut(s) 752, 1045
BamHI GGATCC 1 cut(s) 47
BanI GGYRCC 1 cut(s) 1192
BbsI GAAGAC 2 cut(s) 636, 1439
Bbv12I GWGCWC 1 cut(s) 1477
BbvCI CCTCAGC 1 cut(s) 1067
BbvI GCAGC 2 cut(s) 201, 807
BccI CCATC 6 cut(s) 143, 622, 662, 931, 1373, 1529
BclI TGATCA 2 cut(s) 1155, 1318
BcnI CCSGG 2 cut(s) 1442, 1443
BcoDI GTCTC 3 cut(s) 232, 429, 1206
BcuI ACTAGT 1 cut(s) 1664
BfaI CTAG 4 cut(s) 255, 1049, 1665, 1672
BfoI RGCGCY 1 cut(s) 1196
BglII AGATCT 1 cut(s) 1294
BisI GCNGC 5 cut(s) 158, 179, 182, 215, 821
BlsI GCNGC 5 cut(s) 159, 180, 183, 216, 822
Bme1390I CCNGG 2 cut(s) 1442, 1443
Bme18I GGWCC 2 cut(s) 752, 1045
BmeT110I CYCGRG 1 cut(s) 1441
BmgBI CACGTC 2 cut(s) 498, 706
BmgT120I GGNCC 5 cut(s) 752, 920, 1045, 1172, 1524
BmiI GGNNCC 6 cut(s) 49, 753, 1194, 1231, 1384, 1620
BmrFI CCNGG 2 cut(s) 1442, 1443
BmrI ACTGGG 1 cut(s) 864
BmsI GCATC 5 cut(s) 267, 940, 1246, 1393, 1503
BmuI ACTGGG 1 cut(s) 864
BpiI GAAGAC 2 cut(s) 636, 1439
Bpu10I CCTNAGC 1 cut(s) 1067
BpuMI CCSGG 2 cut(s) 1442, 1443
Bsa29I ATCGAT 1 cut(s) 1377
BsaHI GRCGYC 1 cut(s) 1193
BsaJI CCNNGG 1 cut(s) 1441
BsaWI WCCGGW 1 cut(s) 325
BsaXI ACNNNNNCTCC 4 cut(s) 1405, 1435, 1437, 1467
Bsc4I CCNNNNNNNGG 4 cut(s) 44, 664, 774, 1576
Bse118I RCCGGY 1 cut(s) 1450
Bse1I ACTGG 1 cut(s) 859
Bse3DI GCAATG 1 cut(s) 822
BseCI ATCGAT 1 cut(s) 1377
BseDI CCNNGG 1 cut(s) 1441
BseGI GGATG 3 cut(s) 72, 135, 654
BseLI CCNNNNNNNGG 4 cut(s) 44, 664, 774, 1576
BseMI GCAATG 1 cut(s) 822
BseMII CTCAG 4 cut(s) 528, 639, 954, 1058
BseNI ACTGG 1 cut(s) 859
BseXI GCAGC 2 cut(s) 201, 807
Bsh1285I CGRYCG 3 cut(s) 16, 20, 45
BshFI GGCC 7 cut(s) 147, 157, 294, 653, 921, 1174, 1526
BshNI GGYRCC 1 cut(s) 1192
BshVI ATCGAT 1 cut(s) 1377
BsiEI CGRYCG 3 cut(s) 16, 20, 45
BsiHKAI GWGCWC 1 cut(s) 1477
BsiHKCI CYCGRG 1 cut(s) 1441
BsiSI CCGG 5 cut(s) 148, 161, 326, 1442, 1451
BsiWI CGTACG 1 cut(s) 604
BslFI GGGAC 1 cut(s) 765
BslI CCNNNNNNNGG 4 cut(s) 44, 664, 774, 1576
BsmAI GTCTC 3 cut(s) 232, 429, 1206
BsmBI CGTCTC 1 cut(s) 232
BsmFI GGGAC 1 cut(s) 765
BsnI GGCC 7 cut(s) 147, 157, 294, 653, 921, 1174, 1526
BsoBI CYCGRG 1 cut(s) 1441
Bsp1286I GDGCHC 1 cut(s) 1477
BspACI CCGC 5 cut(s) 158, 179, 182, 192, 1419
BspANI GGCC 7 cut(s) 147, 157, 294, 653, 921, 1174, 1526
BspCNI CTCAG 4 cut(s) 529, 640, 955, 1059
BspDI ATCGAT 1 cut(s) 1377
BspLI GGNNCC 6 cut(s) 49, 753, 1194, 1231, 1384, 1620
BspPI GGATC 8 cut(s) 29, 42, 55, 65, 77, 90, 293, 1118
BspT107I GGYRCC 1 cut(s) 1192
BsrDI GCAATG 1 cut(s) 822
BsrFI RCCGGY 1 cut(s) 1450
BsrI ACTGG 1 cut(s) 859
BssAI RCCGGY 1 cut(s) 1450
BssECI CCNNGG 1 cut(s) 1441
BssNI GRCGYC 1 cut(s) 1193
Bst4CI ACNGT 5 cut(s) 14, 43, 553, 880, 1004
Bst6I CTCTTC 2 cut(s) 1203, 1587
BstACI GRCGYC 1 cut(s) 1193
BstC8I GCNNGC 1 cut(s) 1607
BstDEI CTNAG 5 cut(s) 537, 648, 845, 963, 1067
BstF5I GGATG 3 cut(s) 72, 135, 654
BstH2I RGCGCY 1 cut(s) 1196
BstHHI GCGC 1 cut(s) 1195
BstMAI GTCTC 3 cut(s) 232, 429, 1206
BstMCI CGRYCG 3 cut(s) 16, 20, 45
BstMWI GCNNNNNNNGC 1 cut(s) 1668
BstSCI CCNGG 2 cut(s) 1440, 1441
BstV1I GCAGC 2 cut(s) 201, 807
BstV2I GAAGAC 2 cut(s) 636, 1439
BstX2I RGATCY 3 cut(s) 47, 95, 1294
BstYI RGATCY 3 cut(s) 47, 95, 1294
Bsu15I ATCGAT 1 cut(s) 1377
BsuRI GGCC 7 cut(s) 147, 157, 294, 653, 921, 1174, 1526
BsuTUI ATCGAT 1 cut(s) 1377
BtrI CACGTC 2 cut(s) 498, 706
BtsCI GGATG 3 cut(s) 72, 135, 654
BtsI GCAGTG 2 cut(s) 1145, 1551
BtsIMutI CAGTG 5 cut(s) 960, 1009, 1087, 1145, 1551
Cac8I GCNNGC 1 cut(s) 1607
CfoI GCGC 1 cut(s) 1195
Cfr10I RCCGGY 1 cut(s) 1450
Cfr13I GGNCC 5 cut(s) 752, 920, 1045, 1172, 1524
Cfr9I CCCGGG 1 cut(s) 1441
ClaI ATCGAT 1 cut(s) 1377
Csp6I GTAC 2 cut(s) 605, 806
CspCI CAANNNNNGTGG 4 cut(s) 348, 383, 873, 908
CviAII CATG 3 cut(s) 430, 971, 988
CviQI GTAC 2 cut(s) 605, 806
DdeI CTNAG 5 cut(s) 537, 648, 845, 963, 1067
DinI GGCGCC 1 cut(s) 1194
EaeI YGGCCR 2 cut(s) 145, 155
Eam1104I CTCTTC 2 cut(s) 1203, 1587
EarI CTCTTC 2 cut(s) 1203, 1587
Eco147I AGGCCT 1 cut(s) 294
Eco47I GGWCC 2 cut(s) 752, 1045
Eco57I CTGAAG 4 cut(s) 393, 469, 1184, 1451
Eco88I CYCGRG 1 cut(s) 1441
EcoO109I RGGNCCY 2 cut(s) 752, 1172
EcoT22I ATGCAT 1 cut(s) 526
EgeI GGCGCC 1 cut(s) 1194
EheI GGCGCC 1 cut(s) 1194
Esp3I CGTCTC 1 cut(s) 232
FaeI CATG 3 cut(s) 433, 974, 991
FaqI GGGAC 1 cut(s) 765
FatI CATG 3 cut(s) 429, 970, 987
FbaI TGATCA 2 cut(s) 1155, 1318
FblI GTMKAC 1 cut(s) 938
Fnu4HI GCNGC 5 cut(s) 158, 179, 182, 215, 821
FokI GGATG 3 cut(s) 59, 122, 641
Fsp4HI GCNGC 5 cut(s) 158, 179, 182, 215, 821
FspBI CTAG 4 cut(s) 255, 1049, 1665, 1672
GlaI GCGC 1 cut(s) 1194
GluI GCNGC 5 cut(s) 158, 179, 182, 215, 821
HaeII RGCGCY 1 cut(s) 1196
HaeIII GGCC 7 cut(s) 147, 157, 294, 653, 921, 1174, 1526
HapII CCGG 5 cut(s) 148, 161, 326, 1442, 1451
HhaI GCGC 1 cut(s) 1195
Hin1I GRCGYC 1 cut(s) 1193
Hin1II CATG 3 cut(s) 433, 974, 991
Hin6I GCGC 1 cut(s) 1193
HinP1I GCGC 1 cut(s) 1193
HindIII AAGCTT 3 cut(s) 394, 1220, 1361
HinfI GANTC 5 cut(s) 461, 677, 1467, 1600, 1634
HpaII CCGG 5 cut(s) 148, 161, 326, 1442, 1451
HphI GGTGA 2 cut(s) 1105, 1592
Hpy166II GTNNAC 2 cut(s) 939, 976
Hpy188I TCNGA 7 cut(s) 47, 308, 343, 649, 676, 1203, 1657
Hpy188III TCNNGA 9 cut(s) 90, 400, 468, 658, 701, 745, 1322, 1589, 1622
Hpy8I GTNNAC 2 cut(s) 939, 976
Hpy99I CGWCG 3 cut(s) 14, 275, 1350
HpyAV CCTTC 7 cut(s) 313, 742, 765, 1051, 1163, 1243, 1319
HpyCH4III ACNGT 5 cut(s) 14, 43, 553, 880, 1004
HpyCH4IV ACGT 6 cut(s) 102, 142, 273, 497, 603, 705
HpyCH4V TGCA 9 cut(s) 283, 322, 421, 524, 640, 851, 1150, 1406, 1494
HpyF10VI GCNNNNNNNGC 1 cut(s) 1668
HpyF3I CTNAG 5 cut(s) 537, 648, 845, 963, 1067
HpySE526I ACGT 6 cut(s) 102, 142, 273, 497, 603, 705
Hsp92I GRCGYC 1 cut(s) 1193
Hsp92II CATG 3 cut(s) 433, 974, 991
HspAI GCGC 1 cut(s) 1193
KasI GGCGCC 1 cut(s) 1192
Ksp22I TGATCA 2 cut(s) 1155, 1318
LmnI GCTCC 5 cut(s) 725, 858, 869, 1264, 1388
Lsp1109I GCAGC 2 cut(s) 201, 807
LweI GCATC 5 cut(s) 267, 940, 1246, 1393, 1503
MaeI CTAG 4 cut(s) 255, 1049, 1665, 1672
MaeII ACGT 6 cut(s) 102, 142, 273, 497, 603, 705
MaeIII GTNAC 1 cut(s) 874
MboII GAAGA 7 cut(s) 105, 386, 475, 636, 1190, 1444, 1604
MfeI CAATTG 3 cut(s) 1305, 1368, 1407
MflI RGATCY 3 cut(s) 47, 95, 1294
MhlI GDGCHC 1 cut(s) 1477
Mly113I GGCGCC 1 cut(s) 1193
MlyI GAGTC 2 cut(s) 470, 686
MmeI TCCRAC 8 cut(s) 25, 62, 123, 163, 968, 1225, 1318, 1671
Mph1103I ATGCAT 1 cut(s) 526
MseI TTAA 5 cut(s) 600, 612, 1097, 1179, 1269
MslI CAYNNNNRTG 1 cut(s) 1519
MspI CCGG 5 cut(s) 148, 161, 326, 1442, 1451
MspR9I CCNGG 2 cut(s) 1442, 1443
MunI CAATTG 3 cut(s) 1305, 1368, 1407
MwoI GCNNNNNNNGC 1 cut(s) 1668
NarI GGCGCC 1 cut(s) 1193
NciI CCSGG 2 cut(s) 1442, 1443
NlaIII CATG 3 cut(s) 433, 974, 991
NlaIV GGNNCC 6 cut(s) 49, 753, 1194, 1231, 1384, 1620
NsiI ATGCAT 1 cut(s) 526
PceI AGGCCT 1 cut(s) 294
PfeI GAWTC 3 cut(s) 1467, 1600, 1634
Pfl23II CGTACG 1 cut(s) 604
PkrI GCNGC 5 cut(s) 159, 180, 183, 216, 822
Ple19I CGATCG 1 cut(s) 20
PleI GAGTC 2 cut(s) 469, 685
PluTI GGCGCC 1 cut(s) 1196
PpsI GAGTC 2 cut(s) 469, 685
PpuMI RGGWCCY 1 cut(s) 752
PshBI ATTAAT 1 cut(s) 612
Psp5II RGGWCCY 1 cut(s) 752
PspLI CGTACG 1 cut(s) 604
PspN4I GGNNCC 6 cut(s) 49, 753, 1194, 1231, 1384, 1620
PspPI GGNCC 5 cut(s) 752, 920, 1045, 1172, 1524
PspPPI RGGWCCY 1 cut(s) 752
PsuI RGATCY 3 cut(s) 47, 95, 1294
PvuI CGATCG 1 cut(s) 20
RsaI GTAC 2 cut(s) 606, 807
RsaNI GTAC 2 cut(s) 605, 806
RseI CAYNNNNRTG 1 cut(s) 1519
SaqAI TTAA 5 cut(s) 600, 612, 1097, 1179, 1269
SatI GCNGC 5 cut(s) 158, 179, 182, 215, 821
Sau96I GGNCC 5 cut(s) 752, 920, 1045, 1172, 1524
SchI GAGTC 2 cut(s) 470, 686
ScrFI CCNGG 2 cut(s) 1442, 1443
SduI GDGCHC 1 cut(s) 1477
SfaNI GCATC 5 cut(s) 267, 940, 1246, 1393, 1503
SfoI GGCGCC 1 cut(s) 1194
SinI GGWCC 2 cut(s) 752, 1045
SmaI CCCGGG 1 cut(s) 1443
SmiMI CAYNNNNRTG 1 cut(s) 1519
SpeI ACTAGT 1 cut(s) 1664
SseBI AGGCCT 1 cut(s) 294
SsiI CCGC 5 cut(s) 158, 179, 182, 192, 1419
SspDI GGCGCC 1 cut(s) 1192
SspI AATATT 1 cut(s) 474
SspMI CTAG 4 cut(s) 255, 1049, 1665, 1672
StuI AGGCCT 1 cut(s) 294
StyD4I CCNGG 2 cut(s) 1440, 1441
TaaI ACNGT 5 cut(s) 14, 43, 553, 880, 1004
TaiI ACGT 6 cut(s) 105, 145, 276, 500, 606, 708
TaqI TCGA 9 cut(s) 9, 16, 20, 270, 289, 297, 399, 1345, 1377
TatI WGTACW 1 cut(s) 805
TauI GCSGC 3 cut(s) 160, 181, 184
TfiI GAWTC 3 cut(s) 1467, 1600, 1634
Tru1I TTAA 5 cut(s) 600, 612, 1097, 1179, 1269
Tru9I TTAA 5 cut(s) 600, 612, 1097, 1179, 1269
TscAI CASTG 5 cut(s) 967, 1009, 1087, 1152, 1551
TseI GCWGC 2 cut(s) 214, 820
TspDTI ATGAA 5 cut(s) 445, 959, 1182, 1613, 1626
TspGWI ACGGA 2 cut(s) 70, 1242
TspMI CCCGGG 1 cut(s) 1441
TspRI CASTG 5 cut(s) 967, 1009, 1087, 1152, 1551
VpaK11BI GGWCC 2 cut(s) 752, 1045
VspI ATTAAT 1 cut(s) 612
XapI RAATTY 5 cut(s) 22, 124, 895, 1331, 1583
XmaI CCCGGG 1 cut(s) 1441
XmiI GTMKAC 1 cut(s) 938
XspI CTAG 4 cut(s) 255, 1049, 1665, 1672
Zsp2I ATGCAT 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.