Rroxscaffold_7G00205300

Cytochrome c biogenesis protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
54861101 .. 54865247
4147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00205300.1

Sequence Viewer

Length: 1662 bp
ATGGAGGCTCTAAACCCCTCCATAACCCCCAAACCATGTCTACCCAGAACCTCTTTCCTCAAATCCCATCTCCTCAACTCCACCTTCAAACCAACATTCTCTCCCCACAATTCTCAGTTCTTCAAAAGGACACCCCTCTCATTCTCAGTCACCTGTACGCTGAAGACCCCTCAAGAAAACAAGAACAAGAAAAGCAACAACATAAGCAAGAAGATTATACTCTCCGAAGGAGCGCCGCCGCCGTTGGAGGAGAAGGGTAGCGGCGCCACCGGAGGCGACAAAGCTCCGGCCAAGTCAGGGAGTGGGGTGATGGGTTCGATGAAGAGGCTGCCGAGGAAGGTTTTGTCGGTTTTGTCTTATCTGCCTTTGGCTATTGGAGAAATGTTTGTCATTGCTGGTCTCATGGCTCTCGGAACTTTCATTGATCAAGGTGAGGCCCCAGATCATTATGTCGATAAATACCCTGAAAGTAATCCTATATTGGGAATTTTCACTTGGAGATGGGTTTTGGCCCTTGGGTTTGATCATATGTACTCATCTCCCATTTTCCTTGCAACATTGGCTCTCCTGGCTGCATCACTAATGGCCTGCACTTACACAACACAGATACCTCTAATGGAGTTTTTGCAGTCTTCTGAGGCCATCCAGAAGCAGGAGTTTTCAGAGTCTTTGCCAAGAGCTTCTGTTCAGGACGTGGGTGTTATTCTTATGGGAGCTGGATATGAGGTATTCTTGAAGGGACCTTCTTTATATGCCTTTAGGGGGTTGGCTGGACGATTTGCCCCTATTGGAGTACATTTAGCAATGCTGCTGATAATGGTAGGTGGAACTCTTAGTGCAACTGGGAGCTTCAAAGGAGCAGTTACAGTTCCACAGGGTTTGAATTTTGTTGTAGGAGATGTTTTAGGCCCATCTGGGTTTCTGTCTACTCCAACCGATGCTTTCAACACTGAGGTTCATGTAAACAAGTTCTACATGACCTATTTTGACAGTGGAGAGGTATCACAATTTTATACTGATCTTTCACTTATGGACCTAGACGGGAAGGAGGTGCTGAGGAAAACAATCAGTGTAAATAACCCTTTAAGGTATGGAGGGATCACCATATACCAGACAGATTGGAGTATTTCAGCACTGCAAGTGATCAAGGATAATGAAGGGCCTTTTAATTTGGCTGTGGCGCCTCTTCAGATCAATGGAGACAAGAAGCTTTACGGAACCTTCTTACCTGTTGGAGATGTTGATGCTCCTAATGTTAAGGGAATATCAATGCTTTTGCGAGATCTACAATCAATTGTCCTGTATGATCAAGAAGGGAAATTTGTTGGAGTTCGACGACCAAGTTCCAAGCTTCCAATTGAAATCGATGGCTCCAAAATTACTATTGTAGATGCAATTGGGAGTAGCGGTCTTGCCCTGAAGACTGACCCGGGAGTGCCGGTTGTATATGCTGGATTCGGTGCTCTAATGCTCACAACTTGCATCAGTTTTCTATCTCATTCACAGATATGGGCCTTACAAGATGGAACAGCAGTGGTCGTAGGAGGAAAAACTAACCGAGCAAAGGGTGAATTTCCAGAAGAGATGAATCGCTTGCTTGATCGGGTTCCTGAATTGATTGATTCATCTCTTTCCAACCAATCTGATAGCACTAGTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

553

Amino Acids

59.62

Weight (kDa)

6.68

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResB PF05140 123 - 377 4.4e-48 ResB-like family
ResB PF05140 440 - 529 5.6e-10 ResB-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 263, 1180
AccI GTMKAC 2 cut(s) 40, 926
AciI CCGC 4 cut(s) 236, 239, 261, 1407
AclWI GGATC 1 cut(s) 1106
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 4 cut(s) 486, 883, 1319, 1571
AcuI CTGAAG 3 cut(s) 182, 1172, 1439
AcyI GRCGYC 2 cut(s) 264, 1181
AfaI GTAC 3 cut(s) 157, 533, 795
AfiI CCNNNNNNNGG 5 cut(s) 297, 482, 652, 762, 1564
AgsI TTSAA 7 cut(s) 88, 124, 736, 853, 883, 946, 1361
AhlI ACTAGT 1 cut(s) 1652
AjiI CACGTC 1 cut(s) 694
AjnI CCWGG 1 cut(s) 567
AjuI GAANNNNNNNTTGG 2 cut(s) 478, 510
AluBI AGCT 6 cut(s) 284, 680, 716, 849, 1210, 1351
AluI AGCT 6 cut(s) 284, 680, 716, 849, 1210, 1351
Alw21I GWGCWC 1 cut(s) 1465
Alw26I GTCTC 2 cut(s) 404, 1194
AlwI GGATC 1 cut(s) 1106
Ama87I CYCGRG 1 cut(s) 1429
AoxI GGCC 8 cut(s) 288, 435, 510, 585, 639, 907, 1160, 1512
ApeKI GCWGC 3 cut(s) 328, 572, 808
ApoI RAATTY 4 cut(s) 486, 883, 1319, 1571
AspLEI GCGC 3 cut(s) 235, 266, 1183
AspS9I GGNCC 7 cut(s) 436, 511, 740, 908, 1033, 1160, 1512
AsuC2I CCSGG 2 cut(s) 1430, 1431
AsuHPI GGTGA 5 cut(s) 142, 319, 443, 1093, 1580
AvaI CYCGRG 1 cut(s) 1429
AvaII GGWCC 2 cut(s) 740, 1033
BanI GGYRCC 2 cut(s) 263, 1180
BbsI GAAGAC 3 cut(s) 170, 624, 1427
Bbv12I GWGCWC 1 cut(s) 1465
BbvCI CCTCAGC 1 cut(s) 1055
BbvI GCAGC 3 cut(s) 315, 559, 795
BccI CCATC 7 cut(s) 75, 304, 495, 650, 919, 1361, 1517
BceAI ACGGC 1 cut(s) 226
BciT130I CCWGG 1 cut(s) 569
BclI TGATCA 4 cut(s) 424, 523, 1143, 1306
BcnI CCSGG 2 cut(s) 1430, 1431
BcoDI GTCTC 2 cut(s) 404, 1194
BcuI ACTAGT 1 cut(s) 1652
BfaI CTAG 3 cut(s) 1037, 1653, 1660
BfoI RGCGCY 3 cut(s) 236, 267, 1184
BglII AGATCT 1 cut(s) 1282
BisI GCNGC 6 cut(s) 236, 239, 262, 329, 573, 809
BlsI GCNGC 6 cut(s) 237, 240, 263, 330, 574, 810
Bme1390I CCNGG 3 cut(s) 569, 1430, 1431
Bme18I GGWCC 2 cut(s) 740, 1033
BmeT110I CYCGRG 1 cut(s) 1429
BmgBI CACGTC 1 cut(s) 694
BmgT120I GGNCC 7 cut(s) 436, 511, 740, 908, 1033, 1160, 1512
BmiI GGNNCC 7 cut(s) 265, 438, 741, 1182, 1219, 1372, 1608
BmrFI CCNGG 3 cut(s) 569, 1430, 1431
BmrI ACTGGG 1 cut(s) 852
BmsI GCATC 5 cut(s) 584, 928, 1234, 1381, 1491
BmuI ACTGGG 1 cut(s) 852
BpiI GAAGAC 3 cut(s) 170, 624, 1427
Bpu10I CCTNAGC 1 cut(s) 1055
BpuEI CTTGAG 1 cut(s) 156
BpuMI CCSGG 2 cut(s) 1430, 1431
Bsa29I ATCGAT 1 cut(s) 1365
BsaHI GRCGYC 2 cut(s) 264, 1181
BsaI GGTCTC 1 cut(s) 404
BsaJI CCNNGG 3 cut(s) 332, 514, 1429
BsaWI WCCGGW 1 cut(s) 269
BsaXI ACNNNNNCTCC 6 cut(s) 85, 115, 1393, 1423, 1425, 1455
Bsc4I CCNNNNNNNGG 5 cut(s) 297, 482, 652, 762, 1564
Bse118I RCCGGY 1 cut(s) 1438
Bse1I ACTGG 1 cut(s) 847
Bse3DI GCAATG 2 cut(s) 390, 810
BseBI CCWGG 1 cut(s) 569
BseCI ATCGAT 1 cut(s) 1365
BseDI CCNNGG 3 cut(s) 332, 514, 1429
BseGI GGATG 1 cut(s) 642
BseLI CCNNNNNNNGG 5 cut(s) 297, 482, 652, 762, 1564
BseMI GCAATG 2 cut(s) 390, 810
BseMII CTCAG 5 cut(s) 128, 159, 627, 942, 1046
BseNI ACTGG 1 cut(s) 847
BseRI GAGGAG 2 cut(s) 62, 263
BseXI GCAGC 3 cut(s) 315, 559, 795
BsgI GTGCAG 1 cut(s) 574
BshFI GGCC 8 cut(s) 290, 437, 512, 587, 641, 909, 1162, 1514
BshNI GGYRCC 2 cut(s) 263, 1180
BshVI ATCGAT 1 cut(s) 1365
BsiHKAI GWGCWC 1 cut(s) 1465
BsiHKCI CYCGRG 1 cut(s) 1429
BsiSI CCGG 4 cut(s) 270, 287, 1430, 1439
BslFI GGGAC 1 cut(s) 753
BslI CCNNNNNNNGG 5 cut(s) 297, 482, 652, 762, 1564
BsmAI GTCTC 2 cut(s) 404, 1194
BsmFI GGGAC 1 cut(s) 753
BsnI GGCC 8 cut(s) 290, 437, 512, 587, 641, 909, 1162, 1514
Bso31I GGTCTC 1 cut(s) 404
BsoBI CYCGRG 1 cut(s) 1429
Bsp1286I GDGCHC 1 cut(s) 1465
BspACI CCGC 4 cut(s) 236, 239, 261, 1407
BspANI GGCC 8 cut(s) 290, 437, 512, 587, 641, 909, 1162, 1514
BspCNI CTCAG 5 cut(s) 127, 158, 628, 943, 1047
BspDI ATCGAT 1 cut(s) 1365
BspLI GGNNCC 7 cut(s) 265, 438, 741, 1182, 1219, 1372, 1608
BspPI GGATC 1 cut(s) 1106
BspT107I GGYRCC 2 cut(s) 263, 1180
BspTNI GGTCTC 1 cut(s) 404
BsrDI GCAATG 2 cut(s) 390, 810
BsrFI RCCGGY 1 cut(s) 1438
BsrI ACTGG 1 cut(s) 847
BssAI RCCGGY 1 cut(s) 1438
BssECI CCNNGG 3 cut(s) 332, 514, 1429
BssNI GRCGYC 2 cut(s) 264, 1181
BssT1I CCWWGG 1 cut(s) 514
Bst2UI CCWGG 1 cut(s) 569
Bst4CI ACNGT 2 cut(s) 868, 992
Bst6I CTCTTC 3 cut(s) 317, 1191, 1575
BstACI GRCGYC 2 cut(s) 264, 1181
BstC8I GCNNGC 2 cut(s) 589, 1595
BstDEI CTNAG 6 cut(s) 114, 145, 636, 833, 951, 1055
BstF5I GGATG 1 cut(s) 642
BstH2I RGCGCY 3 cut(s) 236, 267, 1184
BstHHI GCGC 3 cut(s) 235, 266, 1183
BstMAI GTCTC 2 cut(s) 404, 1194
BstMWI GCNNNNNNNGC 3 cut(s) 560, 569, 1656
BstNI CCWGG 1 cut(s) 569
BstSCI CCNGG 3 cut(s) 567, 1428, 1429
BstV1I GCAGC 3 cut(s) 315, 559, 795
BstV2I GAAGAC 3 cut(s) 170, 624, 1427
BstX2I RGATCY 1 cut(s) 1282
BstYI RGATCY 1 cut(s) 1282
Bsu15I ATCGAT 1 cut(s) 1365
BsuRI GGCC 8 cut(s) 290, 437, 512, 587, 641, 909, 1162, 1514
BsuTUI ATCGAT 1 cut(s) 1365
BtrI CACGTC 1 cut(s) 694
BtsCI GGATG 1 cut(s) 642
BtsI GCAGTG 2 cut(s) 1133, 1539
BtsIMutI CAGTG 5 cut(s) 948, 997, 1075, 1133, 1539
Cac8I GCNNGC 2 cut(s) 589, 1595
CfoI GCGC 3 cut(s) 235, 266, 1183
Cfr10I RCCGGY 1 cut(s) 1438
Cfr13I GGNCC 7 cut(s) 436, 511, 740, 908, 1033, 1160, 1512
Cfr9I CCCGGG 1 cut(s) 1429
ClaI ATCGAT 1 cut(s) 1365
Csp6I GTAC 3 cut(s) 156, 532, 794
CspCI CAANNNNNGTGG 2 cut(s) 861, 896
CviAII CATG 4 cut(s) 36, 403, 959, 976
CviQI GTAC 3 cut(s) 156, 532, 794
DdeI CTNAG 6 cut(s) 114, 145, 636, 833, 951, 1055
DinI GGCGCC 2 cut(s) 265, 1182
EaeI YGGCCR 1 cut(s) 288
Eam1104I CTCTTC 3 cut(s) 317, 1191, 1575
EarI CTCTTC 3 cut(s) 317, 1191, 1575
Eco130I CCWWGG 1 cut(s) 514
Eco31I GGTCTC 1 cut(s) 404
Eco47I GGWCC 2 cut(s) 740, 1033
Eco57I CTGAAG 3 cut(s) 182, 1172, 1439
Eco88I CYCGRG 1 cut(s) 1429
EcoO109I RGGNCCY 3 cut(s) 436, 740, 1160
EcoRII CCWGG 1 cut(s) 567
EcoT14I CCWWGG 1 cut(s) 514
EgeI GGCGCC 2 cut(s) 265, 1182
EheI GGCGCC 2 cut(s) 265, 1182
ErhI CCWWGG 1 cut(s) 514
FaeI CATG 4 cut(s) 39, 406, 962, 979
FaqI GGGAC 1 cut(s) 753
FatI CATG 4 cut(s) 35, 402, 958, 975
FauNDI CATATG 1 cut(s) 528
FbaI TGATCA 4 cut(s) 424, 523, 1143, 1306
FblI GTMKAC 2 cut(s) 40, 926
Fnu4HI GCNGC 6 cut(s) 236, 239, 262, 329, 573, 809
FokI GGATG 1 cut(s) 629
Fsp4HI GCNGC 6 cut(s) 236, 239, 262, 329, 573, 809
FspBI CTAG 3 cut(s) 1037, 1653, 1660
GlaI GCGC 3 cut(s) 234, 265, 1182
GluI GCNGC 6 cut(s) 236, 239, 262, 329, 573, 809
HaeII RGCGCY 3 cut(s) 236, 267, 1184
HaeIII GGCC 8 cut(s) 290, 437, 512, 587, 641, 909, 1162, 1514
HapII CCGG 4 cut(s) 270, 287, 1430, 1439
HhaI GCGC 3 cut(s) 235, 266, 1183
Hin1I GRCGYC 2 cut(s) 264, 1181
Hin1II CATG 4 cut(s) 39, 406, 962, 979
Hin6I GCGC 3 cut(s) 233, 264, 1181
HinP1I GCGC 3 cut(s) 233, 264, 1181
HindIII AAGCTT 2 cut(s) 1208, 1349
HinfI GANTC 4 cut(s) 665, 1455, 1588, 1622
HpaII CCGG 4 cut(s) 270, 287, 1430, 1439
HphI GGTGA 5 cut(s) 142, 319, 443, 1093, 1580
Hpy166II GTNNAC 3 cut(s) 41, 927, 964
Hpy188I TCNGA 6 cut(s) 226, 413, 637, 664, 1191, 1645
Hpy188III TCNNGA 7 cut(s) 173, 646, 689, 733, 1310, 1577, 1610
Hpy8I GTNNAC 3 cut(s) 41, 927, 964
Hpy99I CGWCG 1 cut(s) 1338
HpyCH4III ACNGT 2 cut(s) 868, 992
HpyCH4IV ACGT 1 cut(s) 693
HpyCH4V TGCA 8 cut(s) 554, 575, 591, 628, 839, 1138, 1394, 1482
HpyF10VI GCNNNNNNNGC 3 cut(s) 560, 569, 1656
HpyF3I CTNAG 6 cut(s) 114, 145, 636, 833, 951, 1055
HpySE526I ACGT 1 cut(s) 693
Hsp92I GRCGYC 2 cut(s) 264, 1181
Hsp92II CATG 4 cut(s) 39, 406, 962, 979
HspAI GCGC 3 cut(s) 233, 264, 1181
KasI GGCGCC 2 cut(s) 263, 1180
Ksp22I TGATCA 4 cut(s) 424, 523, 1143, 1306
LmnI GCTCC 7 cut(s) 230, 289, 713, 846, 857, 1252, 1376
Lsp1109I GCAGC 3 cut(s) 315, 559, 795
LweI GCATC 5 cut(s) 584, 928, 1234, 1381, 1491
MaeI CTAG 3 cut(s) 1037, 1653, 1660
MaeII ACGT 1 cut(s) 693
MaeIII GTNAC 2 cut(s) 148, 862
MboII GAAGA 8 cut(s) 112, 175, 223, 334, 624, 1178, 1432, 1592
MfeI CAATTG 3 cut(s) 1293, 1356, 1395
MflI RGATCY 1 cut(s) 1282
MhlI GDGCHC 1 cut(s) 1465
Mly113I GGCGCC 2 cut(s) 264, 1181
MlyI GAGTC 1 cut(s) 674
MmeI TCCRAC 5 cut(s) 225, 956, 1213, 1306, 1659
MseI TTAA 3 cut(s) 1085, 1167, 1257
MslI CAYNNNNRTG 1 cut(s) 1507
MspI CCGG 4 cut(s) 270, 287, 1430, 1439
MspR9I CCNGG 3 cut(s) 569, 1430, 1431
MunI CAATTG 3 cut(s) 1293, 1356, 1395
MvaI CCWGG 1 cut(s) 569
MwoI GCNNNNNNNGC 3 cut(s) 560, 569, 1656
NarI GGCGCC 2 cut(s) 264, 1181
NciI CCSGG 2 cut(s) 1430, 1431
NdeI CATATG 1 cut(s) 528
NlaIII CATG 4 cut(s) 39, 406, 962, 979
NlaIV GGNNCC 7 cut(s) 265, 438, 741, 1182, 1219, 1372, 1608
NmeAIII GCCGAG 1 cut(s) 357
NmuCI GTSAC 1 cut(s) 148
PfeI GAWTC 3 cut(s) 1455, 1588, 1622
PkrI GCNGC 6 cut(s) 237, 240, 263, 330, 574, 810
PleI GAGTC 1 cut(s) 673
PluTI GGCGCC 2 cut(s) 267, 1184
PpsI GAGTC 1 cut(s) 673
PpuMI RGGWCCY 1 cut(s) 740
Psp5II RGGWCCY 1 cut(s) 740
Psp6I CCWGG 1 cut(s) 567
PspGI CCWGG 1 cut(s) 567
PspN4I GGNNCC 7 cut(s) 265, 438, 741, 1182, 1219, 1372, 1608
PspPI GGNCC 7 cut(s) 436, 511, 740, 908, 1033, 1160, 1512
PspPPI RGGWCCY 1 cut(s) 740
PsuI RGATCY 1 cut(s) 1282
RsaI GTAC 3 cut(s) 157, 533, 795
RsaNI GTAC 3 cut(s) 156, 532, 794
RseI CAYNNNNRTG 1 cut(s) 1507
SaqAI TTAA 3 cut(s) 1085, 1167, 1257
SatI GCNGC 6 cut(s) 236, 239, 262, 329, 573, 809
Sau96I GGNCC 7 cut(s) 436, 511, 740, 908, 1033, 1160, 1512
SchI GAGTC 1 cut(s) 674
ScrFI CCNGG 3 cut(s) 569, 1430, 1431
SduI GDGCHC 1 cut(s) 1465
SfaNI GCATC 5 cut(s) 584, 928, 1234, 1381, 1491
SfoI GGCGCC 2 cut(s) 265, 1182
SinI GGWCC 2 cut(s) 740, 1033
SmaI CCCGGG 1 cut(s) 1431
SmiMI CAYNNNNRTG 1 cut(s) 1507
SmlI CTYRAG 1 cut(s) 171
SmoI CTYRAG 1 cut(s) 171
SpeI ACTAGT 1 cut(s) 1652
SsiI CCGC 4 cut(s) 236, 239, 261, 1407
SspDI GGCGCC 2 cut(s) 263, 1180
SspMI CTAG 3 cut(s) 1037, 1653, 1660
StyD4I CCNGG 3 cut(s) 567, 1428, 1429
StyI CCWWGG 1 cut(s) 514
TaaI ACNGT 2 cut(s) 868, 992
TaiI ACGT 1 cut(s) 696
TaqI TCGA 4 cut(s) 317, 453, 1333, 1365
TatI WGTACW 2 cut(s) 531, 793
TauI GCSGC 3 cut(s) 238, 241, 264
TfiI GAWTC 3 cut(s) 1455, 1588, 1622
Tru1I TTAA 3 cut(s) 1085, 1167, 1257
Tru9I TTAA 3 cut(s) 1085, 1167, 1257
TscAI CASTG 5 cut(s) 955, 997, 1075, 1140, 1539
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 3 cut(s) 328, 572, 808
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 6 cut(s) 335, 409, 947, 1170, 1601, 1614
TspGWI ACGGA 1 cut(s) 1230
TspMI CCCGGG 1 cut(s) 1429
TspRI CASTG 5 cut(s) 955, 997, 1075, 1140, 1539
VpaK11BI GGWCC 2 cut(s) 740, 1033
XapI RAATTY 4 cut(s) 486, 883, 1319, 1571
XmaI CCCGGG 1 cut(s) 1429
XmiI GTMKAC 2 cut(s) 40, 926
XspI CTAG 3 cut(s) 1037, 1653, 1660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.